BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0221.p (107 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775811.1| DnaK suppressor protein [Herbaspirillum sero... 206 9e-52 ref|YP_001100615.1| putative dnaK suppressor protein [Herminiimo... 79 2e-13 ref|YP_003748172.1| dnak suppressor protein [Ralstonia solanacea... 72 2e-11 ref|ZP_08485948.1| transcriptional regulator, TraR/DksA family [... 69 2e-10 gb|AEG68906.1| putative dnak suppressor protein [Ralstonia solan... 68 4e-10 ref|YP_295377.1| hypothetical protein Reut_A1158 [Ralstonia eutr... 67 1e-09 gb|EGC98968.1| putative regulatory protein [Burkholderia sp. TJI49] 66 1e-09 ref|YP_001892951.1| TraR/DksA family transcriptional regulator [... 66 2e-09 ref|YP_726461.1| DnaK suppressor protein [Ralstonia eutropha H16... 65 3e-09 ref|ZP_02382926.1| transcriptional regulator, TraR/DksA family p... 65 4e-09 >ref|YP_003775811.1| DnaK suppressor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63903.1| DnaK suppressor protein [Herbaspirillum seropedicae SmR1] Length = 110 Score = 206 bits (524), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 106/110 (96%), Positives = 106/110 (96%), Gaps = 3/110 (2%) Query: 1 MRHLSTQQLVRLRSLLDTAESALRQRIQVQDLAGDD---TVGVRHFMSDQDLHELLDITN 57 MRHLSTQQLVRLRSLLDTAESALRQRIQ QDLAGDD TVGVRHFMSDQDLHELLDITN Sbjct: 1 MRHLSTQQLVRLRSLLDTAESALRQRIQAQDLAGDDGEDTVGVRHFMSDQDLHELLDITN 60 Query: 58 ARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQRRAHLLS 107 ARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQRRAHLLS Sbjct: 61 ARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQRRAHLLS 110 >ref|YP_001100615.1| putative dnaK suppressor protein [Herminiimonas arsenicoxydans] emb|CAL62493.1| Conserved hypothetical protein, putative zinc finger domain [Herminiimonas arsenicoxydans] Length = 106 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 3/104 (2%) Query: 1 MRHLSTQQLVRLRSLLDTAE--SALRQRIQVQDLAGD-DTVGVRHFMSDQDLHELLDITN 57 M L+ +QL+ L+ LLDT E + +R R+ + + + D + V M +L EL DI Sbjct: 1 MADLTERQLIHLQELLDTQEISARIRARVAIPEESDDCEPTDVDDAMIKMELVELADIEA 60 Query: 58 ARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQR 101 A R+ ++ YG+C+DCG ID RL A PTAKRC CQRL EQR Sbjct: 61 AHRRIDNHQYGLCIDCGCTIDYARLQASPTAKRCTQCQRLHEQR 104 >ref|YP_003748172.1| dnak suppressor protein [Ralstonia solanacearum CFBP2957] emb|CBJ53780.1| putative dnak suppressor protein [Ralstonia solanacearum CFBP2957] Length = 120 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 21/122 (17%) Query: 1 MRHLSTQQLVRLRSLLDTAESALRQRIQVQDLAGDDTVGVRHF------MSDQDL----- 49 M HL+ Q RLR+LLD ++ +R+ Q+++L +T G + ++DQ++ Sbjct: 1 MPHLTEMQWTRLRALLDEQDARIRR--QLENLGASNTDGPQEGPLDEADLADQEMAGQTS 58 Query: 50 --------HELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQR 101 EL + AR RM YGVC+DCG I RL A P AKRCL CQ RE+R Sbjct: 59 GIMLNHYREELAKVEAARERMAQGQYGVCMDCGEPIPFLRLQAQPVAKRCLACQASRERR 118 Query: 102 RA 103 A Sbjct: 119 LA 120 >ref|ZP_08485948.1| transcriptional regulator, TraR/DksA family [Methylomicrobium album BG8] gb|EGL03163.1| transcriptional regulator, TraR/DksA family [Methylomicrobium album BG8] Length = 126 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 40/54 (74%) Query: 49 LHELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQRR 102 L+E+ DI A+ R+ +N YG+C DCG I +RLLA+PTAKRC+ CQRL E+ + Sbjct: 71 LNEIKDIEAAQTRITENQYGICQDCGYPIYFKRLLAFPTAKRCVACQRLYEKAK 124 >gb|AEG68906.1| putative dnak suppressor protein [Ralstonia solanacearum Po82] Length = 118 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 17/118 (14%) Query: 1 MRHLSTQQLVRLRSLLDTAESALRQRIQV----------------QDLAGDDTVG-VRHF 43 M L+ Q RL++LLD E +R+++ DLA + G H Sbjct: 1 MTTLTEAQWTRLKALLDEQEGRIRRQMASLGASTAGSLQEGPLDEADLADQEMAGHTSHI 60 Query: 44 MSDQDLHELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQR 101 M + EL I AR RM YGVC DCG I RL A P A+RCL CQ +RE+R Sbjct: 61 MLNHYREELARIEAARWRMAQRQYGVCADCGEPIPFLRLQAQPVAERCLTCQHVRERR 118 >ref|YP_295377.1| hypothetical protein Reut_A1158 [Ralstonia eutropha JMP134] gb|AAZ60533.1| Zn-finger, prokaryotic DksA/TraR C4 type [Ralstonia eutropha JMP134] Length = 124 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 59/121 (48%), Gaps = 27/121 (22%) Query: 1 MRHLSTQQLV-----------RLRSLLDTAESALRQRIQVQ-----DLAGDDTVG----- 39 M L+TQ+L R+R + TA S L +Q + DLA ++ V Sbjct: 1 MPELTTQELAALAVQLDASEARIRDAVGTAASPLAGPMQREARDDADLAEEEVVQRQADA 60 Query: 40 -VRHFMSDQDLHELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLR 98 + H+ + EL DI AR RM+ YG C DCG I RL AYPTA+RC DCQR Sbjct: 61 MLEHYRT-----ELADIRAARERMKAGQYGTCTDCGEAIPYSRLQAYPTARRCADCQRGH 115 Query: 99 E 99 E Sbjct: 116 E 116 >gb|EGC98968.1| putative regulatory protein [Burkholderia sp. TJI49] Length = 130 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 59/121 (48%), Gaps = 21/121 (17%) Query: 4 LSTQQLVRLRSLLDTAESALRQRIQVQ----------DLAG-----------DDTVGVRH 42 L +Q L+ LD +E ALR I+ DLAG D V V H Sbjct: 3 LDERQRQTLQQRLDESERALRAEIRTSEDQRASESYADLAGASPDEGDEANADLFVDVDH 62 Query: 43 FMSDQDLHELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQRR 102 + L EL I AR RM+D SYG C+DC + ERLLA PTA+RC CQ + E+R Sbjct: 63 ALIGMKLTELRAIARARQRMRDGSYGECIDCDAPVGYERLLARPTAERCTHCQAIYERRY 122 Query: 103 A 103 A Sbjct: 123 A 123 >ref|YP_001892951.1| TraR/DksA family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984476.1| TraR/DksA family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29524.1| transcriptional regulator, TraR/DksA family [Ralstonia pickettii 12J] gb|ACS65804.1| transcriptional regulator, TraR/DksA family [Ralstonia pickettii 12D] Length = 120 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 23/123 (18%) Query: 1 MRHLSTQQLVRLRSLLDTAESALRQRIQVQDLAGDDTVGVRHF-------MSDQDL---- 49 M + Q RLRSLLD E+ +R+++ G TV V ++D+++ Sbjct: 1 MSRFTEAQWKRLRSLLDEQEARVRRQLSA---LGPTTVPVPREAPFENADLADEEVGEQT 57 Query: 50 ---------HELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQ 100 EL + AR RMQ +SYG+CVDCG I RL A PTA RCL CQ E+ Sbjct: 58 NDVMLVRYRSELEQLNAARERMQQHSYGICVDCGEAIPFLRLQAQPTAMRCLPCQTACER 117 Query: 101 RRA 103 R A Sbjct: 118 RWA 120 >ref|YP_726461.1| DnaK suppressor protein [Ralstonia eutropha H16] emb|CAJ93093.1| DnaK suppressor protein [Ralstonia eutropha H16] Length = 120 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/50 (60%), Positives = 32/50 (64%) Query: 51 ELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRLREQ 100 +L DI ARARMQ YG C+DC I RL AYPTAKRC CQR EQ Sbjct: 68 QLADIAAARARMQHGQYGTCIDCQQPIPFSRLQAYPTAKRCTACQRRHEQ 117 >ref|ZP_02382926.1| transcriptional regulator, TraR/DksA family protein [Burkholderia ubonensis Bu] Length = 130 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 41/66 (62%) Query: 38 VGVRHFMSDQDLHELLDITNARARMQDNSYGVCVDCGIDIDVERLLAYPTAKRCLDCQRL 97 V V H + L EL + A RM+D SYG CVDC +D ERLLA PTA+RC CQ+L Sbjct: 58 VDVDHALIGMKLAELRAVARALQRMRDGSYGDCVDCDAPVDYERLLARPTAERCAYCQKL 117 Query: 98 REQRRA 103 E+R A Sbjct: 118 HERRYA 123