BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0154.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777528.1| RNA polymerase sigma-32 factor protein [Herb... 607 e-172 ref|YP_004751227.1| RNA polymerase sigma factor [Collimonas fung... 543 e-152 ref|YP_001354832.1| RNA polymerase sigma-32 factor [Janthinobact... 529 e-148 ref|ZP_08275256.1| RNA polymerase sigma factor RpoH [Oxalobacter... 528 e-148 ref|YP_001101142.1| sigma H factor [Herminiimonas arsenicoxydans... 526 e-147 ref|ZP_04577908.1| RNA polymerase sigma-32 factor [Oxalobacter f... 461 e-128 ref|ZP_04580056.1| RNA polymerase sigma-32 factor [Oxalobacter f... 459 e-127 ref|YP_582427.1| RNA polymerase factor sigma-32 [Cupriavidus met... 440 e-121 ref|YP_004684218.1| DNA-directed RNA polymerase sigma subunit Rp... 436 e-120 ref|YP_724873.1| RNA polymerase factor sigma-32 [Ralstonia eutro... 434 e-120 >ref|YP_003777528.1| RNA polymerase sigma-32 factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65620.1| RNA polymerase sigma-32 factor protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 298/299 (99%), Positives = 299/299 (100%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL Sbjct: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH Sbjct: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE Sbjct: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEP+RVIEAKQYDRLQSEGLEAAL Sbjct: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS Sbjct: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 >ref|YP_004751227.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK60404.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 299 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 259/299 (86%), Positives = 286/299 (95%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 MK S TALMP +++ALALGFSG+LGNIDAYISAVNRLPMLTH+EE+ LA+ LR+KNDL Sbjct: 1 MKNPSVNTALMPTDTSALALGFSGTLGNIDAYISAVNRLPMLTHDEEITLAQQLRDKNDL 60 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMH Sbjct: 61 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMH 120 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQV+ALAKTL+VKREE Sbjct: 121 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVDALAKTLNVKREE 180 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 VIEMETRL+GRDIALE+PTDD+DDKFAPIAYLS++ EPS+V+EA++YDR+QSEGLE+AL Sbjct: 181 VIEMETRLTGRDIALEAPTDDDDDKFAPIAYLSTEAQEPSKVLEAQRYDRMQSEGLESAL 240 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 SKLD+RSRRIVEARWLANDDGSG+TLHELADEFGVSAERIRQIEAVALKKMK SL A++ Sbjct: 241 SKLDDRSRRIVEARWLANDDGSGSTLHELADEFGVSAERIRQIEAVALKKMKGSLAAFA 299 >ref|YP_001354832.1| RNA polymerase sigma-32 factor [Janthinobacterium sp. Marseille] gb|ABR89246.1| RNA polymerase sigma-32 factor [Janthinobacterium sp. Marseille] Length = 298 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 258/299 (86%), Positives = 278/299 (92%), Gaps = 1/299 (0%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 MK SA TAL+P SN LALGFSG+LGNIDAYISAVNRLPMLTHEEE+ LAR LR++NDL Sbjct: 1 MKAVSASTALVP-NSNMLALGFSGALGNIDAYISAVNRLPMLTHEEEMSLARRLRDENDL 59 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSY+MH Sbjct: 60 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMH 119 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLD+MTP QV+ LAKTL+VKREE Sbjct: 120 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDSMTPDQVDELAKTLNVKREE 179 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALE+PTDDEDDKFAPIAYLSSD EP++V+E++Q+DRLQ+EGL AL Sbjct: 180 VIEMETRLSGRDIALEAPTDDEDDKFAPIAYLSSDMQEPTKVLESQQFDRLQTEGLSNAL 239 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 KLD RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMK SL AY+ Sbjct: 240 GKLDARSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLAAYA 298 >ref|ZP_08275256.1| RNA polymerase sigma factor RpoH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31276.1| RNA polymerase sigma factor RpoH [Oxalobacteraceae bacterium IMCC9480] Length = 298 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 258/299 (86%), Positives = 279/299 (93%), Gaps = 1/299 (0%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 MKT +TA + A NALALGF+G+LGNID+YISAVNRLPMLTHEEE+ LAR LR++NDL Sbjct: 1 MKTTVPETASV-APGNALALGFTGTLGNIDSYISAVNRLPMLTHEEEMSLARRLRDQNDL 59 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQ MVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMH Sbjct: 60 GAAQGMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMH 119 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLD+MTPAQVEALA+TL+VKREE Sbjct: 120 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDSMTPAQVEALAQTLNVKREE 179 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALE+PTDDEDDKFAPIAYLSSD +EP+ V+EA+QYDRLQS+GL AL Sbjct: 180 VIEMETRLSGRDIALEAPTDDEDDKFAPIAYLSSDRNEPTNVLEAQQYDRLQSDGLSQAL 239 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 +KLDERSRRIVEARWLANDDGSGATLHELA EFGVSAERIRQIEAVALKKMK SL A++ Sbjct: 240 NKLDERSRRIVEARWLANDDGSGATLHELAKEFGVSAERIRQIEAVALKKMKGSLAAFA 298 >ref|YP_001101142.1| sigma H factor [Herminiimonas arsenicoxydans] emb|CAL63021.1| RNA polymerase sigma-32 factor [Herminiimonas arsenicoxydans] Length = 298 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/299 (84%), Positives = 279/299 (93%), Gaps = 1/299 (0%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 MK SA TA++ + SN ++LGFSG+LGNIDAYISAVNRLPMLTHEEE+ LA+ LR+ NDL Sbjct: 1 MKATSASTAMI-SPSNMMSLGFSGALGNIDAYISAVNRLPMLTHEEEISLAKRLRDDNDL 59 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSY+MH Sbjct: 60 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMH 119 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLDAMTP QVEALAKTL+VKREE Sbjct: 120 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPDQVEALAKTLNVKREE 179 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALE+PTDDEDDKFAPIAYLSSD+ EP+RV+E+++YDRLQ+EGL +AL Sbjct: 180 VIEMETRLSGRDIALEAPTDDEDDKFAPIAYLSSDSQEPTRVLESQRYDRLQTEGLSSAL 239 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 KLD RSRRIVEARWLANDDGSGATLHELA+EFGVSAERIRQIE VALKKMK SL A++ Sbjct: 240 GKLDPRSRRIVEARWLANDDGSGATLHELANEFGVSAERIRQIETVALKKMKGSLAAFA 298 >ref|ZP_04577908.1| RNA polymerase sigma-32 factor [Oxalobacter formigenes HOxBLS] gb|EEO28870.1| RNA polymerase sigma-32 factor [Oxalobacter formigenes HOxBLS] Length = 299 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/299 (74%), Positives = 256/299 (85%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 M SAQT+ MP S+ALA F+GSLGNI+AYI+ VNRLP+LT E+E LA RE+NDL Sbjct: 1 MNAKSAQTSFMPVSSHALAPAFTGSLGNIEAYIAEVNRLPILTLEQETDLALRYRERNDL 60 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 AAQ++VLSHLRLVVSIAR YLGYGLPHADLIQEGNIGLMKAVKRFDP VRLVSYA+H Sbjct: 61 SAAQELVLSHLRLVVSIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPGMGVRLVSYAIH 120 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAEIHEYIL+NWR+VK+ATTKAQRKLFFNLRSHK GLD+MT AQ+ +LA+ L+VK EE Sbjct: 121 WIKAEIHEYILRNWRMVKIATTKAQRKLFFNLRSHKNGLDSMTRAQIRSLAEKLNVKDEE 180 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 V EMETRL+G DIALE+ DD+DD FAPIAYLSS+ +EP+ ++EA+Q DR+QSEGL AL Sbjct: 181 VAEMETRLNGHDIALETQHDDDDDNFAPIAYLSSEQTEPASILEARQNDRMQSEGLAEAL 240 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 +KLD RSRRIVEARWL +DDG+ ATLH LA EFGVSAERIRQIEA ALKKMK +L AYS Sbjct: 241 AKLDPRSRRIVEARWLNSDDGNSATLHALAAEFGVSAERIRQIEAAALKKMKNTLTAYS 299 >ref|ZP_04580056.1| RNA polymerase sigma-32 factor [Oxalobacter formigenes OXCC13] gb|EEO31029.1| RNA polymerase sigma-32 factor [Oxalobacter formigenes OXCC13] Length = 299 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/299 (74%), Positives = 255/299 (85%) Query: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 M SAQ +L+P +ALA +GSLGNI+AYI+ +NRLPMLT E E +LA+ E NDL Sbjct: 1 MSAKSAQASLLPVSRHALAPVLTGSLGNIEAYIAEINRLPMLTQERETELAQRYHENNDL 60 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 AAQ++VLSHLRLV SIAR YLGYGLPHADLIQEGNIGLMKAVKRFDP VRLVSYA+H Sbjct: 61 AAAQELVLSHLRLVASIARNYLGYGLPHADLIQEGNIGLMKAVKRFDPKMGVRLVSYAIH 120 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAEIHEYIL+NWR+VKVATTKAQRKLFFNLRSHK G +AMT Q+ +LA+ L+VK EE Sbjct: 121 WIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKSGNEAMTREQIRSLAEKLNVKDEE 180 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAAL 240 V EMETRLSG DIALE+ DD+DD FAPIAYLSS+ +EP+RV+EAKQ+DRLQSEGL AL Sbjct: 181 VSEMETRLSGHDIALETQHDDDDDNFAPIAYLSSEQTEPTRVLEAKQHDRLQSEGLAEAL 240 Query: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 KLD+RS+RI+EARWL NDDGSGATLH+LA+EFGVSAERIRQIEA ALKKMK +L A+S Sbjct: 241 DKLDDRSKRIIEARWLKNDDGSGATLHDLAEEFGVSAERIRQIEAAALKKMKNTLAAFS 299 >ref|YP_582427.1| RNA polymerase factor sigma-32 [Cupriavidus metallidurans CH34] gb|ABF07158.1| RNA polymerase sigma 32 (sigma H) factor [Cupriavidus metallidurans CH34] Length = 311 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/294 (72%), Positives = 256/294 (87%), Gaps = 2/294 (0%) Query: 8 TALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDLGAAQKMV 67 TA A +NA AL F G+LGN+D+YI AV+R+PMLT EEE+ LARDLR+ + + AA++MV Sbjct: 18 TAPQNAAANAFALTFPGTLGNLDSYIQAVHRIPMLTPEEELSLARDLRDNDSVDAARRMV 77 Query: 68 LSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMHWIKAEIH 127 +SHLRLVVSIAR YLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMHWIKAEIH Sbjct: 78 MSHLRLVVSIARQYLGYGLPHADLIQEGNIGLMKAVKRFDPEQGVRLVSYAMHWIKAEIH 137 Query: 128 EYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREEVIEMETR 187 EY+LKNWR+VKVATTKAQRKLFFNLRSHK+G TP Q+EA+A+ L+VK EEV+EMETR Sbjct: 138 EYVLKNWRMVKVATTKAQRKLFFNLRSHKQGSHTFTPEQIEAVARELNVKPEEVMEMETR 197 Query: 188 LSGRDIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAALSKLDERS 247 +SG D+ALE +D +++FAPIAYL+ +++EP++V+EAK++DRLQ EGLE AL+KLD RS Sbjct: 198 MSGGDMALEGQIEDGEEEFAPIAYLADNHNEPTQVLEAKRHDRLQVEGLEEALTKLDPRS 257 Query: 248 RRIVEARWL-ANDDGS-GATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 RRI+EARWL NDDGS GATLHELADEFGVSAERIRQIE+ A+KKMK +L A++ Sbjct: 258 RRIIEARWLDVNDDGSGGATLHELADEFGVSAERIRQIESAAMKKMKGALAAFA 311 >ref|YP_004684218.1| DNA-directed RNA polymerase sigma subunit RpoH [Cupriavidus necator N-1] gb|AEI75737.1| DNA-directed RNA polymerase sigma subunit RpoH [Cupriavidus necator N-1] Length = 308 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/290 (72%), Positives = 253/290 (87%), Gaps = 2/290 (0%) Query: 12 PAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDLGAAQKMVLSHL 71 P + + AL F ++GN+D+YI AV+R+P+LT EEE +LAR+LR+ + + AA++MV+SHL Sbjct: 19 PRSTGSFALAFPATVGNLDSYIQAVHRIPLLTAEEEQRLARELRDHDSVDAARQMVMSHL 78 Query: 72 RLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMHWIKAEIHEYIL 131 RLVVSIAR YLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMHWIKAEIHEY+L Sbjct: 79 RLVVSIARQYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYVL 138 Query: 132 KNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREEVIEMETRLSGR 191 KNWR+VKVATTKAQRKLFFNLRSHK+G TP QVEA+A+ L+VK EEV+EMETRLSG Sbjct: 139 KNWRMVKVATTKAQRKLFFNLRSHKQGAHTFTPEQVEAVARELNVKPEEVMEMETRLSGG 198 Query: 192 DIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAALSKLDERSRRIV 251 D+ALE DD +++FAPIAYL+ +++EP+RV+EAK++DR+Q EGLE AL+KLDERSRRI+ Sbjct: 199 DLALEGQIDDGEEEFAPIAYLADNHNEPTRVLEAKRHDRMQVEGLEEALAKLDERSRRII 258 Query: 252 EARWL-ANDDGS-GATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 EARWL DDGS G+TLHELADEFGVSAERIRQIEA A+KKMK +LQA++ Sbjct: 259 EARWLHVEDDGSGGSTLHELADEFGVSAERIRQIEAAAMKKMKGALQAFA 308 >ref|YP_724873.1| RNA polymerase factor sigma-32 [Ralstonia eutropha H16] emb|CAJ91505.1| DNA-directed RNA polymerase sigma subunit (RpoH) [Ralstonia eutropha H16] Length = 308 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/290 (72%), Positives = 252/290 (86%), Gaps = 2/290 (0%) Query: 12 PAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDLGAAQKMVLSHL 71 P + + AL F ++GN+D+YI AV+R+P+LT EEE +LAR+LR+ + + AA++MV+SHL Sbjct: 19 PRSTGSFALTFPATVGNLDSYIQAVHRIPLLTAEEEQRLARELRDHDSVDAARQMVMSHL 78 Query: 72 RLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMHWIKAEIHEYIL 131 RLVVSIAR YLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMHWIKAEIHEY+L Sbjct: 79 RLVVSIARQYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYVL 138 Query: 132 KNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREEVIEMETRLSGR 191 KNWR+VKVATTKAQRKLFFNLRSHK+G TP QVEA+A+ L+VK EEV+EMETRLSG Sbjct: 139 KNWRMVKVATTKAQRKLFFNLRSHKQGAHTFTPEQVEAVARELNVKPEEVMEMETRLSGG 198 Query: 192 DIALESPTDDEDDKFAPIAYLSSDNSEPSRVIEAKQYDRLQSEGLEAALSKLDERSRRIV 251 D+ALE DD +++FAPIAYL+ +++EP+RV+EAK++DR+Q EGLE AL KLDERSRRI+ Sbjct: 199 DLALEGQIDDGEEEFAPIAYLADNHNEPTRVLEAKRHDRMQVEGLEEALGKLDERSRRII 258 Query: 252 EARWL-ANDDGS-GATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 EARWL DDGS G+TLHELADEFGVSAERIRQIEA A+KKMK +LQA++ Sbjct: 259 EARWLHVEDDGSGGSTLHELADEFGVSAERIRQIEAAAMKKMKGALQAFA 308