BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0028.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777365.1| protocatechuate 3,4-dioxygenase beta chain p... 477 e-133 ref|YP_004752732.1| protocatechuate 3,4-dioxygenase subunit beta... 404 e-111 ref|YP_002908827.1| protocatechuate 3,4-dioxygenase subunit beta... 288 4e-76 ref|YP_001584391.1| protocatechuate 3,4-dioxygenase, beta subuni... 288 5e-76 ref|ZP_02358882.1| protocatechuate 3,4-dioxygenase, beta subunit... 287 1e-75 ref|ZP_02466615.1| protocatechuate 3,4-dioxygenase, beta subunit... 286 1e-75 ref|ZP_02365918.1| protocatechuate 3,4-dioxygenase, beta subunit... 286 1e-75 ref|YP_439316.1| protocatechuate 3,4-dioxygenase subunit beta [B... 286 1e-75 ref|ZP_02381815.1| protocatechuate 3,4-dioxygenase, beta subunit... 286 2e-75 gb|EGD04760.1| protocatechuate 3,4-dioxygenase, beta subunit [Bu... 285 3e-75 >ref|YP_003777365.1| protocatechuate 3,4-dioxygenase beta chain protein [Herbaspirillum seropedicae SmR1] gb|ADJ65457.1| protocatechuate 3,4-dioxygenase beta chain protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/230 (99%), Positives = 230/230 (100%) Query: 1 MQFDAIEPGVYPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTK 60 MQFDAIEPGVYPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTK Sbjct: 1 MQFDAIEPGVYPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTK 60 Query: 61 QGRGEPLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG 120 QG+GEPLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG Sbjct: 61 QGKGEPLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG 120 Query: 121 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA 180 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA Sbjct: 121 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA 180 Query: 181 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI 230 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI Sbjct: 181 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI 230 >ref|YP_004752732.1| protocatechuate 3,4-dioxygenase subunit beta [Collimonas fungivorans Ter331] gb|AEK61909.1| Protocatechuate 3,4-dioxygenase beta chain [Collimonas fungivorans Ter331] Length = 230 Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/230 (81%), Positives = 210/230 (91%) Query: 1 MQFDAIEPGVYPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTK 60 M+F++ E GVYP LIYPPY STVKRGPT+ PLR+R N+ ASP LILPHD DLT+ Sbjct: 1 MRFESTETGVYPSLIYPPYLSTVKRGPTREPLRIRAAEPVQANITASPSLILPHDTDLTR 60 Query: 61 QGRGEPLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG 120 G+GEPLGEKIVVTGRV+DEDGKPVRNSLLEVWQCN+AGRY+HK+DQHDAPLDPNF GFG Sbjct: 61 HGQGEPLGEKIVVTGRVLDEDGKPVRNSLLEVWQCNSAGRYWHKRDQHDAPLDPNFFGFG 120 Query: 121 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA 180 KMLTDD+GRYRFV+IKPGPYPWGNHHKAWRPAHIHFSLFG+VYAQRLVTQMYFP+DPLF Sbjct: 121 KMLTDDDGRYRFVTIKPGPYPWGNHHKAWRPAHIHFSLFGSVYAQRLVTQMYFPSDPLFD 180 Query: 181 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI 230 YDPIFQSIPD AARQRLI+RFSLE+T+DD+MLGYEFDIVLRGR+ATPM + Sbjct: 181 YDPIFQSIPDLAARQRLIARFSLEQTIDDQMLGYEFDIVLRGRDATPMSL 230 >ref|YP_002908827.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia glumae BGR1] gb|ACR31592.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia glumae BGR1] Length = 234 Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 145/223 (65%), Positives = 170/223 (76%), Gaps = 9/223 (4%) Query: 11 YPELIYPPYKSTVKRGPTQ--APLR--VRDEIATGTNLFASPKL-ILPHDMDLTKQGRGE 65 +P ++P Y+S+VKRGPTQ PLR +RD+ ++ S L L HD+ GE Sbjct: 14 HPAYVHPDYRSSVKRGPTQPLVPLRERLRDQRVP---VYGSDDLGALDHDLTRNAMKNGE 70 Query: 66 PLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTD 125 PLGE+I+VTGRV+DE GKPVRN+L+EVWQ NAAGRY HK D+HDAPLDPNF G G+ LTD Sbjct: 71 PLGERIIVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKADRHDAPLDPNFLGAGRCLTD 130 Query: 126 DNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIF 185 D GRYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL YDPIF Sbjct: 131 DQGRYRFLTIKPGAYPWGNHTNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLQYDPIF 190 Query: 186 QSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 Q P EAAR+RL+SRFSLE T + LGYEFDIVLRGR+ATPM Sbjct: 191 QGTP-EAARERLVSRFSLEVTEESYALGYEFDIVLRGRDATPM 232 >ref|YP_001584391.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans ATCC 17616] ref|YP_001948482.1| protocatechuate 3,4-dioxygenase beta subunit [Burkholderia multivorans ATCC 17616] ref|ZP_03569700.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans CGD2M] ref|ZP_03576341.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans CGD2] ref|ZP_03585728.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans CGD1] gb|ABX18099.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans ATCC 17616] dbj|BAG45946.1| protocatechuate 3,4-dioxygenase beta subunit [Burkholderia multivorans ATCC 17616] gb|EEE00320.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans CGD1] gb|EEE09684.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans CGD2] gb|EEE15607.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia multivorans CGD2M] Length = 235 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 142/220 (64%), Positives = 170/220 (77%), Gaps = 3/220 (1%) Query: 11 YPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTKQG--RGEPLG 68 +P ++P Y+S+VKRGPT+ + +++++ + + P D DLTK GEPLG Sbjct: 15 HPAYVHPEYRSSVKRGPTRPLIPLKEKLRDQYAPVYGAEDLGPLDHDLTKNAVKNGEPLG 74 Query: 69 EKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTDDNG 128 E+IVVTGRV+DE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTDD G Sbjct: 75 ERIVVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTDDEG 134 Query: 129 RYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIFQSI 188 RYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL AYDPIFQ Sbjct: 135 RYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLAYDPIFQGT 194 Query: 189 PDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 P EAAR+RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 195 P-EAARERLISRFSMDITEEGYALGYEFDIVLRGRDATPM 233 >ref|ZP_02358882.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia oklahomensis EO147] Length = 236 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/220 (64%), Positives = 168/220 (76%), Gaps = 3/220 (1%) Query: 11 YPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTKQG--RGEPLG 68 +P I+PPY+S+VKRGPTQ + ++D++ + P D DLTK GEPLG Sbjct: 14 HPAYIHPPYRSSVKRGPTQPLIPLKDKLRNQHAPVYGADDLGPLDHDLTKNAVRNGEPLG 73 Query: 69 EKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTDDNG 128 E+I+VTGRV+DE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTD++G Sbjct: 74 ERIIVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTDEHG 133 Query: 129 RYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIFQSI 188 RYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL A DPIFQ Sbjct: 134 RYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGARLVTQMYFPGDPLLALDPIFQGT 193 Query: 189 PDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 P E AR RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 194 P-EDARDRLISRFSIDTTEEGFALGYEFDIVLRGRDATPM 232 >ref|ZP_02466615.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia thailandensis MSMB43] Length = 234 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/220 (64%), Positives = 167/220 (75%), Gaps = 3/220 (1%) Query: 11 YPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTKQG--RGEPLG 68 +P I+PPY+S+VKRGPTQ + +++ + + P D DLTK GEPLG Sbjct: 14 HPAYIHPPYRSSVKRGPTQPLIPLKETLRNQRAPVYGAADLGPLDHDLTKNAAKNGEPLG 73 Query: 69 EKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTDDNG 128 E+IVVTGRV+DE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ +TD+NG Sbjct: 74 ERIVVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCVTDENG 133 Query: 129 RYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIFQSI 188 RYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL A DPIFQ Sbjct: 134 RYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLALDPIFQGT 193 Query: 189 PDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 P E AR RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 194 P-EDARDRLISRFSIDTTEEGFALGYEFDIVLRGRDATPM 232 >ref|ZP_02365918.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia oklahomensis C6786] Length = 234 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/220 (64%), Positives = 168/220 (76%), Gaps = 3/220 (1%) Query: 11 YPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTKQG--RGEPLG 68 +P I+PPY+S+VKRGPTQ + ++D++ + P D DLTK GEPLG Sbjct: 14 HPAYIHPPYRSSVKRGPTQPLIPLKDKLRNQHAPVYGADDLGPLDHDLTKNAVRNGEPLG 73 Query: 69 EKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTDDNG 128 E+I+VTGRV+DE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTD++G Sbjct: 74 ERIIVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTDEHG 133 Query: 129 RYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIFQSI 188 RYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL A DPIFQ Sbjct: 134 RYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGARLVTQMYFPGDPLLALDPIFQGT 193 Query: 189 PDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 P E AR RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 194 P-EDARDRLISRFSIDTTEEGFALGYEFDIVLRGRDATPM 232 >ref|YP_439316.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia thailandensis E264] ref|ZP_02370593.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia thailandensis TXDOH] ref|ZP_02384480.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia thailandensis Bt4] ref|ZP_05590695.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia thailandensis E264] gb|ABC34153.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia thailandensis E264] Length = 234 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/220 (64%), Positives = 168/220 (76%), Gaps = 3/220 (1%) Query: 11 YPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTKQG--RGEPLG 68 +P I+PPY+S+VKRGPTQ + +++++ + P D DLTK GEPLG Sbjct: 14 HPAYIHPPYRSSVKRGPTQPLIPLKEKLRNQHAPVYGADDLGPLDHDLTKNAAKNGEPLG 73 Query: 69 EKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTDDNG 128 E+IVVTGRV+DE GKPVRN+L+EVWQ NAAGRY HK D+HDAPLDPNF G G+ LTD+NG Sbjct: 74 ERIVVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDRHDAPLDPNFLGAGRCLTDENG 133 Query: 129 RYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIFQSI 188 RYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL A DPIFQ Sbjct: 134 RYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLALDPIFQGT 193 Query: 189 PDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 P E AR RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 194 P-EDARDRLISRFSIDTTEEGFALGYEFDIVLRGRDATPM 232 >ref|ZP_02381815.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia ubonensis Bu] Length = 235 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/223 (65%), Positives = 171/223 (76%), Gaps = 9/223 (4%) Query: 11 YPELIYPPYKSTVKRGPTQ--APLR--VRDEIATGTNLFASPKL-ILPHDMDLTKQGRGE 65 +P I+P Y+S+VKRGPT+ PL+ +RD+ A ++ + L L HD+ GE Sbjct: 15 HPAYIHPEYRSSVKRGPTRPLIPLKEKLRDQYAP---VYGAEDLGALDHDLTKNAVKNGE 71 Query: 66 PLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTD 125 PLGE+IVVTGRV+DE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTD Sbjct: 72 PLGERIVVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTD 131 Query: 126 DNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIF 185 D GRYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL AYDPIF Sbjct: 132 DEGRYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLAYDPIF 191 Query: 186 QSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 Q P EAAR RLISRFSL+ T + LGYEFDIVLRGR+ATPM Sbjct: 192 QGTP-EAARDRLISRFSLDITEEGYALGYEFDIVLRGRDATPM 233 >gb|EGD04760.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia sp. TJI49] Length = 235 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/223 (65%), Positives = 171/223 (76%), Gaps = 9/223 (4%) Query: 11 YPELIYPPYKSTVKRGPTQ--APLR--VRDEIATGTNLFASPKL-ILPHDMDLTKQGRGE 65 +P I+P Y+S+VKRGPT+ PL+ +RD+ A ++ + L L HD+ GE Sbjct: 15 HPAYIHPEYRSSVKRGPTRPLIPLKEKLRDQYAP---VYGAEDLGALDHDLTKNAVKNGE 71 Query: 66 PLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTD 125 PLGE+IVVTGRV+DE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTD Sbjct: 72 PLGERIVVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTD 131 Query: 126 DNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIF 185 D GRYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL AYDPIF Sbjct: 132 DEGRYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLAYDPIF 191 Query: 186 QSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 Q P EAAR RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 192 QGTP-EAARDRLISRFSMDITEEGYALGYEFDIVLRGRDATPM 233