BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0132.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777506.1| phenylacetic acid degradation protein [Herba... 368 e-100 ref|YP_297940.1| phenylacetate-CoA oxygenase subunit PaaJ [Ralst... 221 3e-56 ref|YP_840879.1| phenylacetic acid degradation protein D [Ralsto... 219 1e-55 ref|YP_004681514.1| phenylacetic acid degradation protein PaaD [... 218 3e-55 ref|YP_002008255.1| subunit of multicomponent oxygenase, phenyla... 213 8e-54 ref|YP_785905.1| phenylacetic acid degradation protein [Bordetel... 205 3e-51 gb|EGP44974.1| phenylacetate-CoA oxygenase, PaaJ subunit [Achrom... 203 7e-51 gb|EFV83485.1| phenylacetic acid degradation protein [Achromobac... 202 1e-50 ref|YP_001630535.1| phenylacetic acid degradation protein [Borde... 202 2e-50 ref|NP_881293.1| phenylacetic acid degradation protein [Bordetel... 201 3e-50 >ref|YP_003777506.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65598.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 181 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/181 (98%), Positives = 181/181 (100%) Query: 1 VSEAQLALQAGPEALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVV 60 +SEAQLALQAGP+ALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVV Sbjct: 1 MSEAQLALQAGPDALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVV 60 Query: 61 ITPTYSGCPAMGVIAEDITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAP 120 ITPTYSGCPAMGVIAEDITTVLQEKGLAQVAIRIQLAPAW+TDWMSEKGRHNLRQYGIAP Sbjct: 61 ITPTYSGCPAMGVIAEDITTVLQEKGLAQVAIRIQLAPAWSTDWMSEKGRHNLRQYGIAP 120 Query: 121 PAQQVIDIRGIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKA 180 PAQQVIDIRGIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKA Sbjct: 121 PAQQVIDIRGIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKA 180 Query: 181 H 181 H Sbjct: 181 H 181 >ref|YP_297940.1| phenylacetate-CoA oxygenase subunit PaaJ [Ralstonia eutropha JMP134] gb|AAZ63096.1| Phenylacetate-CoA oxygenase, PaaJ subunit [Ralstonia eutropha JMP134] Length = 171 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 107/176 (60%), Positives = 130/176 (73%), Gaps = 5/176 (2%) Query: 6 LALQAGPEALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTY 65 ++ Q A A++WDWLE VPDPEIPV+SVVDLGIVR+V +D C + ITPTY Sbjct: 1 MSAQVLERASVAQLWDWLEQVPDPEIPVISVVDLGIVRDV-----AWIDDACVITITPTY 55 Query: 66 SGCPAMGVIAEDITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQV 125 SGCPAM VI +DI VL +G+ +++++ +LAPAW TDWMS +G+ +L YGIAPPAQQV Sbjct: 56 SGCPAMTVIRDDIERVLGAQGIDRISVQTRLAPAWTTDWMSPRGKASLSGYGIAPPAQQV 115 Query: 126 IDIRGIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 IDI GI K A V CPHCGS T VSQFGST+CKALY+C DC+EPFDYFKAH Sbjct: 116 IDISGISRKASPALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 171 >ref|YP_840879.1| phenylacetic acid degradation protein D [Ralstonia eutropha H16] emb|CAJ96149.1| phenylacetic acid degradation protein D [Ralstonia eutropha H16] Length = 171 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/165 (64%), Positives = 122/165 (73%), Gaps = 5/165 (3%) Query: 17 ARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGVIAE 76 ++W WL+ VPDPEIPV+SVVDLGIVR+V E D C V ITPTYSGCPAM VI E Sbjct: 12 GQVWTWLDTVPDPEIPVISVVDLGIVRDVAWE-----DDACVVTITPTYSGCPAMTVIRE 66 Query: 77 DITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQLKHH 136 +I L +G+A V +R QLAPAW TDWM+ +G+ +L YGIAPPAQQVIDI GI K Sbjct: 67 EIERTLAAQGIASVRVRTQLAPAWTTDWMTPRGKASLGGYGIAPPAQQVIDISGISRKAA 126 Query: 137 AAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 A V CPHCGS T VSQFGST+CKALY+C DC+EPFDYFKAH Sbjct: 127 PALVVACPHCGSRHTRLVSQFGSTACKALYRCSDCKEPFDYFKAH 171 >ref|YP_004681514.1| phenylacetic acid degradation protein PaaD [Cupriavidus necator N-1] gb|AEI80282.1| phenylacetic acid degradation protein PaaD [Cupriavidus necator N-1] Length = 171 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 106/165 (64%), Positives = 122/165 (73%), Gaps = 5/165 (3%) Query: 17 ARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGVIAE 76 ++W WL+ VPDPEIPV+SVVDLGIVR+V E D C V ITPTYSGCPAM VI E Sbjct: 12 GQVWTWLDTVPDPEIPVISVVDLGIVRDVAWE-----DDACIVTITPTYSGCPAMTVIRE 66 Query: 77 DITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQLKHH 136 +I L +G+A V +R QLAPAW TDWM+ +G+ +L YGIAPPAQQVIDI GI K Sbjct: 67 EIERTLAAQGIASVRVRTQLAPAWTTDWMTPRGKASLGGYGIAPPAQQVIDISGISRKVA 126 Query: 137 AAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 A V CPHCGS T VSQFGST+CKALY+C DC+EPFDYFKAH Sbjct: 127 PALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 171 >ref|YP_002008255.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 4 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72201.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 4 [Cupriavidus taiwanensis LMG 19424] Length = 174 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 105/164 (64%), Positives = 122/164 (74%), Gaps = 5/164 (3%) Query: 18 RIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGVIAED 77 ++W WL+ V DPEIPV+SVVDLGIVR+V E DA C V ITPTYSGCPAM VI E Sbjct: 16 QVWTWLDTVADPEIPVISVVDLGIVRDVAWEG----DA-CVVTITPTYSGCPAMTVIREG 70 Query: 78 ITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQLKHHA 137 I + L +G+ QV ++ QLAPAW TDWM+ +G+ +L YGIAPPAQQVIDI GI K Sbjct: 71 IESALAAQGVDQVRVQTQLAPAWTTDWMTPRGKASLTGYGIAPPAQQVIDISGISRKTSP 130 Query: 138 AAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 A V CPHCGS T VSQFGST+CKALY+C DC+EPFDYFKAH Sbjct: 131 ALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 174 >ref|YP_785905.1| phenylacetic acid degradation protein [Bordetella avium 197N] emb|CAJ48992.1| phenylacetic acid degradation protein [Bordetella avium 197N] Length = 166 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/168 (60%), Positives = 119/168 (70%), Gaps = 6/168 (3%) Query: 14 ALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGV 73 A +++ WLE+VPDPEIPVLSVVDLGIVREV G + C V ITPTYSGCPAM Sbjct: 5 ADSSQVMRWLESVPDPEIPVLSVVDLGIVREV-----GWEEGTCVVTITPTYSGCPAMRE 59 Query: 74 IAEDITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQL 133 I EDI VL GL QV ++ +L+PAW TDWM+E+GR L+ YGIA PA++ +DI GI Sbjct: 60 ITEDIVQVLAGHGLEQVRVQTRLSPAWTTDWMTERGRAALKGYGIAAPAERAVDISGISR 119 Query: 134 KHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 K A + CP C SS T +S FGSTSCKALY+C DCREPFDYFK H Sbjct: 120 K-QAMPAIPCPRCASSNTRLISNFGSTSCKALYRCADCREPFDYFKTH 166 >gb|EGP44974.1| phenylacetate-CoA oxygenase, PaaJ subunit [Achromobacter xylosoxidans AXX-A] Length = 168 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 101/164 (61%), Positives = 119/164 (72%), Gaps = 6/164 (3%) Query: 18 RIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGVIAED 77 +++ WL+ VPDPEIPVLSVVDLG+VR+V + DA C VVITPTYSGCPAM I ED Sbjct: 11 QVYAWLQEVPDPEIPVLSVVDLGVVRDVAWDG----DA-CVVVITPTYSGCPAMREITED 65 Query: 78 ITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQLKHHA 137 I VL G+ +V + +L+PAW TDWMSEKGR L+ YGIA PAQQ IDI GI + +A Sbjct: 66 IRQVLARHGVGEVRVETRLSPAWTTDWMSEKGRAALKDYGIAAPAQQAIDISGIS-RRNA 124 Query: 138 AAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 ++CP CGS T VS FGSTSCKALY+C CREPFDYFK H Sbjct: 125 GPPIECPRCGSRDTRLVSNFGSTSCKALYRCVSCREPFDYFKTH 168 >gb|EFV83485.1| phenylacetic acid degradation protein [Achromobacter xylosoxidans C54] Length = 169 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/164 (61%), Positives = 118/164 (71%), Gaps = 6/164 (3%) Query: 18 RIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGVIAED 77 +++ WL+ VPDPEIPVLSVVDLG+VR+V + DA C VVITPTYSGCPAM I ED Sbjct: 12 QVYAWLQEVPDPEIPVLSVVDLGVVRDVSWDG----DA-CVVVITPTYSGCPAMREITED 66 Query: 78 ITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQLKHHA 137 I VL G+ +V + +L+PAW TDWMSEKGR L+ YGIA PAQQ IDI GI + A Sbjct: 67 IRQVLARHGIGEVRVETRLSPAWTTDWMSEKGRAALKDYGIAAPAQQAIDISGISWR-SA 125 Query: 138 AAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 ++CP CGS T VS FGSTSCKALY+C CREPFDYFK H Sbjct: 126 GPAIECPRCGSRDTRLVSNFGSTSCKALYRCVSCREPFDYFKTH 169 >ref|YP_001630535.1| phenylacetic acid degradation protein [Bordetella petrii DSM 12804] emb|CAP42266.1| phenylacetic acid degradation protein [Bordetella petrii] Length = 170 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/160 (63%), Positives = 114/160 (71%), Gaps = 6/160 (3%) Query: 22 WLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMGVIAEDITTV 81 WLE+VPDPEIPVLSVVDLG+VREV + A C V ITPTYSGCPAM I DI Sbjct: 17 WLESVPDPEIPVLSVVDLGVVREVAWDGA-----TCVVTITPTYSGCPAMREITHDIERT 71 Query: 82 LQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQLKHHAAAQV 141 L G+A V + +LAPAW TDWMSE+GR L+ YGIA PA++ IDI GI + A V Sbjct: 72 LAGHGVAAVRVETRLAPAWTTDWMSERGRAALKGYGIAAPAERAIDISGIS-RRVAEPVV 130 Query: 142 DCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 CPHCGS+RT VS FGSTSCKALY+C CREPFDYFK H Sbjct: 131 ACPHCGSTRTRLVSHFGSTSCKALYRCGACREPFDYFKTH 170 >ref|NP_881293.1| phenylacetic acid degradation protein [Bordetella pertussis Tohama I] emb|CAE42957.1| phenylacetic acid degradation protein [Bordetella pertussis Tohama I] gb|AEE67900.1| phenylacetic acid degradation protein [Bordetella pertussis CS] Length = 168 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 100/174 (57%), Positives = 118/174 (67%), Gaps = 6/174 (3%) Query: 8 LQAGPEALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSG 67 + A P ++ WLE+VPDPEIPVLSVVDLG+VR++ G C V ITPTYSG Sbjct: 1 MNALPRVPAGQVLAWLESVPDPEIPVLSVVDLGVVRDI-----GWDGDTCVVTITPTYSG 55 Query: 68 CPAMGVIAEDITTVLQEKGLAQVAIRIQLAPAWNTDWMSEKGRHNLRQYGIAPPAQQVID 127 CPAM I DI T L GLA V I +LAPAW TDWM+ +GR LRQYGIA P ++ +D Sbjct: 56 CPAMREITHDIETTLAGHGLASVRIETRLAPAWTTDWMTARGRAALRQYGIAAPVERAVD 115 Query: 128 IRGIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 I GI + AA ++CPHCGS T +S FGSTSCKALY+C CREPFDYFK H Sbjct: 116 ISGIS-RRRAAPAIECPHCGSLDTRLISHFGSTSCKALYRCVACREPFDYFKPH 168