BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0235.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775797.1| flavodoxin protein [Herbaspirillum seropedic... 331 3e-89 ref|YP_559162.1| hypothetical protein Bxe_A1855 [Burkholderia xe... 128 3e-28 ref|YP_001889293.1| hypothetical protein Bphyt_5572 [Burkholderi... 128 3e-28 ref|YP_004520062.1| flavodoxin-like protein [Methanobacterium sp... 127 5e-28 ref|YP_003357240.1| hypothetical protein MCP_2185 [Methanocella ... 125 3e-27 ref|ZP_06843762.1| conserved hypothetical protein [Burkholderia ... 124 4e-27 ref|YP_004231435.1| hypothetical protein BC1001_4994 [Burkholder... 122 2e-26 ref|ZP_02885385.1| conserved hypothetical protein [Burkholderia ... 120 8e-26 ref|YP_001862163.1| hypothetical protein Bphy_6055 [Burkholderia... 120 8e-26 ref|YP_003906636.1| hypothetical protein BC1003_1370 [Burkholder... 119 2e-25 >ref|YP_003775797.1| flavodoxin protein [Herbaspirillum seropedicae SmR1] gb|ADJ63889.1| flavodoxin protein [Herbaspirillum seropedicae SmR1] Length = 160 Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 160/160 (100%), Positives = 160/160 (100%) Query: 1 MMHNCLVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPR 60 MMHNCLVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPR Sbjct: 1 MMHNCLVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPR 60 Query: 61 ISTSGKDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAE 120 ISTSGKDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAE Sbjct: 61 ISTSGKDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAE 120 Query: 121 MADLCGKTPMARVAITDAEIRRGSYRGKLERLQNNALESS 160 MADLCGKTPMARVAITDAEIRRGSYRGKLERLQNNALESS Sbjct: 121 MADLCGKTPMARVAITDAEIRRGSYRGKLERLQNNALESS 160 >ref|YP_559162.1| hypothetical protein Bxe_A1855 [Burkholderia xenovorans LB400] gb|ABE31110.1| hypothetical protein Bxe_A1855 [Burkholderia xenovorans LB400] Length = 191 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 88/144 (61%) Query: 6 LVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTSG 65 LVV +SR+G T + A + AD E I D R G LGY+R L +S + I +G Sbjct: 27 LVVFFSRTGTTRTLASTLARMLSADMEEICDCTERRGALGYMRCLVDSWRKRPAEIVPAG 86 Query: 66 KDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADLC 125 D +Y LVV+GTPVWAG+++AP+R+YL +R +F VA FC++GG GG+ EM DL Sbjct: 87 LDTAQYDLVVVGTPVWAGSVSAPVRAYLLENRWKFRHVAFFCSLGGLGGQTAFDEMRDLA 146 Query: 126 GKTPMARVAITDAEIRRGSYRGKL 149 GK P+A+ + AE+ RG+ L Sbjct: 147 GKAPVAQCKVRAAEVHRGAVAASL 170 >ref|YP_001889293.1| hypothetical protein Bphyt_5572 [Burkholderia phytofirmans PsJN] gb|ACD19923.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 170 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 90/140 (64%) Query: 6 LVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTSG 65 LVV +SR+G T + A + GAD E I D +R GP GYLRSL +++ ++ I +G Sbjct: 7 LVVYFSRTGTTRLLASAIATMLGADIEEICDCSNREGPGGYLRSLLDAIRKRQVEIVPAG 66 Query: 66 KDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADLC 125 D Y LVV+G+PVWAG+++AP+RSYL +R +F ++A FC+ GGRG + L EM +L Sbjct: 67 LDVSAYDLVVVGSPVWAGSVSAPVRSYLIENRAKFSQIAFFCSFGGRGADKALHEMCELV 126 Query: 126 GKTPMARVAITDAEIRRGSY 145 GK +A +T E R G++ Sbjct: 127 GKPAVAECKVTAVEARHGAH 146 >ref|YP_004520062.1| flavodoxin-like protein [Methanobacterium sp. SWAN-1] gb|AEG18261.1| flavodoxin related protein [Methanobacterium sp. SWAN-1] Length = 159 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 89/145 (61%) Query: 5 CLVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTS 64 LV YSRSG+T ++ ++ D E I D + R G +GY++S YE+ K +I + Sbjct: 3 ILVAFYSRSGNTKRIAESISESLNCDIEEIVDTEKRGGVIGYIKSGYEAFRGKSSKIEDT 62 Query: 65 GKDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADL 124 D +Y LV++GTPVWAG MA P+R+Y+ ++ +F+ +A F T GG + T ++M ++ Sbjct: 63 KNDVSQYDLVIIGTPVWAGKMAVPIRTYITQNHAKFNNMAFFSTAGGTNFDSTFSDMKEV 122 Query: 125 CGKTPMARVAITDAEIRRGSYRGKL 149 G +P+A + + E++ GSY+ K+ Sbjct: 123 SGASPIAEIGVRAKEVQDGSYKPKI 147 >ref|YP_003357240.1| hypothetical protein MCP_2185 [Methanocella paludicola SANAE] dbj|BAI62257.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 156 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 91/149 (61%) Query: 4 NCLVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRIST 63 LVV YSR+G+T K G+E A G D E I D +R+GP+G++ + ++ ++ Sbjct: 2 KALVVYYSRTGNTRKAGKEIARELGCDVEEIVDTVNRAGPIGFIMAGKQASSKGLTKLKP 61 Query: 64 SGKDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMAD 123 KDP +Y LV++GTPVWA M++P+R+++ ++ + VA F T+GG G TL M + Sbjct: 62 LTKDPSQYDLVIIGTPVWAATMSSPVRTFIVENKDKLKNVAFFITLGGTGEASTLQGMEE 121 Query: 124 LCGKTPMARVAITDAEIRRGSYRGKLERL 152 CGK PMA + I ++I+ G+Y L++ Sbjct: 122 ACGKKPMATLTILTSDIKPGAYLDTLKKF 150 >ref|ZP_06843762.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] gb|EFG68645.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] Length = 171 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 86/144 (59%) Query: 6 LVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTSG 65 LVV +SR+G T + A + AD E I D R G GY+R L +S + I +G Sbjct: 7 LVVFFSRTGTTRTLASTLATMLSADLEEICDYTERRGAWGYVRCLADSWRKRPAEIVPAG 66 Query: 66 KDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADLC 125 DP +Y LVV+GTPVWAG ++AP+R+YL +R +F VA FC++GG G + EM +L Sbjct: 67 LDPAQYDLVVVGTPVWAGAVSAPVRAYLFENRWKFRHVAFFCSLGGLGSQAAFDEMRELA 126 Query: 126 GKTPMARVAITDAEIRRGSYRGKL 149 GK P+A+ + AE+ RG+ L Sbjct: 127 GKAPVAQCKVRAAEVHRGAVAAVL 150 >ref|YP_004231435.1| hypothetical protein BC1001_4994 [Burkholderia sp. CCGE1001] gb|ADX58375.1| hypothetical protein BC1001_4994 [Burkholderia sp. CCGE1001] Length = 175 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 87/147 (59%) Query: 6 LVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTSG 65 L+V +SR+G T + A + AD E I D R G GYLR + +S + I +G Sbjct: 7 LIVFFSRTGTTRMLASTLASMLSADVEEICDYTERRGASGYLRCVMDSWRKRPAEIVPAG 66 Query: 66 KDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADLC 125 DP +Y LVV+GTP+WAG +++P+R+YL ++R +F + FC++GG G E EM L Sbjct: 67 LDPSQYDLVVVGTPIWAGAVSSPVRAYLLQNRTKFRHIGFFCSLGGLGAEAAFDEMRALA 126 Query: 126 GKTPMARVAITDAEIRRGSYRGKLERL 152 GK P+A+ + A ++RG LERL Sbjct: 127 GKAPVAQCKVRAAHVQRGVAAASLERL 153 >ref|ZP_02885385.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gb|EDT09143.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 171 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 7/153 (4%) Query: 6 LVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTSG 65 LVV +SR+G T ++ A + AD E I D R G LGYLR + +S + I +G Sbjct: 7 LVVFFSRTGTTRRLAGALAGMMSADIEEICDFTERRGALGYLRCVIDSWRKRPAEIVPAG 66 Query: 66 KDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADLC 125 DP +Y LV++GTPVWAG ++AP+R+YL ++R RF V FC GG G EM L Sbjct: 67 LDPSQYDLVLVGTPVWAGAVSAPVRAYLLQNRSRFRHVGFFCIFGGLGAGTAFDEMRALA 126 Query: 126 GKTPMARVAITDAEIRRG-------SYRGKLER 151 GK P+A+ + ++++RG S+ G LER Sbjct: 127 GKAPVAQCKVRASQVQRGVRTTALESFAGVLER 159 >ref|YP_001862163.1| hypothetical protein Bphy_6055 [Burkholderia phymatum STM815] gb|ACC75117.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 178 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 89/157 (56%), Gaps = 4/157 (2%) Query: 3 HNCLVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRIS 62 + LVV +SR+G T K+ A+L GA + I RSGP GY+RSL E+L + +I Sbjct: 4 NKILVVFFSRTGTTRKIASLLANLLGAQVDEIVASTDRSGPFGYVRSLVEALEQRPAQII 63 Query: 63 TSGKDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMA 122 S +D Y LVV+GTPVWA ++A+P+R+YL +R F VA FC+ RG L +M Sbjct: 64 NSTRDVSSYELVVIGTPVWANSIASPVRAYLIANRSHFKNVAFFCSFARRGNRRALDQMR 123 Query: 123 DLCGKTPMARVAITDAEIRRGS----YRGKLERLQNN 155 L G +A ++T E RG R +ERL+ N Sbjct: 124 ALAGMPALAECSLTAREALRGESSEILREFVERLERN 160 >ref|YP_003906636.1| hypothetical protein BC1003_1370 [Burkholderia sp. CCGE1003] gb|ADN57345.1| hypothetical protein BC1003_1370 [Burkholderia sp. CCGE1003] Length = 171 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 83/138 (60%) Query: 6 LVVCYSRSGHTAKVGREFADLCGADFEAIDDLDSRSGPLGYLRSLYESLFHKEPRISTSG 65 L+V +SR+G T ++ A L AD E I D R G GYL +++S + +I +G Sbjct: 7 LIVFFSRTGTTRRLATALAGLLSADVEEICDYTERRGASGYLHCVFDSWRKRPAQIVPTG 66 Query: 66 KDPGEYALVVLGTPVWAGNMAAPMRSYLARHRLRFHRVALFCTMGGRGGEHTLAEMADLC 125 DP +Y LVV+GTPVWAG ++AP+R+YL ++R + VA FCT+GG G E EM L Sbjct: 67 LDPSQYDLVVIGTPVWAGAVSAPVRAYLLQNRSKLRHVAFFCTLGGLGAEGVFDEMRALA 126 Query: 126 GKTPMARVAITDAEIRRG 143 GK P+ + + AEI G Sbjct: 127 GKAPVVQCKVRAAEIEHG 144