BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0127.p (173 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777501.1| transcription regulator protein [Herbaspiril... 356 8e-97 ref|YP_998675.1| TetR family transcriptional regulator [Verminep... 223 6e-57 ref|YP_001561602.1| TetR family transcriptional regulator [Delft... 205 2e-51 ref|YP_004491052.1| regulatory protein TetR [Delftia sp. Cs1-4] ... 192 2e-47 ref|YP_001561838.1| TetR family transcriptional regulator [Delft... 191 4e-47 ref|YP_002943157.1| TetR family transcriptional regulator [Vario... 190 6e-47 ref|YP_004153660.1| TetR family transcriptional regulator [Vario... 190 7e-47 ref|YP_001020189.1| putative transcriptional regulator of paa op... 184 3e-45 ref|YP_001791432.1| TetR family transcriptional regulator [Lepto... 180 9e-44 emb|CAZ90134.1| putative transcriptional regulator, TetR family ... 174 5e-42 >ref|YP_003777501.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65593.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 356 bits (913), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ Sbjct: 34 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 93 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK Sbjct: 94 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 153 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGLDGAGKKKR 173 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGLDGAGKKKR Sbjct: 154 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGLDGAGKKKR 206 >ref|YP_998675.1| TetR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM59657.1| transcriptional regulator, TetR family [Verminephrobacter eiseniae EF01-2] Length = 212 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 102/165 (61%), Positives = 129/165 (78%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MNEVA ACGLSK +LYHYF DK+ LL+HI +DH+ RL ALVD++ Q+ L PEPRLR L++ Sbjct: 34 MNEVAQACGLSKPTLYHYFRDKYHLLLHIADDHVSRLQALVDDIGQRQLPPEPRLRALIE 93 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 RFV+EY A++ HRVLTEDV+FL+P D +LN ER VV A A+A++ +RPE + + + K Sbjct: 94 RFVQEYAQARDAHRVLTEDVKFLQPEDSALVLNKERAVVAAFANALAQMRPETEAAGLTK 153 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGL 165 L MLLFGMINWMF WL+PDGEL HE MA +V+DL FGG+ AV L Sbjct: 154 ALTMLLFGMINWMFTWLRPDGELKHETMAPIVADLFFGGVVAVQL 198 >ref|YP_001561602.1| TetR family transcriptional regulator [Delftia acidovorans SPH-1] ref|YP_004485910.1| TetR family transcriptional regulator [Delftia sp. Cs1-4] gb|ABX33217.1| transcriptional regulator, TetR family [Delftia acidovorans SPH-1] gb|AEF87555.1| transcriptional regulator, TetR family [Delftia sp. Cs1-4] Length = 219 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/177 (57%), Positives = 130/177 (73%), Gaps = 6/177 (3%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MNEVA ACGLSK ++YHYF DK+ LL+ I + H+ RL +LVDEV L PEPRLR+L++ Sbjct: 34 MNEVAQACGLSKPTIYHYFRDKYALLVDITDGHMTRLQSLVDEVQSMGLPPEPRLRMLIE 93 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 RFV+EY A++ HRVLTEDVRFL+ D++R+L ER VV+ A A++ +RP+ D + ++K Sbjct: 94 RFVQEYAHARHAHRVLTEDVRFLQDDDRQRVLGKERAVVETFAQAVAQLRPDADGAGLSK 153 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGLDG------AGKK 171 LAMLLFGM+NWMF WL+PDG L HE MA VV+DL GG+ AV G AGKK Sbjct: 154 ALAMLLFGMMNWMFTWLRPDGSLDHEAMAPVVADLFLGGLPAVQTPGKPGHQTAGKK 210 >ref|YP_004491052.1| regulatory protein TetR [Delftia sp. Cs1-4] gb|AEF92697.1| regulatory protein TetR [Delftia sp. Cs1-4] Length = 211 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/173 (55%), Positives = 119/173 (68%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MNEVA ACG+SKA+LYHY DKH L + I E+H+ RL ALV++ Q PE RL L++ Sbjct: 35 MNEVAAACGVSKATLYHYVIDKHDLAVRIAEEHVLRLEALVNDTLQAHADPEQRLHALIR 94 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 F +EY AQN HRVLTEDVRFL DQ+RIL+ ER+VV A A ++ VR E S + K Sbjct: 95 GFGQEYAQAQNAHRVLTEDVRFLREQDQQRILDVERRVVAAFAQTIAQVRGEPADSALGK 154 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGLDGAGKKKR 173 PLAMLLFGMINW F WLKP G L H+ + +VS L FGG+ AV + A K ++ Sbjct: 155 PLAMLLFGMINWTFTWLKPGGTLDHDAIGTMVSQLFFGGVRAVSVPDAKKPRK 207 >ref|YP_001561838.1| TetR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX33453.1| transcriptional regulator, TetR family [Delftia acidovorans SPH-1] Length = 211 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 1/173 (0%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MNEVA ACG+SKA+LYHY DKH L + I E+H+ RL ALV++ Q PE RL L++ Sbjct: 35 MNEVAAACGVSKATLYHYVLDKHDLAVRIAEEHVLRLEALVNDTLQAHADPEQRLHALIR 94 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 F +EY AQN HRVLTEDVRFL DQ+RIL+ ER+VV A A ++ VR E S + K Sbjct: 95 GFGQEYAQAQNAHRVLTEDVRFLREEDQQRILDVERRVVAAFAQTIAQVRGEPADSALGK 154 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGLDGAGKKKR 173 PLAMLLFGMINW F WLKP G L H+ + +VS L FGG+ AV + GKK R Sbjct: 155 PLAMLLFGMINWTFTWLKPGGTLDHDAIGTMVSQLFFGGVRAVSVPD-GKKPR 206 >ref|YP_002943157.1| TetR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS17891.1| transcriptional regulator, TetR family [Variovorax paradoxus S110] Length = 211 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 93/163 (57%), Positives = 113/163 (69%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MN+VA AC LSKA+LYHY+ DK LL+ I E H+ +L ALV E E RLR + Sbjct: 34 MNQVAEACNLSKATLYHYYKDKSSLLISIAETHVSKLAALVAEEEASTHTDEERLRRFIY 93 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 R VEEY AQ+ HRVLT+DVRFLE D++R+LN ER+VV A A+SA+RP +AK Sbjct: 94 RIVEEYAGAQDAHRVLTDDVRFLEEEDRERVLNQEREVVAGFARAVSALRPGAPSDDLAK 153 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAV 163 PL MLLFGMINWMF W+KP G L H +A +V+DL GGIGAV Sbjct: 154 PLTMLLFGMINWMFTWMKPGGRLDHASIAPIVADLFLGGIGAV 196 >ref|YP_004153660.1| TetR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35549.1| regulatory protein TetR [Variovorax paradoxus EPS] Length = 216 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 92/163 (56%), Positives = 114/163 (69%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MN+VA AC LSKA+LYHY+ DK LL+ I E H+ +L ALV E E RLR + Sbjct: 34 MNQVAEACNLSKATLYHYYKDKSSLLISIAETHVSKLAALVAEEEASTQTDEERLRRFIY 93 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 R VEEY AQ+ HRVLT+DVRFLE D++R+L+ ER+VV A A+SA+RP +AK Sbjct: 94 RIVEEYAGAQDAHRVLTDDVRFLEEEDRERVLDKEREVVAGFARAVSALRPGAPSDDLAK 153 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAV 163 PL MLLFGMINWMF W+KP G+L H +A +V+DL GGIGAV Sbjct: 154 PLTMLLFGMINWMFTWMKPSGKLDHAAIAPIVADLFLGGIGAV 196 >ref|YP_001020189.1| putative transcriptional regulator of paa operon [Methylibium petroleiphilum PM1] gb|ABM93954.1| putative transcriptional regulator of paa operon [Methylibium petroleiphilum PM1] Length = 208 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/161 (59%), Positives = 121/161 (75%), Gaps = 1/161 (0%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEV-AQQDLAPEPRLRLLV 59 MN+VA ACG+SKA+LYHY+ DK+ LL+ I E H+ RL LV+EV A LAPE RLR L+ Sbjct: 34 MNQVAEACGVSKATLYHYYRDKYALLVSIAEGHVSRLQGLVEEVDADATLAPERRLRELI 93 Query: 60 QRFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMA 119 R V EY AQ+ HRVLTEDV+FLE GD++RIL ER+VV + A A+ A+RP+L + MA Sbjct: 94 ARLVGEYAGAQDAHRVLTEDVKFLEEGDRERILGKERQVVASFAAAVVALRPDLKEAAMA 153 Query: 120 KPLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGI 160 KPL MLLFGM+NWMF W+KP+G L H +A +V+DL GG+ Sbjct: 154 KPLTMLLFGMVNWMFTWVKPEGPLDHAALAPIVADLFLGGL 194 >ref|YP_001791432.1| TetR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB34667.1| transcriptional regulator, TetR family [Leptothrix cholodnii SP-6] Length = 205 Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 96/165 (58%), Positives = 121/165 (73%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQ 60 MNEVA ACGL+K +LYHY DK LL+ ICEDHI L LVDEVA + L P+ LR L+ Sbjct: 34 MNEVAAACGLTKPALYHYVRDKQALLLQICEDHIVTLQELVDEVAARQLLPDEHLRALIL 93 Query: 61 RFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAK 120 FV+ Y DAQ++HRVLTEDVRFL +++++L G+R+VV A A A++AVRP + + + K Sbjct: 94 AFVQAYADAQHQHRVLTEDVRFLGDAEREQVLEGQRQVVAAFARAVAAVRPGIADAALHK 153 Query: 121 PLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGL 165 PL MLLFGMINWMF WL+P G L+H MA VV+DL GG+ AV L Sbjct: 154 PLTMLLFGMINWMFTWLQPGGALSHADMAPVVADLFLGGLAAVRL 198 >emb|CAZ90134.1| putative transcriptional regulator, TetR family [Thiomonas sp. 3As] Length = 212 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 90/167 (53%), Positives = 114/167 (68%), Gaps = 4/167 (2%) Query: 1 MNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLCALVDEVAQQDLAPEPR--LRLL 58 MN+VA A LSKA+LYHYF DK+ LL HI E H+ RL + EV + L EPR L L Sbjct: 34 MNQVADASALSKAALYHYFRDKYALLTHIAEAHVRRLLEVTLEV--ETLCGEPRRFLEAL 91 Query: 59 VQRFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRM 118 ++RFV EY AQ+ HRVLTEDVRFLEP D+ RIL ER+VV A A++A RPEL+ + + Sbjct: 92 IERFVREYASAQDAHRVLTEDVRFLEPVDRDRILGIEREVVAHFARAIAATRPELEPASL 151 Query: 119 AKPLAMLLFGMINWMFMWLKPDGELTHERMAVVVSDLLFGGIGAVGL 165 KPLAMLLFGMINW+F W KP L + +A +V+DL G+ + + Sbjct: 152 DKPLAMLLFGMINWLFTWFKPGQPLDYPTLAPLVADLFLNGVSGLHI 198