BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0155.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777529.1| lipoprotein [Herbaspirillum seropedicae SmR1... 401 e-110 ref|YP_004751224.1| cytochrome oxidase biogenesis protein Sco1/S... 300 9e-80 ref|YP_001354833.1| SenC family protein [Janthinobacterium sp. M... 297 5e-79 ref|YP_001101143.1| SCO1/Sen family protein [Herminiimonas arsen... 295 2e-78 ref|YP_001795690.1| cytochrome C oxidase assembly factor, scoc [... 262 2e-68 ref|YP_004684217.1| protoheme IX farnesyltransferase CtaB [Cupri... 260 9e-68 ref|YP_001156706.1| electron transport protein SCO1/SenC [Polynu... 259 1e-67 ref|YP_294550.1| electron transport protein SCO1/SenC [Ralstonia... 259 1e-67 ref|YP_001798323.1| electron transport protein SCO1/SenC [Polynu... 258 4e-67 ref|YP_724872.1| Sco1/SenC family cytochrome oxidase assembly pr... 258 4e-67 >ref|YP_003777529.1| lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ65621.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/196 (99%), Positives = 195/196 (99%) Query: 1 MKRFFSALLLAGCATLLAACGPSKPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKG 60 MKRF SALLLAGCATLLAACGPSKPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKG Sbjct: 1 MKRFLSALLLAGCATLLAACGPSKPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKG 60 Query: 61 KVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPA 120 KVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPA Sbjct: 61 KVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPA 120 Query: 121 FDKRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKH 180 FDKRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKH Sbjct: 121 FDKRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKH 180 Query: 181 GQGPQTLAHDIKLLLS 196 GQGPQTLAHDIKLLLS Sbjct: 181 GQGPQTLAHDIKLLLS 196 >ref|YP_004751224.1| cytochrome oxidase biogenesis protein Sco1/SenC/PrrC copper metallochaperone [Collimonas fungivorans Ter331] gb|AEK60401.1| Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone [Collimonas fungivorans Ter331] Length = 208 Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 150/207 (72%), Positives = 165/207 (79%), Gaps = 12/207 (5%) Query: 1 MKRFFSALLLAGCATL-LAACGP-----------SKPELKFNNTDVTGLDYAKDFALTDH 48 MKR ++ A L L ACG S F NTDVTGL YA+DFALTDH Sbjct: 1 MKRVIPVVVAGLLAALSLIACGDKPAGGGQEMTLSPANSAFINTDVTGLGYARDFALTDH 60 Query: 49 TGKPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPER 108 TGKPRTLAD+KGK VV+FFGYTQCPDVCPTTMVEM+NVMKELGP A KVQVLFVTVDPER Sbjct: 61 TGKPRTLADYKGKAVVVFFGYTQCPDVCPTTMVEMANVMKELGPQASKVQVLFVTVDPER 120 Query: 109 DTQEVLSQYVPAFDKRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVF 168 DTQE+LS+YVPAFD F+GL GDQ T+KVAKEF+VFYQKVPGK PGSYTMDHTAGSYVF Sbjct: 121 DTQELLSKYVPAFDPSFVGLYGDQAATDKVAKEFRVFYQKVPGKTPGSYTMDHTAGSYVF 180 Query: 169 DPQGRIRLFVKHGQGPQTLAHDIKLLL 195 DP+G IRLFV+HGQGP +AHD+KLLL Sbjct: 181 DPEGHIRLFVRHGQGPDPIAHDLKLLL 207 >ref|YP_001354833.1| SenC family protein [Janthinobacterium sp. Marseille] gb|ABR89946.1| SenC family protein [Janthinobacterium sp. Marseille] Length = 198 Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 141/194 (72%), Positives = 161/194 (82%) Query: 3 RFFSALLLAGCATLLAACGPSKPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKGKV 62 RF S L++ L AC ++ FNNTD+TGL YAK+F+L DH GK RTLADFKGK Sbjct: 2 RFRSLLVICAALFALTACSDKAKQVAFNNTDLTGLGYAKEFSLHDHNGKLRTLADFKGKA 61 Query: 63 VVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFD 122 VV+FFG+TQCPDVCPTTM+EMSNVMK LGPDAD+VQVLFVTVDPERDT +L+QYVPAFD Sbjct: 62 VVVFFGFTQCPDVCPTTMMEMSNVMKALGPDADRVQVLFVTVDPERDTAALLAQYVPAFD 121 Query: 123 KRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQ 182 RFLGLRGD +TEKVAKEFKVFYQKVPGK PGSYT+DHTAGSYVFDPQGRIRLF++HGQ Sbjct: 122 PRFLGLRGDLAETEKVAKEFKVFYQKVPGKTPGSYTVDHTAGSYVFDPQGRIRLFIRHGQ 181 Query: 183 GPQTLAHDIKLLLS 196 G + D+K LL+ Sbjct: 182 GIDPIVQDLKTLLA 195 >ref|YP_001101143.1| SCO1/Sen family protein [Herminiimonas arsenicoxydans] emb|CAL63022.1| putative electron transport protein SCO1/SenC [Herminiimonas arsenicoxydans] Length = 187 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 140/180 (77%), Positives = 156/180 (86%), Gaps = 1/180 (0%) Query: 17 LAACGPSKPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVC 76 L+AC P F NTDVTGL Y KDF+LTDH GKPRTLADFKGK VV+FFG+TQCPDVC Sbjct: 8 LSACSGKAPP-AFTNTDVTGLAYGKDFSLTDHNGKPRTLADFKGKAVVVFFGFTQCPDVC 66 Query: 77 PTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLRGDQQQTE 136 PTTM+EM+NVMK LGPDADKVQVLFVTVDPERDT E+L QYVPAFD RFLGLRGD +TE Sbjct: 67 PTTMLEMANVMKALGPDADKVQVLFVTVDPERDTAELLKQYVPAFDPRFLGLRGDLAETE 126 Query: 137 KVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPQTLAHDIKLLLS 196 K AKEFKVFYQKVPGK PGSYT+DHTAGSYVFD QGRIRLF++HGQG + + HD+K+LL+ Sbjct: 127 KTAKEFKVFYQKVPGKTPGSYTIDHTAGSYVFDTQGRIRLFIRHGQGTEPIVHDLKILLA 186 >ref|YP_001795690.1| cytochrome C oxidase assembly factor, scoc [Cupriavidus taiwanensis LMG 19424] emb|CAP62968.1| putative cytochrome c oxidase assembly factor, scoC [Cupriavidus taiwanensis LMG 19424] Length = 206 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 123/179 (68%), Positives = 148/179 (82%), Gaps = 4/179 (2%) Query: 20 CGPSKPELKFNNTDVTGL-DYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPT 78 CG K F N D+TG D+ KDF+LTDHTGK RTLAD+KGK VVMFFGYT CPDVCPT Sbjct: 30 CGQQKAS--FRNVDITGAADFGKDFSLTDHTGKVRTLADYKGKAVVMFFGYTHCPDVCPT 87 Query: 79 TMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLR-GDQQQTEK 137 TM E+ VM++LGPDAD+VQVLFVTVDPERDTQ +L+QYVPAFD RF+GLR D+ +K Sbjct: 88 TMAELKAVMEKLGPDADRVQVLFVTVDPERDTQALLAQYVPAFDPRFVGLRPADEASLQK 147 Query: 138 VAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPQTLAHDIKLLLS 196 +AK+FKVFY KVPG P +YT+DH+AGSYVFDP G++RLF++HGQGP+ +AHD+K LLS Sbjct: 148 LAKDFKVFYAKVPGSSPNNYTVDHSAGSYVFDPNGKLRLFIRHGQGPEPIAHDLKQLLS 206 >ref|YP_004684217.1| protoheme IX farnesyltransferase CtaB [Cupriavidus necator N-1] gb|AEI75736.1| protoheme IX farnesyltransferase CtaB [Cupriavidus necator N-1] Length = 206 Score = 260 bits (664), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 123/179 (68%), Positives = 146/179 (81%), Gaps = 4/179 (2%) Query: 20 CGPSKPELKFNNTDVTGL-DYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPT 78 CG K F N D+TG D+ KDF+LTDH GK RT+ADFKGK VVMFFGYT CPDVCPT Sbjct: 30 CGQQKAS--FRNVDITGAADFGKDFSLTDHHGKVRTIADFKGKAVVMFFGYTHCPDVCPT 87 Query: 79 TMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLR-GDQQQTEK 137 TM E+ VM++LGPDAD+VQVLFVTVDPERDTQ +L+QYVPAFD RFLGLR D+ +K Sbjct: 88 TMAELKAVMEKLGPDADRVQVLFVTVDPERDTQALLAQYVPAFDARFLGLRPADEAALQK 147 Query: 138 VAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPQTLAHDIKLLLS 196 V K+FKVFY KVPG P +YT+DH+AGSYVFDP+G++RLF++HGQGP +AHD+K LLS Sbjct: 148 VTKDFKVFYAKVPGSSPSNYTVDHSAGSYVFDPEGKLRLFIRHGQGPDPIAHDLKQLLS 206 >ref|YP_001156706.1| electron transport protein SCO1/SenC [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP35142.1| electron transport protein SCO1/SenC [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 196 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 130/195 (66%), Positives = 150/195 (76%), Gaps = 8/195 (4%) Query: 3 RFFSALLLAGCATLLAACGPSKPELKFNNTDVTG-LDYAKDFALTDHTGKPRTLADFKGK 61 RFF ++ +LAAC P KPE F N D+TG + KDF+L D G RTLADFKGK Sbjct: 7 RFFCVAIIC---CVLAACSP-KPE--FKNIDITGSTSFGKDFSLLDPDGNVRTLADFKGK 60 Query: 62 VVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAF 121 VVVMFFGYTQCPDVCPTT+ EM VM LGP +DKVQVLFVTVDPERDT +L QYVP+F Sbjct: 61 VVVMFFGYTQCPDVCPTTLTEMQQVMTLLGPQSDKVQVLFVTVDPERDTAAILKQYVPSF 120 Query: 122 DKRFLGLR-GDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKH 180 D RFLGLR D EKV K+FK++Y+KVPG PGSYTMDHTAGSY FDP+GR+RL++KH Sbjct: 121 DPRFLGLRPADDAALEKVTKDFKIYYKKVPGSTPGSYTMDHTAGSYAFDPEGRLRLYIKH 180 Query: 181 GQGPQTLAHDIKLLL 195 QGP+TLAHD+K LL Sbjct: 181 AQGPETLAHDLKELL 195 >ref|YP_294550.1| electron transport protein SCO1/SenC [Ralstonia eutropha JMP134] gb|AAZ59706.1| Electron transport protein SCO1/SenC [Ralstonia eutropha JMP134] Length = 231 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 123/179 (68%), Positives = 147/179 (82%), Gaps = 4/179 (2%) Query: 20 CGPSKPELKFNNTDVTG-LDYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPT 78 CG K F N D++G D+ KDF+L DH GK RT++DFKGKVVVMFFGYT CPDVCPT Sbjct: 55 CGQQK--ASFRNVDISGGADFGKDFSLIDHNGKVRTISDFKGKVVVMFFGYTHCPDVCPT 112 Query: 79 TMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLR-GDQQQTEK 137 TM E+ VM++LGPDADKVQVLFVTVDPERDTQ +L+QYVPAFD RFLG+R D+ +K Sbjct: 113 TMAELKAVMEQLGPDADKVQVLFVTVDPERDTQALLAQYVPAFDPRFLGMRPADEAALQK 172 Query: 138 VAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPQTLAHDIKLLLS 196 VAK+FKV+Y KVPG P +YTMDH+AGSYVFDP+G +RLF++HGQGP+ +AHDIK LLS Sbjct: 173 VAKDFKVYYAKVPGTSPNNYTMDHSAGSYVFDPEGHLRLFIRHGQGPEPIAHDIKQLLS 231 >ref|YP_001798323.1| electron transport protein SCO1/SenC [Polynucleobacter necessarius subsp. necessarius STIR1] gb|ACB44709.1| electron transport protein SCO1/SenC [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 194 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 129/189 (68%), Positives = 148/189 (78%), Gaps = 5/189 (2%) Query: 9 LLAGCATLLAACGPSKPELKFNNTDVTG-LDYAKDFALTDHTGKPRTLADFKGKVVVMFF 67 LA +L AC P KP KF N D+TG + KDF+L D K RTL DFKGKVVVMFF Sbjct: 8 FLAILCFVLTACSP-KP--KFKNIDITGSTAFGKDFSLLDSDDKVRTLTDFKGKVVVMFF 64 Query: 68 GYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLG 127 GYTQCPD+CPTT+ EM VM LGP +DKVQVLFVTVDPERDT E+L QYVPAFD RFLG Sbjct: 65 GYTQCPDICPTTLTEMQQVMALLGPQSDKVQVLFVTVDPERDTAEILKQYVPAFDPRFLG 124 Query: 128 LR-GDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPQT 186 LR D+ EKV K+FK++Y+KVPG +PGSYTMDHTAGSY FDP+GR+RL+VKH QGP+T Sbjct: 125 LRPADEAGLEKVTKDFKIYYKKVPGTKPGSYTMDHTAGSYAFDPEGRLRLYVKHAQGPET 184 Query: 187 LAHDIKLLL 195 LAHD+K LL Sbjct: 185 LAHDLKELL 193 >ref|YP_724872.1| Sco1/SenC family cytochrome oxidase assembly protein [Ralstonia eutropha H16] emb|CAJ91504.1| cytochrome oxidase assembly protein, Sco1/SenC family [Ralstonia eutropha H16] Length = 206 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 122/179 (68%), Positives = 145/179 (81%), Gaps = 4/179 (2%) Query: 20 CGPSKPELKFNNTDVTGL-DYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPT 78 CG K F N D+TG D+ KDF+LTDH GK RT+ADFKGK VVMFFGYT CPDVCPT Sbjct: 30 CGQQKAS--FRNVDITGAADFGKDFSLTDHHGKVRTIADFKGKAVVMFFGYTHCPDVCPT 87 Query: 79 TMVEMSNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLR-GDQQQTEK 137 TM E+ VM++LGPDAD+VQVLFVTVDPERDTQ +L+QYVPAFD RFLGLR D+ +K Sbjct: 88 TMAELKAVMEKLGPDADRVQVLFVTVDPERDTQALLAQYVPAFDARFLGLRPADEAALQK 147 Query: 138 VAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPQTLAHDIKLLLS 196 + K+FKVFY KVPG P +YT+DH+AGSYVFDP G++RLF++HGQGP +AHD+K LLS Sbjct: 148 LTKDFKVFYAKVPGSSPNNYTVDHSAGSYVFDPDGKLRLFIRHGQGPDPIAHDLKQLLS 206