BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0079.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777432.1| transcription regulator protein [Herbaspiril... 477 e-133 ref|ZP_04667521.1| conserved hypothetical protein [Clostridiales... 114 9e-24 ref|YP_003873851.1| transcriptional regulatory protein [Spirocha... 113 2e-23 gb|EGC95975.1| putative transcriptional regulator [Escherichia f... 112 4e-23 dbj|BAI54184.1| putative transcriptional regulator [Escherichia ... 111 8e-23 gb|AEJ60913.1| GntR domain protein [Spirochaeta thermophila DSM ... 110 2e-22 ref|ZP_02903562.1| GntR family regulator protein [Escherichia al... 110 3e-22 ref|YP_002406694.1| putative GntR family regulator [Escherichia ... 109 3e-22 ref|ZP_06124422.2| regulator protein, GntR family [Providencia r... 107 2e-21 ref|YP_001230957.1| GntR domain-containing protein [Geobacter ur... 104 9e-21 >ref|YP_003777432.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65524.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MTSKKTPPNLQLQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREA 60 MTSKKTPPNLQLQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREA Sbjct: 1 MTSKKTPPNLQLQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREA 60 Query: 61 TNALAGRGLIAVSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVL 120 TNALAGRGLIAVSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVL Sbjct: 61 TNALAGRGLIAVSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVL 120 Query: 121 AAEHRTPADIDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPI 180 AAEHRTPADIDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPI Sbjct: 121 AAEHRTPADIDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPI 180 Query: 181 LFDSTRSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD 236 LFDSTRSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD Sbjct: 181 LFDSTRSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD 236 >ref|ZP_04667521.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gb|EEQ60742.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 18 SDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGKS 77 S++I + I I KL+PG SLP E EL ++F SRPTVREA L +GLI+V+ G Sbjct: 18 SEEIVNQIQDSILAGKLKPGDSLPPERELIKMFARSRPTVREALRVLEMKGLISVTGGGG 77 Query: 78 PTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNAIV 137 + + LA ITP +I + R+ L+L AA RT DI+ L ++ Sbjct: 78 TLICKPETSQLEETLKIMLAMHDITPEEIYDARNMLELTTIRFAASKRTQEDIEELKELI 137 Query: 138 AQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHTR---- 193 + A + N+E F+ LD FHE + +A++N + ++ + + ++ HS R Sbjct: 138 EREKACVDNIELFTSLDRDFHELIAKASKNSIFEILVRALRNPMQNTI--AHSIMRMGPD 195 Query: 194 -NQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD 236 ++E D ++ H I I++ + + A + H +D +KR + Sbjct: 196 NYKKEQDILIQCHMEILQCIVDQSEARAVECMKEH-IDQFKRIN 238 >ref|YP_003873851.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gb|ADN01578.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 245 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 10/221 (4%) Query: 17 ISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGK 76 +S +IADHI I KL PG+ LP+E EL +LFGVSRPT+REA L + +I + GK Sbjct: 11 LSREIADHIKDLIRRKKLNPGEKLPNEIELAQLFGVSRPTIREAIKTLVSQNIIEIVRGK 70 Query: 77 SPTVLPLSKVPFSNLAQHGLATQQITPIQ--ILEVRHSLDLQAAVLAAEHRTPADIDRLN 134 V S+ P GL +Q ++EVR ++ A LAAE RTP DI R+ Sbjct: 71 GTYV---SRTPGLQEDPLGLEFLMDENLQLALIEVRLIVEPPVAKLAAERRTPEDIARIE 127 Query: 135 AIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHT-R 193 I+A+M + + + + FH ++ +AT+NP++ ++ P++ D+ R ++ R Sbjct: 128 EILARMEQEIRDGQIGLVPEMEFHRSLAEATRNPVIMRLV----PLITDAIRKIYGEAPR 183 Query: 194 NQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKR 234 +E L H++I + I G+ A + + H +Y+R Sbjct: 184 TLEEHREALEEHRDILSHIREGHGEKAGQAMKHHLEKSYRR 224 >gb|EGC95975.1| putative transcriptional regulator [Escherichia fergusonii ECD227] Length = 239 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 1/218 (0%) Query: 12 LQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIA 71 L V +S Q+ +HI+ IAE KL PG +PSE +L + GVSR VREA +LA G++ Sbjct: 7 LTNVTLSSQVKNHILNLIAEQKLTPGMPVPSEVQLIQKLGVSRGIVREAYRSLAALGILE 66 Query: 72 VSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADID 131 SGK P + + LAT+Q+T QIL+VR L+L AA + D Sbjct: 67 THSGKVPRIKKFDDEVLRVVFGFALATEQVTTEQILQVRRWLELGVVESAARNGEEEDFA 126 Query: 132 RLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSH 191 L A +AQ+ +VE+F D FH+ + A++NPL ++ + L S + S Sbjct: 127 SLRAEMAQIREQFYDVESFITHDIRFHQLLAVASKNPLFMMLLQALHQQLRQSIQEGLSA 186 Query: 192 TRNQQEWDSVLLN-HQNIAAAIINGNASAARRLVDIHY 228 +Q+E+ ++ HQ I A+ + A + + H+ Sbjct: 187 QSDQKEYGKHIIKLHQTICDAVCARDVETATQAMKSHF 224 >dbj|BAI54184.1| putative transcriptional regulator [Escherichia coli SE15] gb|AEG35469.1| putative transcriptional regulator [Escherichia coli NA114] Length = 237 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 1/218 (0%) Query: 12 LQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIA 71 L V +S Q+ +HI+ IAE KL PG +PSE +L + GVSR VREA +LA G++ Sbjct: 7 LTSVTLSSQVKNHILNLIAEQKLTPGMPVPSEVQLIQKLGVSRGIVREAYRSLAALGILE 66 Query: 72 VSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADID 131 SGK P + + LAT+Q+T QIL+VR L+L AA + D Sbjct: 67 THSGKVPRIKKFDDEVLRVVFGFALATEQVTTEQILQVRRWLELGVVEAAARNGEEEDFA 126 Query: 132 RLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSH 191 L A +A++ +VE+F D FH+ + A++NPL ++ + L S + + Sbjct: 127 NLRAEMAKIREQFNDVESFITHDIRFHQLLAVASKNPLFMMLLQALHQQLRQSIQEGLNA 186 Query: 192 TRNQQEW-DSVLLNHQNIAAAIINGNASAARRLVDIHY 228 +Q+E+ + ++ HQ I A+ + A + + H+ Sbjct: 187 QSDQKEYGNHIITLHQKICDAVCARDVETATQAMKSHF 224 >gb|AEJ60913.1| GntR domain protein [Spirochaeta thermophila DSM 6578] Length = 245 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 10/221 (4%) Query: 17 ISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGK 76 +S +IADHI I KL PG+ LP+E EL +LFGVSRPT+REA L + +I + GK Sbjct: 11 LSREIADHIKDLIRRKKLNPGEKLPNEIELAQLFGVSRPTIREAIKTLVSQNIIEIVRGK 70 Query: 77 SPTVLPLSKVPFSNLAQHGLATQQITPIQ--ILEVRHSLDLQAAVLAAEHRTPADIDRLN 134 V S+ P GL +Q ++EVR ++ A LAAE RTP DI + Sbjct: 71 GTYV---SRTPGLQEDPLGLEFLMDENLQLALIEVRLIVEPPVAKLAAERRTPEDIAHIE 127 Query: 135 AIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHT-R 193 I+A+M + + + + FH ++ +AT+NP++ ++ P++ D+ R ++ R Sbjct: 128 DILARMEQEIRDGQIGLVPEMEFHRSLAEATRNPVIMRLV----PLITDAIRKIYGEAPR 183 Query: 194 NQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKR 234 +E L H++I + I G+ A + + H +Y+R Sbjct: 184 TLEEHREALEEHRDILSHIREGHGEKAGQAMKHHLEKSYRR 224 >ref|ZP_02903562.1| GntR family regulator protein [Escherichia albertii TW07627] gb|EDS91112.1| GntR family regulator protein [Escherichia albertii TW07627] Length = 234 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 1/218 (0%) Query: 12 LQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIA 71 L V +S Q+ +HI+ I+E KL PG +PSE +L + GVSR VREA +LA G++ Sbjct: 7 LTNVTLSSQVKNHILNLISEQKLTPGMPVPSEVQLIQKLGVSRGIVREAYRSLAALGILE 66 Query: 72 VSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADID 131 SGK P + + LAT+Q+T QIL+VR L+L AA + D Sbjct: 67 THSGKVPRIKKFDDEVLRVVFGFALATEQVTTEQILQVRRWLELGVVEAAARNGEEEDFA 126 Query: 132 RLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSH 191 L A +AQ+ +VE+F D FH+ + A++NPL ++ + L S + Sbjct: 127 NLRAEMAQIREQFDDVESFITHDIRFHQLLAVASKNPLFMMLLQALHQQLRQSILEGLNA 186 Query: 192 TRNQQEWDSVLLN-HQNIAAAIINGNASAARRLVDIHY 228 +Q+E+ ++ HQ I A+ + A + + H+ Sbjct: 187 QSDQKEYGQKIIKLHQMICDAVCARDVETATQAMKSHF 224 >ref|YP_002406694.1| putative GntR family regulator [Escherichia coli IAI39] emb|CAR16805.1| putative GntR family regulator [Escherichia coli IAI39] Length = 237 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 1/218 (0%) Query: 12 LQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIA 71 L V +S Q+ +HI+ IAE KL PG +PSE +L + GVSR VREA +LA G++ Sbjct: 7 LTSVTLSSQVKNHILNLIAEQKLTPGMPVPSEIQLIQKLGVSRGIVREAYRSLAALGILE 66 Query: 72 VSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADID 131 SGK P + + LAT+Q+T QIL+VR L+L AA + D Sbjct: 67 THSGKVPRIKKFDDEVLRVVFGFALATEQVTTEQILQVRRWLELGVVEAAARNGGEEDFA 126 Query: 132 RLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSH 191 L A +A++ +VE+F D FH+ + A++NPL ++ + L S + + Sbjct: 127 NLRAEMAKIREQFDDVESFITHDIRFHQLLAVASKNPLFMMLLQALHQQLRQSIQEGLNA 186 Query: 192 TRNQQEW-DSVLLNHQNIAAAIINGNASAARRLVDIHY 228 +Q+E+ + ++ HQ I A+ + A + H+ Sbjct: 187 QSDQKEYGNHIITLHQKICDAVCARDVETATLAMKSHF 224 >ref|ZP_06124422.2| regulator protein, GntR family [Providencia rettgeri DSM 1131] gb|EFE54935.1| regulator protein, GntR family [Providencia rettgeri DSM 1131] Length = 238 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 12 LQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIA 71 +++ +S+Q+ +++ I++ L PG +PSE E+ GVSR VREA +L+ G++ Sbjct: 12 IEKQTLSEQVRSYVLSLISQSNLNPGDEIPSEKEIIERLGVSRGVVREAFQSLSILGILD 71 Query: 72 VSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADID 131 +SSGK P + ++ P + H + TQQ+ QIL +R ++++ +AVLAA H D Sbjct: 72 ISSGKKPKIQKINSNPLETIFNHAIVTQQVNYQQILGLRRAIEVDSAVLAAMHGNKNDYI 131 Query: 132 RLNAIVAQMPAAL---GNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSV 188 +L I +M +L + + F D FH + + +QNPL + ++ + L S + Sbjct: 132 KLRKIADKMRKSLLSSNDWDLFIESDIDFHLTLAEMSQNPLYALMLKALRGALGGSISAG 191 Query: 189 HSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHY 228 + N E ++ H +I +I + A +D H+ Sbjct: 192 LLNQNNHDEHKKIIDIHFDILESIEKQDFVATGLKMDTHF 231 >ref|YP_001230957.1| GntR domain-containing protein [Geobacter uraniireducens Rf4] gb|ABQ26384.1| transcriptional regulator, GntR family [Geobacter uraniireducens Rf4] Length = 239 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 105/218 (48%), Gaps = 1/218 (0%) Query: 18 SDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGKS 77 S QIA+ I I + PG LP E EL LFGVSRP+VREA N LA GL+ G Sbjct: 12 STQIAEQIRTSILSGEFNPGDKLPPERELAELFGVSRPSVREALNVLAASGLVEAFQGGG 71 Query: 78 PTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNAIV 137 V L + P + + + ++EVR ++ A AA+ P DI RL AIV Sbjct: 72 TVVKSLVETPTGTPLSELIRGEGERALDVIEVRKGMESWTAYYAAQRALPEDIVRLQAIV 131 Query: 138 AQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHTRNQQE 197 M L ++ LDA FH + +AT N + ++ I + + R+V +E Sbjct: 132 DAMARNLDGAKSSEDLDANFHTVIARATHNVVWLHMMQSIFDAMKEFQRNVWRAVYLTEE 191 Query: 198 WDSVLL-NHQNIAAAIINGNASAARRLVDIHYVDAYKR 234 +L +H++I AI + N AR L+ +H A +R Sbjct: 192 DHKMLYTHHRSIFEAIRDKNPEQARDLMLLHLTFAEQR 229