BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0069.p (501 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777421.1| transmembrane protein [Herbaspirillum serope... 995 0.0 ref|YP_003778010.1| transmembrane protein [Herbaspirillum serope... 608 e-172 ref|YP_003777874.1| transmembrane protein [Herbaspirillum serope... 409 e-112 ref|YP_001115375.1| diguanylate cyclase [Burkholderia vietnamien... 341 1e-91 ref|YP_001115312.1| diguanylate cyclase [Burkholderia vietnamien... 339 9e-91 ref|YP_001584663.1| diguanylate cyclase [Burkholderia multivoran... 335 9e-90 ref|YP_002230170.1| putative diguanylate cyclase [Burkholderia c... 332 8e-89 ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria ... 332 8e-89 ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMM... 332 1e-88 ref|ZP_02892013.1| diguanylate cyclase [Burkholderia ambifaria I... 331 2e-88 >ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65513.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/501 (97%), Positives = 494/501 (98%) Query: 1 MGRLQKYLALILGVIIMMVLTICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEIL 60 MGRLQKYLALILG+IIMMVL+ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEIL Sbjct: 1 MGRLQKYLALILGLIIMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEIL 60 Query: 61 SLAMDTLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSAS 120 SLAMDTLAYRYQHPLDLT+ASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSAS Sbjct: 61 SLAMDTLAYRYQHPLDLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSAS 120 Query: 121 PSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLM 180 PSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLM Sbjct: 121 PSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLM 180 Query: 181 ALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLV 240 ALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLV Sbjct: 181 ALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLV 240 Query: 241 DNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTA 300 DNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTA Sbjct: 241 DNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTA 300 Query: 301 LAGVLLMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGF 360 LAGVLLMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPT GF Sbjct: 301 LAGVLLMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGF 360 Query: 361 STLFIDVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTD 420 STLFIDVD+FKRYNDTYGHEMGDTVLQAVAAVLR HLQRQNDLAGRYGGEEFVVLLEQTD Sbjct: 361 STLFIDVDYFKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTD 420 Query: 421 EQGALRMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYI 480 E GALRMAQQLCEAIY+RGIPHSGSPLGVISVSIGVATMNRA HQRMEDVLNAADHA YI Sbjct: 421 EHGALRMAQQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYI 480 Query: 481 AKREGRNRVCVAHPCQNDPPA 501 AKREGRNRVCVAHP QNDP A Sbjct: 481 AKREGRNRVCVAHPGQNDPLA 501 >ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66102.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 298/492 (60%), Positives = 380/492 (77%), Gaps = 7/492 (1%) Query: 1 MGRLQKYLALILGVIIMMVLTICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEIL 60 + +L+ YL +IL + ++MV+ I ++LY+ Y+QTR SA++ A+NVTL+ QRAISRN+E+L Sbjct: 22 IKQLKNYLVVILAIAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEML 81 Query: 61 SLAMDTLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSR---R 117 SL++DTLAYR+QHPL +D +RY YLFGST HI +A+LDADG V+V+SR Sbjct: 82 SLSLDTLAYRFQHPLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRG 141 Query: 118 SASPSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGV 177 + +P +Y++R YF HRDS GL++SRP++A+LGNEL VVVLSKRLS +DGSF GV Sbjct: 142 NGAP----HYADRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGV 197 Query: 178 VLMALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRA 237 V+MALD++YFR+LF GL LG++GI+SLYSD+G+ YMRVPY + IGR+I+ NFQRLRA Sbjct: 198 VVMALDLAYFRELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRA 257 Query: 238 MLVDNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLII 297 ML + +G+FFA A DGV RLYTFRRIP +PLIV +G +E IFKTW T Y+VL+ L I Sbjct: 258 MLSEEEGSFFAHATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAI 317 Query: 298 FTALAGVLLMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPT 357 F L LL+ VR+EL +RV AE+QLE LARTDGLT LLNRR+LDEAL A W+R QR+ Sbjct: 318 FGLLTAWLLLHVRQELRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWERCQRNLG 377 Query: 358 VGFSTLFIDVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLE 417 FS LFIDVD+FK YNDTYGH++GDTVL+ VAA L A L R D AGRYGGEEFVVLLE Sbjct: 378 ASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLE 437 Query: 418 QTDEQGALRMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHA 477 QTD QGA MAQ+LC+A+ R I H+ SPL V+++S+GVAT+ R H+R+EDVLNAAD A Sbjct: 438 QTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAA 497 Query: 478 PYIAKREGRNRV 489 Y AK+ GR+RV Sbjct: 498 LYRAKQAGRDRV 509 >ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/474 (45%), Positives = 303/474 (63%), Gaps = 5/474 (1%) Query: 18 MVLTICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAYRYQHPLDL 77 M T+ A LY+ +RQ +AI N+ I QR+ISRN+E+L+LA+D+L +RY+H L Sbjct: 1 MTATVSCAVLYQSHRQVERAAIEHGANIARIAQRSISRNVELLTLALDSLTWRYRHT-QL 59 Query: 78 TNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVNYSERTYFTVHR 137 +++ +L G A ++ AL I+D DG + V S + S + Y++ +FT H+ Sbjct: 60 HEMPLQQKMEFLLGENIEARYVAALGIVDTDGELVVGSA-ALSQILPGPYAQSDFFTAHQ 118 Query: 138 D---SADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDLFTGL 194 D GL+IS P+ L + VVVLSKRL++ DGSF G+ LM L + YFRDLF GL Sbjct: 119 THHAQGDTGLYISAPLTVRLERRMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGL 178 Query: 195 TLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARAHTDG 254 TL DG++SLYS DG+ YMR+PY+ + IG + + + +R+ + G++FARA DG Sbjct: 179 TLENDGVISLYSADGLAYMRIPYNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDG 238 Query: 255 VERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVLLMLVRRELL 314 LYTF R+P V +GR+ IF+ WY+ LY+VL L+ F + L+ VR EL Sbjct: 239 PRWLYTFARVPGTGWTVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQ 298 Query: 315 KRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFIDVDHFKRYN 374 +R A ++QLE+LARTD LT LLNRR+LDEAL W+R++ +P FS LF+DVD FK YN Sbjct: 299 RRSALDQQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYN 358 Query: 375 DTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQLCEA 434 DTYGH+ GD L AV+ + A + R +D +GRYGGEEFVVLL TD GA +A+++ A Sbjct: 359 DTYGHKAGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISA 418 Query: 435 IYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNR 488 I S IPH SP +++VSIGV ++ R H +EDV+ AD A Y AK++GRN+ Sbjct: 419 IQSLKIPHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472 >ref|YP_001115375.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gb|ABO59120.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 507 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 194/484 (40%), Positives = 283/484 (58%), Gaps = 8/484 (1%) Query: 7 YLALILGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 YL + +GV+I L +C L++ A A N+ L+ +R I RN E+ L++ Sbjct: 9 YLIVAIGVVIACALMGLCVLQLFQSRHDALERASESARNLGLMAERDIERNFELYDLSLQ 68 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVV 125 LA+ Q P D+ A+ R LF +A I + +LD DG + + S Sbjct: 69 ALAHGLQRP-DVMAAAPALRRAVLFDHAMSAAFIGSQLVLDTDGNIVLDSAHDVPRQG-- 125 Query: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 N+++ YFTVHRD+AD GL+IS P + L P + LS+R+S DGSF G+ L+ L++ Sbjct: 126 NFADHKYFTVHRDNADVGLYISDPFISRLSAGTPSMALSRRISNPDGSFAGIALIGLNLE 185 Query: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 YF LF GL+LG+ G +SL DG+ MR P+ +GR+I+ F+R + +G Sbjct: 186 YFHHLFAGLSLGQHGSISLIGTDGIMVMRQPFTDGIVGRDISQASTFRRF---MSAREGV 242 Query: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVL 305 F A DGV RLY F+ +P+ PLI+++ +E+ I+ W+ ++ L+ F A VL Sbjct: 243 FSETASIDGVRRLYYFKHLPELPLIIMVAEAEQDIYAAWWQRAVAIGALVGTFGAAFIVL 302 Query: 306 LMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFI 365 M++ ++L +R+ AE +L LARTDGLTGL NRRS E L W+R+QR+ +V FS LF+ Sbjct: 303 SMVLSKQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLEREWRRAQRAHSV-FSLLFV 361 Query: 366 DVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGAL 425 DVD FK YNDTYGH+ GD L AVA + +++R D A RYGGEEFVVLL T QGA+ Sbjct: 362 DVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDTPRQGAI 421 Query: 426 RMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREG 485 +A+++ AI+ + H GS G ++ SIG+A+ + ++ AAD A Y AK G Sbjct: 422 EIAERIRGAIHDLALEHVGSEYGRVTASIGMASSTPGQDGDPGALIKAADEALYYAKATG 481 Query: 486 RNRV 489 RN+V Sbjct: 482 RNKV 485 >ref|YP_001115312.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gb|ABO59057.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 516 Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 194/486 (39%), Positives = 282/486 (58%), Gaps = 8/486 (1%) Query: 7 YLALILGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 YL + +GV+I L +C L++ A A N+ L+ +R I RN E+ L++ Sbjct: 9 YLIVAIGVVIACALMGLCVLQLFQSRHDALERASESARNLGLMAERDIERNFELYDLSLQ 68 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVV 125 LA+ Q P D+ A+ R LF +A I + +LD DG + + S Sbjct: 69 ALAHGLQRP-DVMAAAPALRRAVLFDHAMSAAFIGSQLVLDTDGNIVLDSAHDVPRQG-- 125 Query: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 N+++ YFTVHRD+AD GL+IS P + L P + LS+R+S DGSF G+ L+ L++ Sbjct: 126 NFADHKYFTVHRDNADVGLYISDPFISRLSAGTPSMALSRRISNPDGSFAGIALIGLNLE 185 Query: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 YF LF GL+LG+ G +SL DG+ MR P+ +GR+I+ F+R + +G Sbjct: 186 YFHHLFAGLSLGQHGSISLIGTDGIMVMRQPFTDGIVGRDISQASTFRRF---MSAREGV 242 Query: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVL 305 F A DGV RLY F+ +P+ PLI+++ +E+ I+ W+ ++ L+ F A VL Sbjct: 243 FSETASIDGVRRLYYFKHLPELPLIIMVAEAEQDIYAAWWQRAVAIGALVGTFGAAFIVL 302 Query: 306 LMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFI 365 M++ ++L +R+ AE +L LARTDGLTGL NRRS E L W+R+QR+ +V FS LF+ Sbjct: 303 SMVLSKQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLEREWRRAQRAHSV-FSLLFV 361 Query: 366 DVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGAL 425 DVD FK YNDTYGH+ GD L AVA + +++R D A RYGGEEFVVLL T QGA+ Sbjct: 362 DVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDTPRQGAI 421 Query: 426 RMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREG 485 +A+++ AI + H GS G ++ SIG+A+ + ++ AAD A Y AK G Sbjct: 422 EIAERIRGAIDDLALEHVGSEYGRVTASIGMASSTPGQDGDPGALIKAADEALYYAKATG 481 Query: 486 RNRVCV 491 RN+V Sbjct: 482 RNKVST 487 >ref|YP_001584663.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] ref|YP_001948218.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] gb|ABX18371.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] dbj|BAG45682.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] Length = 492 Score = 335 bits (860), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 195/485 (40%), Positives = 290/485 (59%), Gaps = 8/485 (1%) Query: 12 LGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAYR 70 +GV+I L +C L++ + A + N+ L+ +R I+RN+E+ +L+++ + Sbjct: 14 VGVLIAFALMGLCILQLFQSRQDALDRARETSRNLALVAERDITRNVELYNLSLEAVLQG 73 Query: 71 YQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVNYSER 130 + P D+ AS R LF A ++ ++ +LDA G + + S+ N+S+R Sbjct: 74 LRRP-DVMAASPALRRGVLFDHAMTAQYLGSMLVLDAQGNIVLDSQNDVPRHG--NFSDR 130 Query: 131 TYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDL 190 YFTVHRD AD GL++S P + L P +VLS+R+S DGSF GV L+A+++ YF L Sbjct: 131 KYFTVHRDRADVGLYVSDPFASRLRGGTPSIVLSRRVSNPDGSFAGVALIAINLEYFHKL 190 Query: 191 FTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARA 250 F GL LG G +SL DG+ MR PY ++IGR+I+ F+R R+ +G+F R+ Sbjct: 191 FAGLALGPHGSISLIGTDGIMVMRQPYELNTIGRDISQAATFRRFRSA---PEGSFLERS 247 Query: 251 HTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVLLMLVR 310 DGV RLY F+ +P+ PLIV++ +E+ I+ W+ ++ L+ F A L +L+ Sbjct: 248 SIDGVRRLYYFKTLPNLPLIVMVAEAEQDIYAAWHRRALTIGALVATFGAAFIALSVLLG 307 Query: 311 RELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFIDVDHF 370 +L +R+ AE +L LARTDGLTGL NRRS E L W+R++R +V FS LF+DVD F Sbjct: 308 AQLRRRMRAESELILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSV-FSLLFVDVDRF 366 Query: 371 KRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGALRMAQQ 430 K YNDTYGH+ GD L AVA + +++R D+A RYGGEEFVVLL T E GA ++A++ Sbjct: 367 KAYNDTYGHQAGDDALAAVARCIGENIRRPADVAARYGGEEFVVLLPDTAENGAAQIAER 426 Query: 431 LCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREGRNRVC 490 + AI G+ H GS G ++ SIG+A+ + + ++ AAD A Y AK GRN+V Sbjct: 427 IRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALYYAKATGRNKVT 486 Query: 491 VAHPC 495 P Sbjct: 487 QFEPT 491 >ref|YP_002230170.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] ref|YP_002231954.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] emb|CAR51324.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] emb|CAR53152.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 492 Score = 332 bits (852), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 190/485 (39%), Positives = 280/485 (57%), Gaps = 8/485 (1%) Query: 7 YLALILGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 Y + +G++I L +C L++ A + N+ L+ +R I RN+E+ L++ Sbjct: 9 YFVVAVGIVIACALMGLCVLQLFQSRHDALERASETSRNLGLMAERDIERNLELYDLSLQ 68 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVV 125 L + Q P D+ A+ R LF A I + +LDADG + + S Sbjct: 69 ALIHGLQRP-DVMAAAPALRREALFDHAMTAQFIGSQLVLDADGNIILDSANDVPRKG-- 125 Query: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 N+++R YFT+HRD+ + GL++S P + L + + LS+R+S DGSF G+ L+A+++ Sbjct: 126 NFADRRYFTIHRDNPNVGLYVSDPFVSRLRAGMLSIALSRRISNPDGSFAGIALIAINLE 185 Query: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 YF LF GL+LG+ G +SL DG+ MR PY +IGR+I FQR R+ +G+ Sbjct: 186 YFHKLFAGLSLGQHGSISLIGKDGIMVMRQPYDVRTIGRDIGKAATFQRFRSA---PEGS 242 Query: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVL 305 F A DGV RLY F+ +P PLI+++ +E+ I+ W ++ LL+ F A L Sbjct: 243 FSETASIDGVRRLYYFKNLPTLPLIIMVAEAEQDIYAAWRRRAETIGLLVATFGAAFIAL 302 Query: 306 LMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFI 365 + + +L +R+ AE +LE LARTDGLTGL NRRS E L W+R++R+ +V FS LF+ Sbjct: 303 SVFLGVQLRRRMRAESELELLARTDGLTGLNNRRSFGEVLDREWRRARRAHSV-FSLLFV 361 Query: 366 DVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGAL 425 DVD FK YNDTYGH+ GD L AVA + +++R D A RYGGEEFVVLL T GA Sbjct: 362 DVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPTDTAARYGGEEFVVLLPDTPPTGAA 421 Query: 426 RMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREG 485 + A+++ AI + H+GS G ++ SIG+A+ + V+ AAD A Y AK G Sbjct: 422 QTAERIRAAINELALEHAGSEYGRVTASIGLASWTPDQDGDPGAVIKAADEALYYAKAAG 481 Query: 486 RNRVC 490 RN+V Sbjct: 482 RNKVS 486 >ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gb|ACB63516.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 492 Score = 332 bits (852), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 191/489 (39%), Positives = 282/489 (57%), Gaps = 8/489 (1%) Query: 7 YLALILGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 Y+ + +G++I L +C L++ A + N+ LI +R I RN E+ L++ Sbjct: 9 YVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLIAERDIERNFELYDLSLQ 68 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVV 125 + Q P D+ +A+ R LF +A I + +LDA+G + + S Sbjct: 69 AVIQGLQRP-DVMSAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSANDVPRKG-- 125 Query: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 N+++R YFTVHRD+ D GL++S P + L + +VLS+R+S DGSF GV L+A+++ Sbjct: 126 NFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLCIVLSRRISNPDGSFGGVALIAINLE 185 Query: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 YF LF GL+LG+ G MSL DG+ MR PY+ S +GR+I+ F+R + ++G Sbjct: 186 YFHQLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKAATFRRFQRA---SEGV 242 Query: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVL 305 F A DGV RLY F+ +P PLI+++ E+ ++ W ++ L+ F L Sbjct: 243 FSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIAL 302 Query: 306 LMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFI 365 L+ +L +R+ AE +L LARTDGLTGL NRRS E L W+R++R+ +V FS LF+ Sbjct: 303 SFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV-FSLLFV 361 Query: 366 DVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGAL 425 DVD FK YNDTYGH+ GD L AVA + +++R D A RYGGEEFVVLL T GA Sbjct: 362 DVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGAA 421 Query: 426 RMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREG 485 ++A+++ AI + H+GS G ++ SIG+A+ + + V+ AAD A Y AK G Sbjct: 422 QIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTIG 481 Query: 486 RNRVCVAHP 494 RNRV P Sbjct: 482 RNRVAALQP 490 >ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gb|ABI86580.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 492 Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 190/489 (38%), Positives = 283/489 (57%), Gaps = 8/489 (1%) Query: 7 YLALILGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 Y+ + +G++I L +C L++ A + N+ L+ +R I RN E+ L++ Sbjct: 9 YVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLMAERDIERNFELYDLSLQ 68 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVV 125 + + Q P D+ +A+ R LF +A I + +LDA+G + + S Sbjct: 69 AVIHGLQRP-DVMSAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSSNDVPRKG-- 125 Query: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 N+++R YFTVHRD+ D GL++S P + L + +VLS+R+S DGSF GV L+A+++ Sbjct: 126 NFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLCIVLSRRISNPDGSFGGVALIAINLE 185 Query: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 YF LF GL+LG+ G MSL DG+ MR PY+ S +GR+I+ F+R + ++G Sbjct: 186 YFHHLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKATTFRRFQRA---SEGV 242 Query: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVL 305 F A DGV RLY F+ +P PLI+++ E+ ++ W ++ L+ F L Sbjct: 243 FSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIAL 302 Query: 306 LMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGFSTLFI 365 L+ +L +R+ AE +L LARTDGLTGL NRRS E L W+R++R+ +V FS LF+ Sbjct: 303 SFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV-FSLLFV 361 Query: 366 DVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTDEQGAL 425 DVD FK YNDTYGH+ GD L AVA + +++R D A RYGGEEFVVLL T GA Sbjct: 362 DVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGAA 421 Query: 426 RMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYIAKREG 485 ++A+++ AI + H+GS G ++ SIG+A+ + + V+ AAD A Y AK G Sbjct: 422 QIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTIG 481 Query: 486 RNRVCVAHP 494 RNRV P Sbjct: 482 RNRVAALQP 490 >ref|ZP_02892013.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gb|EDT02405.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 492 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 195/494 (39%), Positives = 286/494 (57%), Gaps = 18/494 (3%) Query: 7 YLALILGVIIMMVLT-ICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMD 65 Y +++G++I L +C L++ R A + N+ LI +R I RN E+ L++ Sbjct: 9 YTIVVVGIVIACALMGLCVLQLFQSRNDARERASETSRNLGLIAERDIERNFELYDLSLQ 68 Query: 66 TLAYRYQHPLDLTNASDEERYNYLFGSTAAAHHITALAILDADGYVRVTS-----RRSAS 120 + + P D+ NA R + LF + A + ++ ILDA G + + S RR Sbjct: 69 AVINGLKRP-DVMNAPPGLRRSVLFDNAMTAEFLGSMLILDAGGNIVLDSANDVPRRG-- 125 Query: 121 PSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLM 180 N+++R YFTVHRD+ DAGLFIS P + L + L++R+S DGSF GVVL+ Sbjct: 126 -----NFADRKYFTVHRDNPDAGLFISDPFTSRLRGGALSIGLTRRISNPDGSFGGVVLI 180 Query: 181 ALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLV 240 A+++ YF LF GL+LG+ G +SL DGV MR PY +IGR+I+ F+R + Sbjct: 181 AVNLEYFHHLFAGLSLGQHGSISLIGSDGVMVMRQPYDAHTIGRDISQAATFKRFQTA-- 238 Query: 241 DNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTA 300 +G F + DGV RLY FR +P PL++++ +E+ I+ W ++ L+ F A Sbjct: 239 -REGVFSETSSLDGVRRLYYFRHLPKLPLVIMVAEAEQDIYAAWRHRATTIAALVATFGA 297 Query: 301 LAGVLLMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTVGF 360 + +++ +L +R+ AE +L LARTDGLTGL NRRS E L W+R++R+ +V F Sbjct: 298 AFIAVSVMLGTQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRARSV-F 356 Query: 361 STLFIDVDHFKRYNDTYGHEMGDTVLQAVAAVLRAHLQRQNDLAGRYGGEEFVVLLEQTD 420 S LF+DVD FK YNDTYGH+ GD L AVA + +++R D A RYGGEEFVVLL T Sbjct: 357 SLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDTP 416 Query: 421 EQGALRMAQQLCEAIYSRGIPHSGSPLGVISVSIGVATMNRARHQRMEDVLNAADHAPYI 480 E GA ++A+++ AI + H+GS G ++ SIG+A+ + V+ AAD A Y Sbjct: 417 ETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPEDDEEAGSVIKAADEALYY 476 Query: 481 AKREGRNRVCVAHP 494 AK GRN+V P Sbjct: 477 AKATGRNKVAAFQP 490