BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0004.p (173 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777340.1| single-strand DNA-binding protein (helix-des... 348 1e-94 ref|YP_004751135.1| single-stranded DNA-binding protein [Collimo... 260 6e-68 ref|YP_001101326.1| ssDNA-binding protein controls activity of R... 240 5e-62 ref|YP_001355029.1| single-strand DNA-binding protein [Janthinob... 234 3e-60 ref|ZP_05990307.1| single-strand DNA-binding protein [Mannheimia... 218 3e-55 ref|ZP_04577259.1| single-stranded DNA-binding protein [Oxalobac... 215 2e-54 gb|EGW61919.1| single-strand binding protein [Dechlorosoma suill... 197 4e-49 ref|ZP_08506830.1| Single-stranded DNA-binding protein [Methylov... 190 6e-47 ref|YP_001019308.1| single-strand binding protein [Methylibium p... 187 4e-46 ref|YP_004684263.1| single-stranded DNA-binding protein Ssb [Cup... 184 4e-45 >ref|YP_003777340.1| single-strand DNA-binding protein (helix-destabilizing protein) [Herbaspirillum seropedicae SmR1] emb|CAM32653.1| single-strand DNA-binding protein (helix-destabilizing protein) [Herbaspirillum seropedicae] gb|ADJ65432.1| single-strand DNA-binding protein (helix-destabilizing protein) [Herbaspirillum seropedicae SmR1] Length = 173 Score = 348 bits (894), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR Sbjct: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD Sbjct: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 Query: 121 EGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 EGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF Sbjct: 121 EGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 >ref|YP_004751135.1| single-stranded DNA-binding protein [Collimonas fungivorans Ter331] gb|AEK60312.1| Single-stranded DNA-binding protein [Collimonas fungivorans Ter331] Length = 190 Score = 260 bits (664), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 135/174 (77%), Positives = 140/174 (80%), Gaps = 11/174 (6%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKN+GEKKELTEWHRITFYR Sbjct: 27 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYR 86 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGG-M 119 KLAEIAGQYLKKGSQIY+EGRLQTRKWQDK+G ERYTTEIIADTMQMLGSRQG GG M Sbjct: 87 KLAEIAGQYLKKGSQIYIEGRLQTRKWQDKDGAERYTTEIIADTMQMLGSRQGAGGSAPM 146 Query: 120 DEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 D GG Y P + + Q PA RPAPNFSDMDDDIPF Sbjct: 147 D--------GGDYNSAPPARQQNTSAPAAPAR--QAPASRPAPNFSDMDDDIPF 190 >ref|YP_001101326.1| ssDNA-binding protein controls activity of RecBCD nuclease [Herminiimonas arsenicoxydans] emb|CAL63205.1| Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) [Herminiimonas arsenicoxydans] Length = 161 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/176 (71%), Positives = 137/176 (77%), Gaps = 18/176 (10%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVIIVGNLGRDPETRYMPNGEAVTN+AVATTESWKDK +G+KKE+TEWHRITFYR Sbjct: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNVAVATTESWKDKTSGDKKEVTEWHRITFYR 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQML--GSRQGGGGGG 118 KLAEIAGQYLKKGS +Y+EGRLQTRKW DK+GVERYTTEIIADTMQML GGG Sbjct: 61 KLAEIAGQYLKKGSSVYIEGRLQTRKWTDKDGVERYTTEIIADTMQMLGGRPGAGGGSSA 120 Query: 119 MDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRP-APNFSDMDDDIPF 173 MD+ YG APRQS+ G +PA +P A NF+DMDDDIPF Sbjct: 121 MDD-DYGS------SAPAPRQSSAGQSA--------RPAAKPAASNFNDMDDDIPF 161 >ref|YP_001355029.1| single-strand DNA-binding protein [Janthinobacterium sp. Marseille] gb|ABR89012.1| single-strand DNA-binding protein [Janthinobacterium sp. Marseille] Length = 162 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/175 (72%), Positives = 138/175 (78%), Gaps = 15/175 (8%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVIIVGNLGRDPETRYMPNGEAVTN+AVATTESWKDKN+G+KKE+TEWHRITFYR Sbjct: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNVAVATTESWKDKNSGDKKEITEWHRITFYR 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQML--GSRQGGGGGG 118 KLAEIAGQYLKKGS +YVEGRLQTRKW DK+GVERYTTEIIADTMQML GGG G Sbjct: 61 KLAEIAGQYLKKGSAVYVEGRLQTRKWTDKDGVERYTTEIIADTMQMLGGRPGAGGGSAG 120 Query: 119 MDEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 MD+ YG APRQS+GGG ++ A NF+DMDDDIPF Sbjct: 121 MDD-DYGS------SAPAPRQSSGGGNARPAA------KPAAASNFNDMDDDIPF 162 >ref|ZP_05990307.1| single-strand DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] ref|ZP_05990772.1| single-strand DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gb|EEY11290.1| single-strand DNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gb|EEY11761.1| single-strand DNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 191 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 109/175 (62%), Positives = 131/175 (74%), Gaps = 6/175 (3%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MA +NKVIIVGNLG DPE R MPNGEAV NI+VAT+ESW DKNTGE++E+TEWHRI FYR Sbjct: 21 MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYR 80 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 + AE+ GQYL+KGSQ+YVEGRL+TRKWQD+ G +RYTTEI D +QMLGSRQG GG Sbjct: 81 RQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMGGQ- 139 Query: 121 EGGYGGG--GGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 +GG+G G SY G S G S+AP+ +PA +P P ++ DDDIPF Sbjct: 140 QGGWGNSAPAGNSYNQG---NSNYGYNQTQSAAPQSKPAPQPEPAMNNFDDDIPF 191 >ref|ZP_04577259.1| single-stranded DNA-binding protein [Oxalobacter formigenes HOxBLS] gb|EEO28221.1| single-stranded DNA-binding protein [Oxalobacter formigenes HOxBLS] Length = 156 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/173 (64%), Positives = 128/173 (73%), Gaps = 17/173 (9%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MAS+NKVIIVGNLGRDPE RY+P+GE VT IAVATT+ WKDK TGE+KE TEWHR++F+ Sbjct: 1 MASINKVIIVGNLGRDPENRYLPSGEQVTGIAVATTDRWKDKATGEQKEATEWHRVSFFG 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 KLAEIAGQYLKKGSQ+Y+EGRL+TRK+ DKEG++RY TEIIADTMQMLGSRQG G D Sbjct: 61 KLAEIAGQYLKKGSQVYIEGRLRTRKYTDKEGIDRYATEIIADTMQMLGSRQGAGDPSDD 120 Query: 121 EGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 G Y P Q+AG GS RP P+ SDMDDDIPF Sbjct: 121 RGAY-------QPPSRPAQNAGQQRQQGS---------RP-PSLSDMDDDIPF 156 >gb|EGW61919.1| single-strand binding protein [Dechlorosoma suillum PS] Length = 164 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 107/174 (61%), Positives = 129/174 (74%), Gaps = 11/174 (6%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MA+VNKVI++GNLG DPETRYMPNG+AV + +ATTE+WKD+N+GEK+E TEWHR+ F+R Sbjct: 1 MAAVNKVILLGNLGADPETRYMPNGDAVATVRLATTETWKDRNSGEKREATEWHRVVFFR 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQML-GSRQGGGGGGM 119 KLAEI GQYLKKGS +Y+EGR++TRKWQDK+G ERYTTEI A MQML G GG GG Sbjct: 61 KLAEIVGQYLKKGSSVYIEGRIRTRKWQDKDGQERYTTEIEATEMQMLGGRGGQGGQGGG 120 Query: 120 DEGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 173 YGGG G +PR SA SAP+++ AP+F DMDDDIPF Sbjct: 121 SGASYGGGDDFGGGDFSPRSSAPAA-----SAPKKK-----APSFDDMDDDIPF 164 >ref|ZP_08506830.1| Single-stranded DNA-binding protein [Methyloversatilis universalis FAM5] gb|EGK69957.1| Single-stranded DNA-binding protein [Methyloversatilis universalis FAM5] Length = 180 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 89/112 (79%), Positives = 101/112 (90%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVIIVGNLGRDPETRY PNG+A+ NI VATT+SWKDK TGE+KE TEWHR++FY Sbjct: 1 MASVNKVIIVGNLGRDPETRYAPNGDAICNITVATTDSWKDKQTGERKEQTEWHRVSFYG 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQ 112 +LAEIAGQYL+KGS +YVEG L+TRKWQDKEG +RYTTEI A+ MQMLGSRQ Sbjct: 61 RLAEIAGQYLRKGSPVYVEGSLRTRKWQDKEGQDRYTTEIRAEQMQMLGSRQ 112 >ref|YP_001019308.1| single-strand binding protein [Methylibium petroleiphilum PM1] gb|ABM93073.1| single-strand binding protein [Methylibium petroleiphilum PM1] Length = 173 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 105/176 (59%), Positives = 130/176 (73%), Gaps = 6/176 (3%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MAS+NKVI++GNLGRDPE RY P+G AV NI++ATT +WK K++G+K E TEWHR+ FY Sbjct: 1 MASINKVILIGNLGRDPEVRYTPSGSAVCNISLATTRNWKSKDSGDKVEETEWHRVVFYD 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 +LAEIAG+YLKKG +YVEGRL+TRKWQDK+G E+YTTEIIA+ MQ+LG R+G GGG Sbjct: 61 RLAEIAGEYLKKGRPVYVEGRLKTRKWQDKDGAEKYTTEIIAEQMQLLGGREGMGGGDDG 120 Query: 121 EGGYGGGGGGSYGGGAPRQSAGGGGGGGSSAPRQQPA---QRPAPNFSDMDDDIPF 173 GG G GG AP+++A +S RQ PA Q+ A F DMDDDIPF Sbjct: 121 GGGGYSRGDEG-GGEAPQRAARPPQRPAAS--RQAPAPAPQKSATGFDDMDDDIPF 173 >ref|YP_004684263.1| single-stranded DNA-binding protein Ssb [Cupriavidus necator N-1] gb|AEI75782.1| single-stranded DNA-binding protein Ssb [Cupriavidus necator N-1] Length = 182 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 114/182 (62%), Positives = 139/182 (76%), Gaps = 9/182 (4%) Query: 1 MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60 MASVNKVI+VGNLG DPETRY+P+G+AVTNI +ATT+ +KDK +GE KE TEWHR++F+ Sbjct: 1 MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRVSFFG 60 Query: 61 KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMD 120 K+AEIAGQYL+KGS +Y+EGR++TRKWQD+ G ++Y+TEI+AD MQMLGSRQGGGGGG + Sbjct: 61 KIAEIAGQYLRKGSSVYIEGRIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGDE 120 Query: 121 EGGYGGGGGGSYG--------GGAPRQSAGGGGGGGSSAPRQQPAQRPAPN-FSDMDDDI 171 G GG GGG Y GG R GG GGG S + Q+PA N F DMDDDI Sbjct: 121 GGYGGGAGGGGYSREASGGGYGGGARGGQGGAQGGGQSGGAARRPQQPASNGFEDMDDDI 180 Query: 172 PF 173 PF Sbjct: 181 PF 182