BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0029.p         (170 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777366.1| protocatechuate 3,4-dioxygenase subunit alph...   348   2e-94
ref|YP_004752731.1| protocatechuate 3,4-dioxygenase subunit alph...   211   4e-53
ref|YP_347003.1| protocatechuate 3,4-dioxygenase subunit alpha [...   118   3e-25
ref|YP_258450.1| protocatechuate 3,4-dioxygenase subunit alpha [...   113   8e-24
ref|YP_002871016.1| protocatechuate 3,4-dioxygenase alpha chain ...   113   9e-24
ref|ZP_08181764.1| protocatechuate 3,4-dioxygenase, alpha subuni...   111   4e-23
ref|ZP_07774004.1| protocatechuate 3,4-dioxygenase, alpha subuni...   111   4e-23
ref|ZP_08179079.1| protocatechuate 3,4-dioxygenase, alpha subuni...   110   5e-23
gb|AEL09004.1| protocatechuate 3,4-dioxygenase, alpha subunit [X...   110   5e-23
ref|NP_635763.1| protocatechuate 3,4-dioxygenase alpha chain [Xa...   110   7e-23

>ref|YP_003777366.1| protocatechuate 3,4-dioxygenase subunit alpha [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65458.1| protocatechuate 3,4-dioxygenase alpha chain protein [Herbaspirillum
           seropedicae SmR1]
          Length = 170

 Score =  348 bits (892), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MSNITTSQTIGPFPHEAWAWAVELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPG 60
           MSNITTSQTIGPFPHEAWAWAVELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPG
Sbjct: 1   MSNITTSQTIGPFPHEAWAWAVELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPG 60

Query: 61  SAPVESAHAIPGYRRVPTNEEGGFAFSISQPQAPAGKPVAYVTVFARGLVKHQFTAVFLE 120
           SAPVESAHAIPGYRRVPTNEEGGFAFSISQPQAPAGKPVAYVTVFARGLVKHQFTAVFLE
Sbjct: 61  SAPVESAHAIPGYRRVPTNEEGGFAFSISQPQAPAGKPVAYVTVFARGLVKHQFTAVFLE 120

Query: 121 DDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGARETVFFDYI 170
           DDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGARETVFFDYI
Sbjct: 121 DDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGARETVFFDYI 170


>ref|YP_004752731.1| protocatechuate 3,4-dioxygenase subunit alpha [Collimonas
           fungivorans Ter331]
 gb|AEK61908.1| Protocatechuate 3,4-dioxygenase alpha chain [Collimonas fungivorans
           Ter331]
          Length = 172

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 131/170 (77%), Gaps = 1/170 (0%)

Query: 2   SNITTSQTIGPFPHEAWAWAVELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPGS 61
           SNITTSQT+GPFPHEAWAWAV  ++ + ++AP + I+G + DGDG PIND W EAW+P +
Sbjct: 3   SNITTSQTVGPFPHEAWAWAVSASATLHTTAPTITISGVLRDGDGAPINDGWVEAWMPDA 62

Query: 62  APVESAHAIPGYRRVPTNEEGGFAFSISQPQ-APAGKPVAYVTVFARGLVKHQFTAVFLE 120
           A  E+A  +PG+RR+ TN++G F   +S P  A  GKPV + TVFARGLVKHQF+AVFLE
Sbjct: 63  AAAETAQQLPGFRRIATNDDGAFRIEVSLPSPARFGKPVLFATVFARGLVKHQFSAVFLE 122

Query: 121 DDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGARETVFFDYI 170
           DD  LAQS +L QVPADRR TLIARKQ D  Y W+I MQG +ETVFFDY+
Sbjct: 123 DDSGLAQSEILSQVPADRRPTLIARKQGDARYHWDIWMQGDKETVFFDYV 172


>ref|YP_347003.1| protocatechuate 3,4-dioxygenase subunit alpha [Pseudomonas
           fluorescens Pf0-1]
 gb|ABA73014.1| protocatechuate 3,4-dioxygenase alpha chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 188

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 97/188 (51%), Gaps = 28/188 (14%)

Query: 5   TTSQTIGPFPHEAWAW------AVELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWL 58
           TTS T+GP+ H    W      A ELT        +V I G ++DG+G  +NDA  E W 
Sbjct: 6   TTSHTVGPYYHIGLTWLNRENLANELTL-----GQRVAITGQVVDGNGDVVNDAMLEVWQ 60

Query: 59  PGSAPV----ESAHAIP------GYRRVPTNEEGGFAFSISQPQAPAG------KPVAYV 102
             +A      E   A P      G+ RVP + +G F F+  +P    G       P   V
Sbjct: 61  ANAAGKYDHPEDEQAKPLDPNFEGFGRVPVDADGRFRFTTIKPGTVEGLKGTTQAPHLVV 120

Query: 103 TVFARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGAR 162
            VFARGLVKH  T ++ E DPA     LLE VPA+RRDTL+A+    G Y WN+ +QG  
Sbjct: 121 LVFARGLVKHLLTRIYFEGDPANVNDPLLECVPAERRDTLLAKPDAAGVYQWNVILQGTD 180

Query: 163 -ETVFFDY 169
            ETVFFDY
Sbjct: 181 AETVFFDY 188


>ref|YP_258450.1| protocatechuate 3,4-dioxygenase subunit alpha [Pseudomonas
           fluorescens Pf-5]
 gb|AAY90606.1| protocatechuate 3,4-dioxygenase, alpha subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 188

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 18/183 (9%)

Query: 5   TTSQTIGPFPHEAWAWA-VELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPGSAP 63
           TTS T+GP+ H    W   E  +   +   +V I G ++DG+G  +NDA  E W   +A 
Sbjct: 6   TTSHTVGPYYHIGLTWLNREDLTEEGTLGERVAITGQVVDGNGNFVNDAMLEVWQANAAG 65

Query: 64  V----ESAHAIP------GYRRVPTNEEGGFAFSISQPQAPAG------KPVAYVTVFAR 107
                E     P      G+ RVP + EG F F+  +P    G       P   V VFAR
Sbjct: 66  KYRHPEDDQDKPLDPNFQGFGRVPVDAEGRFRFTTIKPGTVPGLKGTTQAPHLVVLVFAR 125

Query: 108 GLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGAR-ETVF 166
           GLVKH  T ++ E +PA A   LL  VP +RR TL+A+   DG Y WN+ +QG   ETVF
Sbjct: 126 GLVKHLLTRIYFEGEPANASDPLLACVPEERRGTLLAKADADGHYQWNVILQGTDAETVF 185

Query: 167 FDY 169
           FDY
Sbjct: 186 FDY 188


>ref|YP_002871016.1| protocatechuate 3,4-dioxygenase alpha chain [Pseudomonas
           fluorescens SBW25]
 emb|CAY47621.1| protocatechuate 3,4-dioxygenase alpha chain [Pseudomonas
           fluorescens SBW25]
          Length = 188

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 96/185 (51%), Gaps = 18/185 (9%)

Query: 3   NITTSQTIGPFPHEAWAWAVELTSRVDSS-APQVKINGAILDGDGVPINDAWAEAWLPGS 61
           N TTS T+GP+ H    W       V ++   +V I+G ++DG+G  +NDA  E W   +
Sbjct: 4   NATTSHTVGPYYHIGLTWLNREDLTVAATLGERVAISGQVVDGNGDVVNDAMLEVWQANA 63

Query: 62  A-----PVESAHA-----IPGYRRVPTNEEGGFAFSISQPQAPAG------KPVAYVTVF 105
           A     P +           G+ RVP + EG F F+  +P A  G       P   V VF
Sbjct: 64  AGKYDHPEDDQDKALDPNFEGFGRVPVDAEGRFRFTTIKPGAVPGLKGTTQAPHLVVLVF 123

Query: 106 ARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGA-RET 164
           ARGLVKH  T ++ E +       LL  VPA+RR TLIA+   DG + WN+ +QG  +ET
Sbjct: 124 ARGLVKHLLTRIYFEGEALNGDDPLLACVPAERRGTLIAKTDADGVHQWNVILQGTDKET 183

Query: 165 VFFDY 169
           VFFDY
Sbjct: 184 VFFDY 188


>ref|ZP_08181764.1| protocatechuate 3,4-dioxygenase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gb|EGD20612.1| protocatechuate 3,4-dioxygenase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 187

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 29/190 (15%)

Query: 3   NITTSQTIGPFPHEAWAWAVELTSRVDSSAP------QVKINGAILDGDGVPINDAWAEA 56
           + T SQT+GP+    +   +E   R D  AP      QV+I+G + DG G P+ DA  E 
Sbjct: 4   HTTPSQTVGPY----YRLGLEPLYR-DQLAPAQATGTQVQISGCVFDGAGTPVADAVLEL 58

Query: 57  WLPGSAPVESAHA-----------IPGYRRVPTNEEGGFAFSISQP---QAPAGKPVA-- 100
           W   +A +  AHA             G+ RVPT+ +G F+FS  +P     P GK  A  
Sbjct: 59  WQADAAGI-YAHAADTRFETHDPGFDGWGRVPTDAQGCFSFSTIKPGQVAGPDGKLQAAH 117

Query: 101 -YVTVFARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQ 159
             V VF RGL++   T ++  DDP L    +L  VPA+RR TL+A+ +  G+Y+W+IHMQ
Sbjct: 118 LTVLVFMRGLLRGVSTRLYFADDPQLRSDPILALVPAERRATLLAQSRGSGNYVWDIHMQ 177

Query: 160 GARETVFFDY 169
           G  ETVFF Y
Sbjct: 178 GDAETVFFHY 187


>ref|ZP_07774004.1| protocatechuate 3,4-dioxygenase, alpha subunit [Pseudomonas
           fluorescens WH6]
 gb|EFQ64768.1| protocatechuate 3,4-dioxygenase, alpha subunit [Pseudomonas
           fluorescens WH6]
          Length = 188

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 97/184 (52%), Gaps = 20/184 (10%)

Query: 5   TTSQTIGPFPHEAWAWA--VELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPGSA 62
           TTS T+GP+ H    W    +LTS   +   +V I+G ++DG+G  +NDA  E W   +A
Sbjct: 6   TTSHTVGPYYHIGLTWLNREDLTSAA-TLGERVAISGQVVDGNGDAVNDAMLEVWQANAA 64

Query: 63  PV------ESAHAI----PGYRRVPTNEEGGFAFSISQPQAPAG------KPVAYVTVFA 106
                   E   A+     G+ RVP + EG F F+  +P +  G       P   V VFA
Sbjct: 65  GKYDHPEDEQDKAVDPNFEGFGRVPVDAEGRFRFTTIKPGSVPGLKGTTQAPHLVVLVFA 124

Query: 107 RGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGA-RETV 165
           RGLVKH  T ++ + +       LL  VPA RR TLIA+   DG Y WN+ +QG  +ETV
Sbjct: 125 RGLVKHLLTRIYFDGEALNGDDPLLACVPAQRRGTLIAKPGDDGVYQWNVILQGTDKETV 184

Query: 166 FFDY 169
           FFDY
Sbjct: 185 FFDY 188


>ref|ZP_08179079.1| protocatechuate 3,4-dioxygenase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gb|EGD08724.1| protocatechuate 3,4-dioxygenase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 187

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 98/189 (51%), Gaps = 27/189 (14%)

Query: 3   NITTSQTIGPFPHEAWAWAVELTSRVDSSAP------QVKINGAILDGDGVPINDAWAEA 56
           + T SQT+GP+    +   +E   R D  AP      QV I+G + DG G P+ DA  E 
Sbjct: 4   HATPSQTVGPY----YRLGLEPLYR-DKIAPAHATGTQVHISGCVFDGAGTPVADAVLEL 58

Query: 57  WLPGSAPV----------ESAHAIPGYRRVPTNEEGGFAFSISQPQA---PAGKPVA--- 100
           W   +A +              +  G+ RVPT+ +G F FS  +P A   P GK  A   
Sbjct: 59  WQADAAGIYAHAADARSAAHDASFDGWGRVPTDAQGRFRFSTVKPGAVAGPEGKAQAAHL 118

Query: 101 YVTVFARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQG 160
            V VF RGL++   T ++  DDP L    +L  VPA RRDTL+A+   +G Y W+IHMQG
Sbjct: 119 TVLVFMRGLLRCASTRLYFADDPQLGSDPILALVPAARRDTLLAQPTGNGVYAWDIHMQG 178

Query: 161 ARETVFFDY 169
             ETVFF Y
Sbjct: 179 EMETVFFRY 187


>gb|AEL09004.1| protocatechuate 3,4-dioxygenase, alpha subunit [Xanthomonas
           campestris pv. raphani 756C]
          Length = 187

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 25/188 (13%)

Query: 3   NITTSQTIGPFPHEAWAWAVELTSRVD-----SSAPQVKINGAILDGDGVPINDAWAEAW 57
           + T SQT+GP+    +   +E   R       ++  QV+I+G + DG G+P++DA  E W
Sbjct: 4   HATPSQTVGPY----YRLGLEPLYRAQIAPEHAAGTQVQISGCVFDGAGMPVSDAVLELW 59

Query: 58  LPGSA--------PVESAH--AIPGYRRVPTNEEGGFAFSISQPQ---APAGKPVA---Y 101
              +A        P  +AH  +  G+ RVPT+ +G +  +  +P     P G+P A    
Sbjct: 60  QADAAGIYAHAHDPRCAAHDPSFDGWGRVPTDAQGRYRLTTIRPGPVVGPNGQPQAAHLV 119

Query: 102 VTVFARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGA 161
           V VF RGL++   T ++  DDP L+   +L  VP++RR TL+AR +  G Y+W+IHMQG 
Sbjct: 120 VLVFMRGLLRGVATRLYFADDPQLSDDPILALVPSERRGTLLARARSAGDYVWDIHMQGD 179

Query: 162 RETVFFDY 169
            ETVFF Y
Sbjct: 180 AETVFFSY 187


>ref|NP_635763.1| protocatechuate 3,4-dioxygenase alpha chain [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 ref|YP_241485.1| protocatechuate 3,4-dioxygenase alpha chain [Xanthomonas campestris
           pv. campestris str. 8004]
 ref|YP_001901800.1| protocatechuate 3,4-dioxygenase alpha chain [Xanthomonas campestris
           pv. campestris str. B100]
 gb|AAM39687.1| protocatechuate 3,4-dioxygenase alpha chain [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gb|AAY47465.1| protocatechuate 3,4-dioxygenase alpha chain [Xanthomonas campestris
           pv. campestris str. 8004]
 emb|CAP49725.1| protocatechuate 3,4-dioxygenase alpha chain [Xanthomonas campestris
           pv. campestris]
          Length = 187

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 25/188 (13%)

Query: 3   NITTSQTIGPFPHEAWAWAVELTSRVD-----SSAPQVKINGAILDGDGVPINDAWAEAW 57
           + T SQT+GP+    +   +E   R       ++  QV+I+G + DG G+P++DA  E W
Sbjct: 4   HATPSQTVGPY----YRLGLEPLYRAQIAPEHAAGTQVQISGCVFDGAGMPVSDAVLELW 59

Query: 58  LPGSA--------PVESAH--AIPGYRRVPTNEEGGFAFSISQP---QAPAGKPVA---Y 101
              +A        P  +AH  +  G+ RVPT+ +G +  S  +P     P G+P A    
Sbjct: 60  QADAAGIYAHAHDPRCAAHDPSFDGWGRVPTDAQGRYRLSTIRPGPVAGPNGQPQAAHLV 119

Query: 102 VTVFARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGA 161
           V VF RGL++   T ++  DDP L+   +L  VP +RR TL+AR +  G Y+W+IHMQG 
Sbjct: 120 VLVFMRGLLRGVATRLYFADDPQLSGDPILALVPPERRGTLLARARSAGDYVWDIHMQGD 179

Query: 162 RETVFFDY 169
            ETVFF Y
Sbjct: 180 AETVFFSY 187