BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0057.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777393.1| branched-chain amino acid ABC transporter AT... 491 e-137 ref|ZP_06686376.1| branched-chain amino acid ABC superfamily ATP... 332 2e-89 ref|YP_003977557.1| ABC transporter [Achromobacter xylosoxidans ... 332 4e-89 gb|EGP45125.1| ABC transporter family protein 25 [Achromobacter ... 330 2e-88 gb|EFV82573.1| branched-chain amino acid transport system protei... 329 2e-88 ref|NP_885508.1| putative branched-chain amino acid transport sy... 326 2e-87 ref|YP_001630325.1| putative branched-chain amino acid ABC trans... 325 5e-87 ref|YP_785606.1| branched-chain amino acid ABC transporter ATP-b... 323 1e-86 ref|ZP_07674464.1| branched-chain amino acid ABC transporter, AT... 318 3e-85 ref|YP_981043.1| ABC transporter-like protein [Polaromonas napht... 318 4e-85 >ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ65485.1| ABC-type branched-chain amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 248/251 (98%), Positives = 249/251 (99%) Query: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT Sbjct: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA Sbjct: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH Sbjct: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG Sbjct: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 Query: 241 KKLEAEVVADS 251 KK +AEVVA S Sbjct: 241 KKAQAEVVAAS 251 >ref|ZP_06686376.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, ABC protein [Achromobacter piechaudii ATCC 43553] gb|EFF76722.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, ABC protein [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 169/246 (68%), Positives = 195/246 (79%), Gaps = 4/246 (1%) Query: 5 VLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQGT 60 VL+V+ L A YGKV AL L + GSI TVIG NGAGKST+LNA+MG LP A GT Sbjct: 8 VLEVSNLSARYGKVGALVGASLTVPAGSIVTVIGANGAGKSTMLNAMMGSLPHTGHAAGT 67 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 V+Y G V W +E+RV AG++LVPERRELF TMSVEDNLLLGGFRR R R+A D L Sbjct: 68 VQYAGADVSGWQVERRVAAGMSLVPERRELFGTMSVEDNLLLGGFRRYRAREAGWRDTLN 127 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 VFDLFPRL+ERR QQAGTLSGGERQMLA+GRA+MAKP LLMLDEPSLGLAPRIV+EI H Sbjct: 128 EVFDLFPRLRERRGQQAGTLSGGERQMLAVGRALMAKPNLLMLDEPSLGLAPRIVREIFH 187 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 I++ LR G+++LLVEQNARAALQ ADYGYVLE G+V L G + +LAGDP+VI++YLG G Sbjct: 188 IIARLRETGVAILLVEQNARAALQVADYGYVLETGEVILHGPARELAGDPKVIESYLGLG 247 Query: 241 KKLEAE 246 K E E Sbjct: 248 KGAEKE 253 >ref|YP_003977557.1| ABC transporter [Achromobacter xylosoxidans A8] gb|ADP14842.1| ABC transporter family protein 25 [Achromobacter xylosoxidans A8] Length = 250 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 169/248 (68%), Positives = 196/248 (79%), Gaps = 4/248 (1%) Query: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP---- 56 MS VL+V L A YGKV AL L + GSI TVIG NGAGKST+LNA+MG LP Sbjct: 1 MSAPVLEVTNLSARYGKVGALVGASLTVPAGSIVTVIGANGAGKSTMLNAMMGALPQTGH 60 Query: 57 AQGTVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPL 116 A GTV+Y G V W +E+RV AG++LVPERRELF TMSVEDNLLLGGFRR R R++ Sbjct: 61 AAGTVQYAGTDVSGWQVERRVAAGMSLVPERRELFGTMSVEDNLLLGGFRRYRARESGWR 120 Query: 117 DQLATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVK 176 D L VFDLFPRL+ERR+QQAGTLSGGERQMLA+GRA+MAKP LLMLDEPSLGLAPRIV+ Sbjct: 121 DTLNEVFDLFPRLRERRAQQAGTLSGGERQMLAVGRALMAKPNLLMLDEPSLGLAPRIVR 180 Query: 177 EILHIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAY 236 EI HI++ LR G+++LLVEQNARAALQ ADYGYVLE G+V L G + +LAGDP+VI++Y Sbjct: 181 EIFHIIARLRETGVAILLVEQNARAALQVADYGYVLETGEVILHGPARELAGDPKVIESY 240 Query: 237 LGFGKKLE 244 LG GK E Sbjct: 241 LGLGKGGE 248 >gb|EGP45125.1| ABC transporter family protein 25 [Achromobacter xylosoxidans AXX-A] Length = 254 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 166/247 (67%), Positives = 196/247 (79%), Gaps = 4/247 (1%) Query: 2 SELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----A 57 S+ VL+V L A YGKV AL L + GSI TVIG NGAGKST+LNA+MG LP A Sbjct: 4 SKPVLEVTNLSARYGKVGALAGATLTVPAGSIVTVIGANGAGKSTMLNAMMGALPQTGHA 63 Query: 58 QGTVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLD 117 G+V+Y G V W +E+RV AG++LVPERRELF +MSVEDNLLLGGFRR R R++ D Sbjct: 64 AGSVQYAGTDVSSWPVERRVAAGMSLVPERRELFGSMSVEDNLLLGGFRRYRARESGWRD 123 Query: 118 QLATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKE 177 L VFDLFPRL+ERR+QQAGTLSGGERQMLA+GRA+MAKP LLMLDEPSLGLAPRIV+E Sbjct: 124 TLNEVFDLFPRLRERRAQQAGTLSGGERQMLAVGRALMAKPALLMLDEPSLGLAPRIVRE 183 Query: 178 ILHIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYL 237 I HI++ LR G+++LLVEQNARAALQ ADYGYVLE G+V L G + +LAGDP+VI++YL Sbjct: 184 IFHIIARLRETGVAILLVEQNARAALQVADYGYVLETGEVILHGPARELAGDPKVIESYL 243 Query: 238 GFGKKLE 244 G GK E Sbjct: 244 GLGKGAE 250 >gb|EFV82573.1| branched-chain amino acid transport system protein [Achromobacter xylosoxidans C54] Length = 254 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 166/247 (67%), Positives = 197/247 (79%), Gaps = 4/247 (1%) Query: 2 SELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----A 57 S+ VL+V+ L A YGKV AL L + GSI TVIG NGAGKST+LNA+MG LP A Sbjct: 4 SKPVLEVSNLSARYGKVGALAGATLTVPAGSIVTVIGANGAGKSTMLNAMMGSLPQTGHA 63 Query: 58 QGTVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLD 117 G+V+Y G V W +E+RV AG++LVPERRELF +MSVEDNLLLGGFRR R R++ D Sbjct: 64 AGSVQYAGTDVSSWPVERRVAAGMSLVPERRELFGSMSVEDNLLLGGFRRYRARESGWRD 123 Query: 118 QLATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKE 177 L VFDLFPRL+ERR+QQAGTLSGGERQMLA+GRA+MAKP LLMLDEPSLGLAPRIV+E Sbjct: 124 TLNEVFDLFPRLRERRAQQAGTLSGGERQMLAVGRALMAKPALLMLDEPSLGLAPRIVRE 183 Query: 178 ILHIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYL 237 I HI++ LR G+++LLVEQNARAALQ ADYGYVLE G+V L G + +LAGDP+VI++YL Sbjct: 184 IFHIIARLRETGVAILLVEQNARAALQVADYGYVLETGEVILHGPARELAGDPKVIESYL 243 Query: 238 GFGKKLE 244 G GK E Sbjct: 244 GLGKGAE 250 >ref|NP_885508.1| putative branched-chain amino acid transport system protein [Bordetella parapertussis 12822] ref|NP_890328.1| branched-chain amino acid transport system protein [Bordetella bronchiseptica RB50] emb|CAE38627.1| putative branched-chain amino acid transport system protein [Bordetella parapertussis] emb|CAE35767.1| putative branched-chain amino acid transport system protein [Bordetella bronchiseptica RB50] Length = 250 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 163/241 (67%), Positives = 195/241 (80%), Gaps = 4/241 (1%) Query: 5 VLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQGT 60 +L+V QL A YGKV AL L++ GSI TVIG NGAGKST+LNA+MG LP A G Sbjct: 6 ILEVRQLSARYGKVGALSGADLQVPAGSIVTVIGANGAGKSTMLNAVMGALPQTGHAAGQ 65 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 V+Y G V W +E+RV AG++LVPERRELF +MSVEDNLLLGGFRR R R++ D L Sbjct: 66 VQYAGADVSGWQVERRVAAGMSLVPERRELFGSMSVEDNLLLGGFRRYRARESGWRDTLQ 125 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 VFDLFPRL+ERRSQQAGTLSGGERQMLA+GRA+MAKP+LLMLDEPSLGLAPRIV+EI H Sbjct: 126 EVFDLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPRIVREIFH 185 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 I++ LR G+++LLVEQNARAALQ ADYGYVLE G++ L G + +LAG+P+VI++YLG G Sbjct: 186 IIARLRETGVAILLVEQNARAALQVADYGYVLETGEIVLHGPARELAGNPRVIESYLGLG 245 Query: 241 K 241 K Sbjct: 246 K 246 >ref|YP_001630325.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Bordetella petrii DSM 12804] emb|CAP42056.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Bordetella petrii] Length = 248 Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 164/241 (68%), Positives = 192/241 (79%), Gaps = 4/241 (1%) Query: 5 VLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQGT 60 +LDV L A YGKV AL + L + GSI TVIG NGAGKST+LNA+MG LP A G Sbjct: 6 ILDVHGLSARYGKVGALSEATLAVAPGSIVTVIGANGAGKSTMLNAMMGALPSSGHASGA 65 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 VRY G V WS+E+RV AG++LVPERRELF +MSVEDNLLLGGFRR R R++ L Sbjct: 66 VRYAGTDVSGWSVERRVAAGMSLVPERRELFGSMSVEDNLLLGGFRRYRARESGWRGTLD 125 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 VFDLFPRL+ERR QQAGTLSGGERQMLA+GRA+MAKP+LLMLDEPSLGLAPRIV+EI H Sbjct: 126 EVFDLFPRLRERRRQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPRIVREIFH 185 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 I++ LR G+++LLVEQNARAALQ ADYGYVLE G+V L G + LAG+P+VI++YLG G Sbjct: 186 IIARLRETGVAILLVEQNARAALQVADYGYVLETGEVVLHGPARDLAGNPRVIESYLGLG 245 Query: 241 K 241 K Sbjct: 246 K 246 >ref|YP_785606.1| branched-chain amino acid ABC transporter ATP-binding protein [Bordetella avium 197N] emb|CAJ48692.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Bordetella avium 197N] Length = 246 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 162/242 (66%), Positives = 196/242 (80%), Gaps = 4/242 (1%) Query: 5 VLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQGT 60 VL+V L A YGKV AL + L+++ GSI TVIG NGAGKST+LNAIMG LP A G+ Sbjct: 4 VLEVRGLSARYGKVGALSEAALQVQAGSIVTVIGANGAGKSTMLNAIMGSLPQTGHAVGS 63 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 V+Y G+ V W +E+RV AG++LVPERRELF +MSVEDNLLLGGFRR R R+A D L Sbjct: 64 VQYAGKDVSAWQVERRVGAGMSLVPERRELFGSMSVEDNLLLGGFRRYRAREAGWRDTLQ 123 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 VF+LFPRL+ERR QQAGTLSGGERQMLA+GRA+M KP LLMLDEPSLGLAPRIV+EI H Sbjct: 124 EVFELFPRLRERRGQQAGTLSGGERQMLAVGRALMGKPSLLMLDEPSLGLAPRIVREIFH 183 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 I++ LR G+++LLVEQNARAALQ ADYGYVLE G++ L G + +LAG+P+VI++YLG G Sbjct: 184 IIARLRETGVAILLVEQNARAALQVADYGYVLETGEIILHGPARELAGNPRVIESYLGLG 243 Query: 241 KK 242 K+ Sbjct: 244 KQ 245 >ref|ZP_07674464.1| branched-chain amino acid ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP67144.1| branched-chain amino acid ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] Length = 247 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 192/243 (79%), Gaps = 4/243 (1%) Query: 4 LVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQG 59 ++L+V L YGKV+ALH +LK+E G I TVIGPNGAGKST+L A+MG LP A G Sbjct: 3 VILEVKDLHVRYGKVEALHGANLKVESGQIVTVIGPNGAGKSTMLGAVMGALPTTGSASG 62 Query: 60 TVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQL 119 V Y G ++ +E+RV G+ LVPE+RELF+TMSVEDNL+LG +RR R + LDQ+ Sbjct: 63 VVSYLGHNLTGLPVEKRVARGMCLVPEKRELFATMSVEDNLVLGAYRRKRAGERNYLDQM 122 Query: 120 ATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEIL 179 V+DLFPRLKERR+Q+AGTLSGGERQMLA+GRA+MAKPQLLMLDEPSLGLAP IVKEI Sbjct: 123 EVVYDLFPRLKERRAQEAGTLSGGERQMLAVGRALMAKPQLLMLDEPSLGLAPLIVKEIF 182 Query: 180 HIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGF 239 HI+S+LR G++ LL+EQNARAALQ ADYGYVLE G +TL+G + +LA +P+VI+ YLG Sbjct: 183 HIISDLRKTGVATLLIEQNARAALQVADYGYVLETGDMTLEGAAQELAVNPRVIETYLGL 242 Query: 240 GKK 242 KK Sbjct: 243 AKK 245 >ref|YP_981043.1| ABC transporter-like protein [Polaromonas naphthalenivorans CJ2] gb|ABM36122.1| amino acid/amide ABC transporter ATP-binding protein 2, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 252 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 152/247 (61%), Positives = 198/247 (80%) Query: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 M+ L + LRA YG+ + LH + L+ +GS+ TVIGPNGAGKSTLLN +MG+LP +G Sbjct: 1 MTNPHLRIHDLRAGYGRAEVLHGLDLQAAKGSVITVIGPNGAGKSTLLNTLMGILPGRGA 60 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 + ++G+S+ +LE RVM GIALVPE+RELF TM VEDNL+LGGFR++RL AQ D+LA Sbjct: 61 IEFEGQSIAALTLEDRVMLGIALVPEKRELFGTMPVEDNLVLGGFRQMRLGNAQWRDRLA 120 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 V+DLFPRLKERR Q AGTLSGGERQMLA+GR++M++P LLMLDEPSLGLAP +V+EI Sbjct: 121 DVYDLFPRLKERRMQLAGTLSGGERQMLAVGRSLMSRPSLLMLDEPSLGLAPLVVREIFS 180 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 I++ELR G++++LVEQNARAAL ADYGYVLE+G+++L G +A+LA DP+VI YLG Sbjct: 181 IITELRKTGVTIVLVEQNARAALAVADYGYVLEMGELSLHGPAAELAEDPRVIDTYLGAA 240 Query: 241 KKLEAEV 247 +K E ++ Sbjct: 241 RKKEEDI 247