BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0131.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777505.1| phenylacetic acid degradation protein [Herba... 513 e-144 ref|YP_002008256.1| subunit of multicomponent oxygenase, phenyla... 372 e-101 ref|YP_297939.1| phenylacetate-CoA oxygenase subunit PaaI [Ralst... 370 e-100 ref|YP_004681515.1| phenylacetic acid degradation protein PaaC [... 364 7e-99 ref|YP_840880.1| phenylacetic acid degradation protein C [Ralsto... 358 4e-97 ref|YP_160275.1| hypothetical protein ebA5722 [Aromatoleum aroma... 335 3e-90 gb|EGP44973.1| phenylacetic acid degradation protein [Achromobac... 334 6e-90 gb|EFV83484.1| phenylacetic acid degradation protein [Achromobac... 332 4e-89 ref|YP_785904.1| phenylacetic acid degradation protein [Bordetel... 323 2e-86 ref|YP_001630534.1| phenylacetic acid degradation protein [Borde... 320 1e-85 >ref|YP_003777505.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65597.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/250 (100%), Positives = 250/250 (100%) Query: 1 MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE 60 MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE Sbjct: 1 MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE 60 Query: 61 GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI 120 GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI Sbjct: 61 GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI 120 Query: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM 180 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM Sbjct: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM 180 Query: 181 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF 240 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF Sbjct: 181 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF 240 Query: 241 LQRAYPGAQW 250 LQRAYPGAQW Sbjct: 241 LQRAYPGAQW 250 >ref|YP_002008256.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72202.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 [Cupriavidus taiwanensis LMG 19424] Length = 250 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/249 (72%), Positives = 205/249 (82%), Gaps = 1/249 (0%) Query: 2 TQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEG 61 K +Y+ RLGD+ LVL QRL+EWCG+GPALEED+AL NV+LDLIGQ RLWL YAAE+EG Sbjct: 3 NHKLEYLLRLGDSTLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEG 62 Query: 62 QGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIA 121 GR D LAFLRDAHQF NLLLVE PNGSYADTLARQFLFD WHYF LE L +S+DARIA Sbjct: 63 AGRTADHLAFLRDAHQFRNLLLVEQPNGSYADTLARQFLFDTWHYFQLEALQRSTDARIA 122 Query: 122 EIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQ 181 EIA K KEVTYHVRRS DL++RLGDG+E+SHRRMQ A D LWM+TGELF ADA + A+ Sbjct: 123 EIAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFDDLWMFTGELFEADAAETALA 182 Query: 182 EQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQFL 241 +GV A G + + W +HV +VL EATL+V PAG W QSGG+ GRHTEHLGYLLAEMQFL Sbjct: 183 NEGVIPAPGTLAEPWQRHVGEVLEEATLRV-PAGQWAQSGGRHGRHTEHLGYLLAEMQFL 241 Query: 242 QRAYPGAQW 250 QRAYPGAQW Sbjct: 242 QRAYPGAQW 250 >ref|YP_297939.1| phenylacetate-CoA oxygenase subunit PaaI [Ralstonia eutropha JMP134] gb|AAZ63095.1| Phenylacetate-CoA oxygenase, PaaI subunit [Ralstonia eutropha JMP134] Length = 250 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/248 (72%), Positives = 206/248 (83%), Gaps = 1/248 (0%) Query: 3 QKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEGQ 62 K +Y++RLGD LVL QRL+EWCG+GPALEED+AL NV+LDL+GQ RLWL YAAE+EG Sbjct: 4 HKFEYLQRLGDTTLVLGQRLSEWCGRGPALEEDIALTNVALDLVGQTRLWLGYAAEVEGV 63 Query: 63 GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIAE 122 GRN DQLA+LRDAHQF NLLLVE PNGSYADTLARQFLFD WHYFLLE L S+DARIAE Sbjct: 64 GRNADQLAYLRDAHQFRNLLLVEQPNGSYADTLARQFLFDTWHYFLLERLQHSTDARIAE 123 Query: 123 IAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQE 182 IA K KEVTYHVRRS DL++RLGDGTE+SHRRMQ A D LWM+TGELF +DA + A+ Sbjct: 124 IAAKSLKEVTYHVRRSGDLVVRLGDGTEESHRRMQDAFDDLWMFTGELFESDAAEVALVA 183 Query: 183 QGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQFLQ 242 QGVA + + W +HV +VL EATL++ PAG W Q+GG+ GRHTEHLGYLLAEMQFLQ Sbjct: 184 QGVAVDPASLAESWQRHVGEVLEEATLRI-PAGNWSQTGGRQGRHTEHLGYLLAEMQFLQ 242 Query: 243 RAYPGAQW 250 RAYPGA+W Sbjct: 243 RAYPGARW 250 >ref|YP_004681515.1| phenylacetic acid degradation protein PaaC [Cupriavidus necator N-1] gb|AEI80283.1| phenylacetic acid degradation protein PaaC [Cupriavidus necator N-1] Length = 251 Score = 364 bits (934), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 176/249 (70%), Positives = 203/249 (81%), Gaps = 1/249 (0%) Query: 2 TQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEG 61 K +Y+ RLGD+ LVL QRL+EWCG+GPALEED+AL NV+LDLIGQ RLWL YAAE+EG Sbjct: 4 NHKLEYLLRLGDSTLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEG 63 Query: 62 QGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIA 121 GR DQLA+LRDAHQF NLLL E PNGSYADTLARQFLFD WHYFLL+GL +S+DARIA Sbjct: 64 AGRTADQLAYLRDAHQFRNLLLAEQPNGSYADTLARQFLFDTWHYFLLDGLQRSTDARIA 123 Query: 122 EIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQ 181 EIA K KEVTYHVRRS DL++RLGDG+E+SHRRMQ A D LWM++GELF +DA D A+ Sbjct: 124 EIAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFDDLWMFSGELFESDAGDAALV 183 Query: 182 EQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQFL 241 + GV + + W +HV VL EATL++ PAG W QSGG+ GRHTEHLGYLLAEMQFL Sbjct: 184 QDGVVPDPASLAEPWQRHVAAVLEEATLQL-PAGTWSQSGGRHGRHTEHLGYLLAEMQFL 242 Query: 242 QRAYPGAQW 250 QRAYPGA W Sbjct: 243 QRAYPGASW 251 >ref|YP_840880.1| phenylacetic acid degradation protein C [Ralstonia eutropha H16] emb|CAJ96150.1| phenylacetic acid degradation protein C [Ralstonia eutropha H16] Length = 251 Score = 358 bits (919), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 173/249 (69%), Positives = 202/249 (81%), Gaps = 1/249 (0%) Query: 2 TQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEG 61 K +Y+ RLGD LVL QRL+EWCG+GPALEED+AL NV+LDLIGQ RLWL YAAE+EG Sbjct: 4 NHKLEYLLRLGDATLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEG 63 Query: 62 QGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIA 121 GRN DQ+A+LRDAHQF N LLVE PNGSYADTLARQFLFD WHYFLL+GL +S+DARIA Sbjct: 64 AGRNADQMAYLRDAHQFRNPLLVEQPNGSYADTLARQFLFDTWHYFLLDGLQRSTDARIA 123 Query: 122 EIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQ 181 EIA K KEVTYHVRRS DL++RLGDG+E+SHRRMQ A + LWM++ ELF +DA D A+ Sbjct: 124 EIAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFNDLWMFSDELFESDAGDAALV 183 Query: 182 EQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQFL 241 + G+ + + W +HV VL EATL++ PAG W QSGG+ GRHTEHLGYLLAEMQFL Sbjct: 184 QAGLVPDPASLAEPWQRHVAAVLEEATLQL-PAGTWSQSGGRHGRHTEHLGYLLAEMQFL 242 Query: 242 QRAYPGAQW 250 QRAYPGA W Sbjct: 243 QRAYPGASW 251 >ref|YP_160275.1| hypothetical protein ebA5722 [Aromatoleum aromaticum EbN1] emb|CAI09374.1| similar to aerobic phenylacetate degradation protein [Aromatoleum aromaticum EbN1] Length = 251 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 160/250 (64%), Positives = 195/250 (78%), Gaps = 1/250 (0%) Query: 1 MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE 60 + K+ Y+ RLGDN LVLSQRL+EWCGKGPA EEDMAL N++LDLIGQAR+WLSYA E+E Sbjct: 3 LDDKSVYLMRLGDNALVLSQRLSEWCGKGPAFEEDMALTNIALDLIGQARMWLSYAGEVE 62 Query: 61 GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI 120 G+GR+ED LAF RD+H+F NLLLVE PNG YA TL RQF FD WH +L+ L +S+D RI Sbjct: 63 GRGRDEDALAFRRDSHEFTNLLLVEQPNGDYAQTLVRQFFFDAWHQLVLDALRRSADDRI 122 Query: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM 180 A+IA K KEV YH+RRS DL++RLGDG+ +S RRMQAA++ LWMYTGE+F AD ++ + Sbjct: 123 ADIASKAIKEVAYHLRRSIDLVVRLGDGSAESRRRMQAAVEELWMYTGEMFNADETEELL 182 Query: 181 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF 240 QG+A ++ W V++V EATL++ PAG WMQ GGK GRH EHLG LLAEMQF Sbjct: 183 GAQGLACDPSTLKDAWLAMVSEVFAEATLEL-PAGEWMQKGGKQGRHGEHLGLLLAEMQF 241 Query: 241 LQRAYPGAQW 250 LQRAYPGA W Sbjct: 242 LQRAYPGATW 251 >gb|EGP44973.1| phenylacetic acid degradation protein [Achromobacter xylosoxidans AXX-A] Length = 254 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 163/248 (65%), Positives = 191/248 (77%), Gaps = 3/248 (1%) Query: 6 DYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEGQGRN 65 +Y+ RLGD L+LSQRL W G GP LEED+AL N +LDL+GQAR+WL+ A E+EG GR+ Sbjct: 7 EYLLRLGDTPLILSQRLGAWTGHGPILEEDLALTNTALDLLGQARMWLTLAGEVEGAGRD 66 Query: 66 EDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIAEIAQ 125 ED LA+LRDAHQFHN LLVE PNG+YADT+ARQFLFDVWHYFLL+ L QSSD R+A IA Sbjct: 67 EDALAYLRDAHQFHNALLVERPNGNYADTMARQFLFDVWHYFLLQRLAQSSDERVAGIAA 126 Query: 126 KCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQEQGV 185 K KEVTYHVRRS+DL++RLGDGTE SH RMQAAID W +TGELF DA+DQ M +G+ Sbjct: 127 KSLKEVTYHVRRSSDLVVRLGDGTETSHARMQAAIDDAWRFTGELFTDDAIDQDMAARGI 186 Query: 186 ATALGEVQQKWTQHVTDVLLEATLKVPPAGLW---MQSGGKAGRHTEHLGYLLAEMQFLQ 242 L ++ W QHV +VL EATL VP A SGG+ GRHTE LGY+LAEMQ+L Sbjct: 187 GCELAALRAPWEQHVREVLEEATLTVPDAAAANHPAHSGGRQGRHTEELGYVLAEMQYLP 246 Query: 243 RAYPGAQW 250 RAYPGA W Sbjct: 247 RAYPGATW 254 >gb|EFV83484.1| phenylacetic acid degradation protein [Achromobacter xylosoxidans C54] Length = 254 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 160/248 (64%), Positives = 191/248 (77%), Gaps = 3/248 (1%) Query: 6 DYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEGQGRN 65 +Y+ RLGD L+LSQRL W G GP LEED+AL N +LDL+GQAR+WL+ A E+EG GR+ Sbjct: 7 EYLLRLGDTTLILSQRLGAWTGHGPILEEDLALTNTALDLLGQARMWLTLAGEVEGAGRD 66 Query: 66 EDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIAEIAQ 125 ED LA+LRDAHQFHN LLVE PNG+YADT+ARQFLFDVWHYFLL+ L QSSD R+A IA Sbjct: 67 EDALAYLRDAHQFHNALLVERPNGNYADTMARQFLFDVWHYFLLQRLAQSSDERVAGIAA 126 Query: 126 KCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQEQGV 185 K KEVTYHVRRS+D+++RLGDGTE SH RMQAA+D W +TGELF DA+DQ M +G+ Sbjct: 127 KSLKEVTYHVRRSSDMVVRLGDGTETSHARMQAALDDAWRFTGELFTDDAIDQDMAARGI 186 Query: 186 ATALGEVQQKWTQHVTDVLLEATLKVP---PAGLWMQSGGKAGRHTEHLGYLLAEMQFLQ 242 L ++ W QHV +VL EATL VP A GG+ GRHTE LGY+LAEMQ+L Sbjct: 187 GCELAALRAPWEQHVREVLEEATLTVPDSAAANHPAHRGGRQGRHTEELGYVLAEMQYLP 246 Query: 243 RAYPGAQW 250 RAYPGA+W Sbjct: 247 RAYPGAKW 254 >ref|YP_785904.1| phenylacetic acid degradation protein [Bordetella avium 197N] emb|CAJ48991.1| phenylacetic acid degradation protein [Bordetella avium 197N] Length = 254 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 160/252 (63%), Positives = 191/252 (75%), Gaps = 11/252 (4%) Query: 6 DYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEGQGRN 65 +Y+ RLGD+ L+LSQRL EWCG GP LEED+AL N +LDL+GQAR+WL+ AAE+EG GR+ Sbjct: 7 EYLLRLGDSTLILSQRLGEWCGHGPVLEEDLALTNTALDLLGQARMWLTLAAEVEGAGRD 66 Query: 66 EDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIAEIAQ 125 EDQLA+LRDAHQF N LLVE NG Y DT+ARQFLFDVWHYFLL GL S+D R+A IA Sbjct: 67 EDQLAYLRDAHQFRNCLLVERVNGHYGDTMARQFLFDVWHYFLLRGLTASTDERVAAIAA 126 Query: 126 KCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQEQGV 185 K KEVTYHVRR++DL++RLGDGTE+SHRRMQAA+DA W Y GELFV D +D + +G+ Sbjct: 127 KSLKEVTYHVRRASDLVVRLGDGTEESHRRMQAALDAAWPYAGELFVDDEVDLDLAGRGI 186 Query: 186 ATALGEVQQKWTQHVTDVLLEATLKVP-------PAGLWMQSGGKAGRHTEHLGYLLAEM 238 A ++ W HV +VL EATL VP PA GG GRHTE LGY+LAEM Sbjct: 187 CVARASLRAPWLAHVREVLEEATLIVPDEQEAFHPA----HRGGWQGRHTEALGYVLAEM 242 Query: 239 QFLQRAYPGAQW 250 Q LQR+YPGA+W Sbjct: 243 QHLQRSYPGARW 254 >ref|YP_001630534.1| phenylacetic acid degradation protein [Bordetella petrii DSM 12804] emb|CAP42265.1| phenylacetic acid degradation protein [Bordetella petrii] Length = 254 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 156/248 (62%), Positives = 188/248 (75%), Gaps = 3/248 (1%) Query: 6 DYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELEGQGRN 65 +Y+ RLGD LVLSQRL+EWCG GPALEED+AL N +LDL+GQAR+WL+ A E+EG GR+ Sbjct: 7 EYLLRLGDTTLVLSQRLSEWCGHGPALEEDLALTNTALDLLGQARMWLTLAGEVEGAGRD 66 Query: 66 EDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARIAEIAQ 125 ED LA+LR AH+F N LVE PNG Y DTLARQF FDVWHYFLL+ L QS+D R+A IA Sbjct: 67 EDALAYLRHAHEFRNATLVERPNGHYGDTLARQFFFDVWHYFLLQRLAQSADERVAAIAA 126 Query: 126 KCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAMQEQGV 185 K KEVTYHVRRS+DL++RLGDGT +SH RMQ A++A W YTGELF+ DA+D+ + +GV Sbjct: 127 KSLKEVTYHVRRSSDLVVRLGDGTPESHARMQEAVEAAWRYTGELFIDDAIDRDLAARGV 186 Query: 186 ATALGEVQQKWTQHVTDVLLEATLKVP---PAGLWMQSGGKAGRHTEHLGYLLAEMQFLQ 242 L +++ W HV +VL EATL +P AG GG+ GRHTE L YLLAEMQ L Sbjct: 187 GCELAALREPWLAHVREVLDEATLTMPELDEAGHAALQGGRQGRHTEALSYLLAEMQSLP 246 Query: 243 RAYPGAQW 250 RAYPGA W Sbjct: 247 RAYPGAVW 254