BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0022.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777359.1| response regulator transcription regulator p...   345   1e-93
ref|YP_003776129.1| sensory transduction regulatory protein [Her...    93   2e-17
ref|YP_003776604.1| sensory transduction regulatory protein [Her...    89   2e-16
ref|ZP_08432299.1| two-component response regulator, CheY subfam...    71   8e-11

>ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65451.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 188

 Score =  345 bits (885), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/176 (98%), Positives = 174/176 (98%)

Query: 1   MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 60
           MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72

Query: 61  LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 120
           LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER
Sbjct: 73  LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 132

Query: 121 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLVPPGGKRSRLS 176
           YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLV PGGKR RLS
Sbjct: 133 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLVAPGGKRWRLS 188


>ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64221.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 140

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 76/134 (56%), Gaps = 2/134 (1%)

Query: 1   MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGR-RSGDCATPSL 59
           MS PSI+M+DPSPE+ ELARF LWR  L CAF   +D   A + L + + R+     P L
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60

Query: 60  ILLESDMECGDGLELLRELRASSHLAEAPVVVF-PSHDTEGEREALDAGATAYLPKPIDG 118
           ILLE  +   +GLELL  LRA +H    PVV+F  S D      A  AGA  YL KP+D 
Sbjct: 61  ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120

Query: 119 ERYARCVVEMVERW 132
             +   V + V RW
Sbjct: 121 RAFMELVSQTVRRW 134


>ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64696.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 154

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 1   MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 60
           M  P I+MI+ + EA ELARFALWR+  HC  +   +   A   LL   R  D   P LI
Sbjct: 1   MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60

Query: 61  LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGER-EALDAGATAYLPKPIDGE 119
           LL+  M   +G++ +  ++A       PVVVFP  D   E  + L+AGA+AYL KP    
Sbjct: 61  LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120

Query: 120 RYARCVVE 127
           +Y + VVE
Sbjct: 121 QYMQAVVE 128


>ref|ZP_08432299.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gb|EGJ28459.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 144

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 1/141 (0%)

Query: 2   SFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLIL 61
            FP I++I+  P   EL R AL +A L        D   A   L       D   P LIL
Sbjct: 4   KFPEILLIEDDPGDIELTRKALNKAKLAINLHVVMDGTQALAYLYREGEYADSQQPDLIL 63

Query: 62  LESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGE-REALDAGATAYLPKPIDGER 120
           L+ ++   +G E+L+ ++   +L + PVV+  + D + +  ++ D GA  YL KPI  + 
Sbjct: 64  LDLNLPGMNGQEILQHIKGDDNLKQIPVVMLTTSDAQEDIVKSYDLGANCYLKKPISLKE 123

Query: 121 YARCVVEMVERWCDVSEAAAP 141
           + + +  + + W  V +   P
Sbjct: 124 FDKIIEALEDFWFSVVKLPPP 144