BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0054.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777391.1| branched-chain amino acid ABC transporter pe... 333 3e-89 ref|YP_003777392.1| branched-chain amino acid ABC transporter pe... 298 1e-78 ref|YP_521556.1| inner-membrane translocator [Rhodoferax ferrire... 229 7e-58 ref|YP_981041.1| inner-membrane translocator [Polaromonas naphth... 224 2e-56 ref|YP_001790026.1| inner-membrane translocator [Leptothrix chol... 204 3e-50 ref|YP_287294.1| inner-membrane translocator:ABC transporter rel... 203 4e-50 ref|YP_785605.1| branched-chain amino acid ABC transporter ATP-b... 202 1e-49 ref|NP_882083.1| putative branched-chain amino acid transport sy... 201 2e-49 ref|NP_885509.1| putative branched-chain amino acid transport sy... 200 3e-49 ref|ZP_06686375.1| ABC superfamily ATP binding cassette transpor... 198 1e-48 >ref|YP_003777391.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65483.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 197/198 (99%), Positives = 197/198 (99%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR Sbjct: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 Query: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRALAGTLGVPLVIAALVWWAAPQQFALP 120 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRAL GTLGVPLVIAALVWWAAPQQFALP Sbjct: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRALLGTLGVPLVIAALVWWAAPQQFALP 120 Query: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP Sbjct: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 Query: 181 AFWDERWNLASLTLSAQT 198 AFWDERWNLASLTLSAQT Sbjct: 181 AFWDERWNLASLTLSAQT 198 >ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65484.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/150 (100%), Positives = 150/150 (100%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS Sbjct: 119 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 178 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA Sbjct: 179 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 238 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL Sbjct: 239 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL 268 >ref|YP_521556.1| inner-membrane translocator [Rhodoferax ferrireducens T118] gb|ABD68025.1| inner-membrane translocator [Rhodoferax ferrireducens T118] Length = 345 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 120/203 (59%), Positives = 152/203 (74%), Gaps = 1/203 (0%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIA+IL LDG+TNG VY L+ +A VLVF+VTR++FIPQGEFVAYGALTLA+ Q G+ Sbjct: 1 MDFSIASILLLDGITNGAVYALLGLATVLVFSVTRVIFIPQGEFVAYGALTLAIFQTGKV 60 Query: 61 PGPLWLLLVLALCAAGMQAA-SLLRAGQAALLPRALAGTLGVPLVIAALVWWAAPQQFAL 119 PG +WLLL++A+ AA M A S G A +A L PLV++ L WAAP Q L Sbjct: 61 PGTVWLLLIMAVLAALMDARLSWQHTGDAKRALKAGLSALAAPLVVSLLSIWAAPHQLPL 120 Query: 120 PVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRT 179 VQ LLT+ ++TA GPL+Y++ Y+S+ADAS L LLIVSVG+H AMTGLGL+FFGAEGFR Sbjct: 121 LVQALLTVAIVTAFGPLVYRLAYQSLADASSLVLLIVSVGVHFAMTGLGLLFFGAEGFRN 180 Query: 180 PAFWDERWNLASLTLSAQTVVVV 202 P+FWDER NL L ++ Q +++V Sbjct: 181 PSFWDERLNLGPLAITGQAIIIV 203 >ref|YP_981041.1| inner-membrane translocator [Polaromonas naphthalenivorans CJ2] gb|ABM36120.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 346 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 157/356 (44%), Positives = 203/356 (57%), Gaps = 56/356 (15%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIA+IL LDG+TNG +Y L+ +A VLVFTVTR++FIPQGEFVAYGALTLA+LQ G+ Sbjct: 1 MDFSIASILLLDGVTNGAIYALLGLATVLVFTVTRVIFIPQGEFVAYGALTLAILQTGKI 60 Query: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAAL--LPRALAGTLGVPLVIAALVWWAAPQQFA 118 PG +WLLL+LA AA M R AL L AL TL +P+V+A L WAAP Q Sbjct: 61 PGTVWLLLILAAIAAAMDGVGAWRRHHNALATLKSALK-TLVIPVVVAGLTAWAAPLQMP 119 Query: 119 LPVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFR 178 L +Q LL++ ++TA GPL+Y+V Y+S+ADAS L LLIVSVG+H AMTGLGL+FFGAEGFR Sbjct: 120 LLLQALLSVCIVTAFGPLVYRVAYQSLADASPLVLLIVSVGVHFAMTGLGLLFFGAEGFR 179 Query: 179 TPAFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYFLFGKVDFLGKYDGISGIPALQL 238 P+FWD R +L +LTLS Q ++++ + + L+F Sbjct: 180 NPSFWDLRMSLGALTLSGQAIIIMLTSVALIVLLWLFF---------------------- 217 Query: 239 AGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAEAMGVDTGRYKI 298 ER LY G+A+RA R A MG+ + Sbjct: 218 -------ERSLY----------------------GKALRATAVNRLGARLMGISSQSAGQ 248 Query: 299 LIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHIWGALLGA 354 L F AAL+ ++SG L S F +G++ V G+A GALLGA Sbjct: 249 LTFAMAALIGALSGLLIGPTTTIFYDSGF--LIGLKGFVAAVAAGLASYPGALLGA 302 >ref|YP_001790026.1| inner-membrane translocator [Leptothrix cholodnii SP-6] gb|ACB33261.1| inner-membrane translocator [Leptothrix cholodnii SP-6] Length = 345 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 155/362 (42%), Positives = 203/362 (56%), Gaps = 57/362 (15%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIA+IL LDG TNG +Y L+A+A VL+F VTR++FIPQGEFVA+GALTLAMLQ GQ Sbjct: 1 MDFSIASILALDGFTNGAIYALLAMATVLLFAVTRVIFIPQGEFVAFGALTLAMLQMGQV 60 Query: 61 PGPLWLLLVLA-LCAAGMQAASLLRAGQAALLPRALAGTLGVPLVIAALVWWAAPQQFAL 119 PG +WLLL++A L AA L R AA L A+ TL P+ I+ L WAAPQQ L Sbjct: 61 PGTVWLLLIMAGLAAATELFHGLRRRLPAAKLAGAVLATLAYPVAISLLAGWAAPQQLPL 120 Query: 120 PVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRT 179 +Q LLTL ++T +G L+Y++ YES+ADA+VL LLIVSVG+H A+TGLGL+FFGAEGFR Sbjct: 121 LLQALLTLAIVTPMGSLLYRLAYESLADATVLVLLIVSVGVHFALTGLGLLFFGAEGFRN 180 Query: 180 PAFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYFLFGKVDFLGKYDGISGIPALQLA 239 P+FWDER+ L LS QT+++ A+ + L+F Sbjct: 181 PSFWDERFAAGPLMLSGQTLIIFLASGALIVMLWLFF----------------------- 217 Query: 240 GLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAEAMGVDTGRYKIL 299 ER LY G+A+RA R A MG+ T L Sbjct: 218 ------ERSLY----------------------GKALRATAVNRLGARLMGIKTTGAGRL 249 Query: 300 IFVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHIWGALLGA---GV 356 F AA + ++SG L S F +G++ V G++ A++GA GV Sbjct: 250 SFTMAAFIGALSGLLIGPTTTIFYDSGF--LIGLKGFVAAVFAGLSSYPLAMVGALGVGV 307 Query: 357 LK 358 L+ Sbjct: 308 LE 309 >ref|YP_287294.1| inner-membrane translocator:ABC transporter related [Dechloromonas aromatica RCB] gb|AAZ48824.1| amino acid/amide ABC transporter ATP-binding protein 1, HAAT family / amino acid/amide ABC transporter membrane protein 1, HAAT family / amino acid/amide ABC transporter membrane protein 2, HAAT family [Dechloromonas aromatica RCB] Length = 950 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 100/150 (66%), Positives = 120/150 (80%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 GISLYFLFG V+FLG + GI+GIPA+ L G +L R +YLIW +VL A NLLDS Sbjct: 480 GISLYFLFGNVEFLGGHTGITGIPAVSLFGWELKSGREFFYLIWLVVLLAIVSIRNLLDS 539 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GRAIRALKGG MAEAMGV+T R KI+IF+ AALLAS+SGWL+AH+QR VNP+PF+L Sbjct: 540 RVGRAIRALKGGTVMAEAMGVNTAREKIIIFLIAALLASISGWLYAHLQRFVNPTPFALN 599 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 GIEYLF+ VVGGI H+WGA+LGAGV+ +L Sbjct: 600 QGIEYLFMAVVGGIGHVWGAVLGAGVITIL 629 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 145/360 (40%), Positives = 198/360 (55%), Gaps = 53/360 (14%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD I +L DG+TNG +Y L+A+ALVLVF VTR++FIPQGEFVA+GALTLA LQ G+ Sbjct: 1 MDLQILLLLGQDGITNGAIYALLALALVLVFAVTRVIFIPQGEFVAFGALTLASLQAGKV 60 Query: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRALAGTLGVPLVIAALVWWAAPQQFALP 120 PG +WLLL L A + LLR G+ A LP L +G+PL+ AA ++ P Q L Sbjct: 61 PGTVWLLLGLGTTVAILDGYRLLREGRYAKLPPLLIVNVGIPLLFAAGLFAMPPTQLPLW 120 Query: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 QV++ +LL+ LGP++Y++ ++ +A A VL LLIV+V +HLA+ GLGL+FFGAEG+RTP Sbjct: 121 TQVVIAMLLVVPLGPMIYRIAFQPLASAPVLVLLIVAVAVHLALIGLGLLFFGAEGWRTP 180 Query: 181 AFWDERWNLASLTLSAQTVVVVAAAAIFTRGISLYFLFGKVDFLGKYDGISGIPALQLAG 240 AF D + LA L QTV+VV A+A+ I LYF F Sbjct: 181 AFTDLSFELAGAPLQGQTVLVVVASALLI--IGLYFFF---------------------- 216 Query: 241 LDLAKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAEAMGVDTGRYKILI 300 ER +Y G+A+RA R+ A MG+ L Sbjct: 217 -----ERTIY----------------------GKALRATAMNRTGARLMGIPPVLAGKLC 249 Query: 301 FVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 F AA + + SG L A + S F +G++ ++GG+A A LGA ++ LL Sbjct: 250 FTLAAAIGAFSGILIAPITTIYYDSGF--LIGLKGFVGAIIGGLASYPLAALGAILVGLL 307 >ref|YP_785605.1| branched-chain amino acid ABC transporter ATP-binding/permease [Bordetella avium 197N] emb|CAJ48691.1| high-affinity branched-chain amino acid transport ATP-binding protein LivG [Bordetella avium 197N] Length = 612 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 97/147 (65%), Positives = 118/147 (80%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 G+SL++LFG +DFLGK+DGI+GI L + G+ LA RH+YYLIW VL A W + NLL S Sbjct: 117 GLSLFYLFGNLDFLGKHDGIAGIEPLSIFGVSLADGRHIYYLIWVWVLLALWATRNLLSS 176 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GRAIRALK G MAE+MGV+T RYK +IFV+AALLA VSGWL+AHMQR V+PSPF L Sbjct: 177 RPGRAIRALKSGAGMAESMGVNTARYKTIIFVWAALLACVSGWLYAHMQRAVSPSPFGLN 236 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVL 357 GIEYLF+ V+GG AH+WGALLG+ V+ Sbjct: 237 YGIEYLFMAVIGGAAHVWGALLGSAVI 263 >ref|NP_882083.1| putative branched-chain amino acid transport system protein [Bordetella pertussis Tohama I] emb|CAE43829.1| putative branched-chain amino acid transport system protein [Bordetella pertussis Tohama I] gb|AEE68697.1| putative branched-chain amino acid transport system protein [Bordetella pertussis CS] Length = 598 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/147 (66%), Positives = 118/147 (80%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 G+SLY+LFG +D+LGK+DGI+GI + L G LA RH+YYLIW VL A W + NLLDS Sbjct: 117 GLSLYYLFGNLDWLGKHDGIAGIEPISLFGWSLASGRHIYYLIWVFVLLALWATRNLLDS 176 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GRAIRALK G MAE+MGV+TG YKI+IFV+AALLA +SGWL+AHMQR V+PSPF L Sbjct: 177 RPGRAIRALKSGAGMAESMGVNTGIYKIVIFVWAALLACLSGWLYAHMQRAVSPSPFGLN 236 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVL 357 GIEYLF+ VVGG H+WGALLG+ V+ Sbjct: 237 YGIEYLFMAVVGGAGHVWGALLGSAVI 263 >ref|NP_885509.1| putative branched-chain amino acid transport system protein [Bordetella parapertussis 12822] ref|NP_890329.1| branched-chain amino acid transport system protein [Bordetella bronchiseptica RB50] emb|CAE38628.1| putative branched-chain amino acid transport system protein [Bordetella parapertussis] emb|CAE35768.1| putative branched-chain amino acid transport system protein [Bordetella bronchiseptica RB50] Length = 612 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/147 (66%), Positives = 118/147 (80%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 G+SLY+LFG +D+LGK+DGI+GI + L G LA RH+YYLIW VL A W + NLLDS Sbjct: 117 GLSLYYLFGNLDWLGKHDGIAGIEPISLFGWSLASGRHIYYLIWVFVLLALWATRNLLDS 176 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GRAIRALK G MAE+MGV+TG YKI+IFV+AALLA +SGWL+AHMQR V+PSPF L Sbjct: 177 RPGRAIRALKSGAGMAESMGVNTGIYKIVIFVWAALLACLSGWLYAHMQRAVSPSPFGLN 236 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVL 357 GIEYLF+ VVGG H+WGALLG+ V+ Sbjct: 237 YGIEYLFMAVVGGAGHVWGALLGSAVI 263 >ref|ZP_06686375.1| ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] gb|EFF76721.1| ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] Length = 612 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/150 (64%), Positives = 121/150 (80%) Query: 211 GISLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDS 270 G+SLYFLFG +D+LGK+DGI+GI L L G+ LA R++YYLIW VL A W + NLL+S Sbjct: 117 GLSLYFLFGNIDWLGKHDGIAGIEPLSLFGISLASGRNIYYLIWVFVLLALWATRNLLNS 176 Query: 271 RAGRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLA 330 R GRAIRALK G MAE+MGV+T YK++IFV+AALLA +SGWL+AHMQR V+PSPF + Sbjct: 177 RPGRAIRALKSGAGMAESMGVNTAAYKVVIFVWAALLACISGWLYAHMQRAVSPSPFGVN 236 Query: 331 MGIEYLFIVVVGGIAHIWGALLGAGVLKLL 360 GIEYLF+ VVGG ++WGALLG+GV+ +L Sbjct: 237 YGIEYLFMAVVGGAGYVWGALLGSGVILVL 266