BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0220.p (579 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775812.1| poly-beta-hydroxyalkanoate synthase [Herbasp... 1177 0.0 ref|ZP_04765133.1| Poly-beta-hydroxybutyrate polymerase domain p... 749 0.0 ref|YP_004128654.1| poly-beta-hydroxybutyrate polymerase domain ... 740 0.0 ref|YP_159900.1| putative poly-beta-hydroxyalkanoate synthase [A... 730 0.0 ref|YP_001892836.1| Poly-beta-hydroxybutyrate polymerase domain ... 716 0.0 ref|ZP_07673442.1| poly(3-hydroxyalkanoate) polymerase family pr... 716 0.0 ref|YP_004390235.1| poly-beta-hydroxybutyrate polymerase domain-... 711 0.0 ref|YP_003748213.1| poly-beta-hydroxybutyrate (PHB) polymerase /... 709 0.0 ref|YP_002354804.1| poly-beta-hydroxybutyrate polymerase domain-... 709 0.0 ref|YP_001414712.1| poly-beta-hydroxybutyrate polymerase domain-... 664 0.0 >ref|YP_003775812.1| poly-beta-hydroxyalkanoate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ63904.1| poly-beta-hydroxyalkanoate synthase protein [Herbaspirillum seropedicae SmR1] Length = 590 Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/579 (99%), Positives = 576/579 (99%) Query: 1 VAGLQEAAIPVAPTVRLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLC 60 VAGLQEAAIPVAPTVRLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLC Sbjct: 12 VAGLQEAAIPVAPTVRLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLC 71 Query: 61 LALQQANHLLHYISRSSSSDPDSPSMLPVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAA 120 LALQQANHLLHYISRSSSSDPDSPSMLPVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAA Sbjct: 72 LALQQANHLLHYISRSSSSDPDSPSMLPVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAA 131 Query: 121 ATRDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMN 180 ATRDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMN Sbjct: 132 ATRDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMN 191 Query: 181 DMIGLLLEKPASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAW 240 DMIGLLLEKPAS ARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETV PEPLLLIPAW Sbjct: 192 DMIGLLLEKPASTARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVCPEPLLLIPAW 251 Query: 241 IMKYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNS 300 IMKYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNS Sbjct: 252 IMKYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNS 311 Query: 301 ACPDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQ 360 ACPDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQ Sbjct: 312 ACPDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQ 371 Query: 361 ISLLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATR 420 ISLLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATR Sbjct: 372 ISLLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATR 431 Query: 421 MPALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLH 480 MPALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLH Sbjct: 432 MPALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLH 491 Query: 481 SLCPAEITFVLASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWW 540 SLCPAEITFVLASGGHNAGIVSPPGH RSQFQISTRAAGASYRSADEWMAGTSVTTGSWW Sbjct: 492 SLCPAEITFVLASGGHNAGIVSPPGHPRSQFQISTRAAGASYRSADEWMAGTSVTTGSWW 551 Query: 541 PAWADWLAQRSGTPVPAAGMGYDKAHSLADAPGNYIMEQ 579 PAWADWLAQRSGTPVPAAGMGYDKAHSLADAPGNYIMEQ Sbjct: 552 PAWADWLAQRSGTPVPAAGMGYDKAHSLADAPGNYIMEQ 590 >ref|ZP_04765133.1| Poly-beta-hydroxybutyrate polymerase domain protein [Acidovorax delafieldii 2AN] gb|EER58061.1| Poly-beta-hydroxybutyrate polymerase domain protein [Acidovorax delafieldii 2AN] Length = 581 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/577 (64%), Positives = 432/577 (74%), Gaps = 4/577 (0%) Query: 7 AAIPVAPTVRLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQA 66 A PV+ RLD +HAALAR SLS S +A +DWA HLAVSPG R++L LAL+Q Sbjct: 5 ANAPVSMAERLDPALHAALARCVASLSHASAFMAASDWAMHLAVSPGHRMDLAHLALRQG 64 Query: 67 NHLLHYISRSSSSDPDSPSML----PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAAT 122 + Y ++ PD + P+ DRRF++P WQ+WPFNL HQSF+L EQWWAAAT Sbjct: 65 QEMASYAQARLAAGPDREARHAVEPPIQDRRFADPAWQQWPFNLMHQSFVLTEQWWAAAT 124 Query: 123 RDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDM 182 VWGVEKHH D+VAFAARQ LDVFSP NQLLTNP VL+ T+EQ GANL+ G N + D Sbjct: 125 HGVWGVEKHHEDMVAFAARQFLDVFSPGNQLLTNPVVLQRTVEQGGANLVRGALNLLEDA 184 Query: 183 IGLLLEKPASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWIM 242 P + F+ GRDV ++PGKVVL+NR+MELI+YAP T+ V+PEP+L++PAWIM Sbjct: 185 RRQAAGAPPAGTEQFVVGRDVGITPGKVVLKNRLMELIQYAPTTKAVHPEPVLIVPAWIM 244 Query: 243 KYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSAC 302 KYYILDLSP NSLI+YLV+ GHTVFC+SWKNP DRDL MDDYLD GF AALDAVN+ Sbjct: 245 KYYILDLSPHNSLIKYLVDNGHTVFCISWKNPGAEDRDLGMDDYLDLGFRAALDAVNAIA 304 Query: 303 PDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQIS 362 P RKVH GYCLGGTLL+IAAAAMARD D RLAS+TL AAQTDFTEPGELGLFID+SQIS Sbjct: 305 PHRKVHAAGYCLGGTLLAIAAAAMARDSDDRLASMTLFAAQTDFTEPGELGLFIDDSQIS 364 Query: 363 LLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMP 422 LLEAQM Q G L+ +QMA AFQMLRSYDLLWSR++ +YL+G +DLM WNADATRMP Sbjct: 365 LLEAQMAQTGYLTAAQMAGAFQMLRSYDLLWSRLVNEYLLGDRPAMNDLMAWNADATRMP 424 Query: 423 ALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHSL 482 A MHSQYLRRLFL+DDLSEGRY VDGKPV L D+ LP F+VGTV DHVAPWRSV+KL L Sbjct: 425 ARMHSQYLRRLFLNDDLSEGRYPVDGKPVTLGDITLPTFMVGTVTDHVAPWRSVFKLQQL 484 Query: 483 CPAEITFVLASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWPA 542 PAE TFVL SGGHNAGIVSPPGH FQ+ TR AG ++ D+W+A T GSWWPA Sbjct: 485 SPAETTFVLTSGGHNAGIVSPPGHPHRHFQMQTRPAGGNFVPPDDWLAAAPQTIGSWWPA 544 Query: 543 WADWLAQRSGTPVPAAGMGYDKAHSLADAPGNYIMEQ 579 W WL RSG P MG S DAPG Y++E+ Sbjct: 545 WLAWLQARSGAPAKPPRMGAAGFPSQGDAPGTYVLEK 581 >ref|YP_004128654.1| poly-beta-hydroxybutyrate polymerase domain protein [Alicycliphilus denitrificans BC] gb|ADV01767.1| Poly-beta-hydroxybutyrate polymerase domain protein [Alicycliphilus denitrificans BC] Length = 580 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/569 (65%), Positives = 434/569 (76%), Gaps = 6/569 (1%) Query: 16 RLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQANHLLHYISR 75 +LD Q HAALAR SLS +GLLA +DWA HLAVSPGK ++L LAL+Q+ L Y Sbjct: 13 QLDTQFHAALARRFFSLSPAAGLLAASDWALHLAVSPGKCMDLARLALRQSEELAGYARE 72 Query: 76 SSSSDPDSPSML-----PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAATRDVWGVEK 130 ++ D P M P DRRF+ P+WQ+WPFN HQSFLL +QWWAAAT V GVEK Sbjct: 73 RMTAGAD-PQMRHGVQPPAQDRRFAAPEWQQWPFNYMHQSFLLTQQWWAAATHGVKGVEK 131 Query: 131 HHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDMIGLLLEKP 190 HH ++VAFAARQ LDVFSP NQL TNP VL+ T++Q GANLL G N +D+ L KP Sbjct: 132 HHENVVAFAARQLLDVFSPGNQLATNPVVLQRTLQQGGANLLRGALNAADDLQRLAAGKP 191 Query: 191 ASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWIMKYYILDLS 250 + F+ GRDVAV+PGKVVLRNR++ELI+YAP TE V PEP+L++PAWIMKYYILDLS Sbjct: 192 PAGTEDFVVGRDVAVTPGKVVLRNRLVELIQYAPTTEAVRPEPILIVPAWIMKYYILDLS 251 Query: 251 PANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSACPDRKVHGV 310 P NSLIRYLV++GHTVFC+SWKNP DRDL MDDYL GFHAALDAVN+ P RKVH Sbjct: 252 PHNSLIRYLVDQGHTVFCLSWKNPGYEDRDLGMDDYLKLGFHAALDAVNAIVPKRKVHAT 311 Query: 311 GYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQISLLEAQMQQ 370 GYCLGGTLL+IAAAAMARDGD RLASL+L AAQTDF+EPGELGLFIDESQ++LLEAQM Q Sbjct: 312 GYCLGGTLLAIAAAAMARDGDARLASLSLFAAQTDFSEPGELGLFIDESQVNLLEAQMTQ 371 Query: 371 AGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMPALMHSQYL 430 G L SQMA AFQMLRSYDLLWSR++ +YL+G +DLM WNADATRMPA MH+QYL Sbjct: 372 TGYLKASQMAGAFQMLRSYDLLWSRLVNEYLLGERTPMNDLMAWNADATRMPARMHAQYL 431 Query: 431 RRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHSLCPAEITFV 490 RRLFLDDDLS GRY GKPV L+D+ LP F+VGT+ DHVAPWRSV+KLH L AEITF Sbjct: 432 RRLFLDDDLSRGRYPAGGKPVALSDLTLPTFMVGTLTDHVAPWRSVHKLHYLTTAEITFA 491 Query: 491 LASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWPAWADWLAQR 550 L +GGHNAGIV+PPGH R QI TR AG SY + D+W+A + GSWWPAW WL R Sbjct: 492 LTNGGHNAGIVNPPGHPRRHHQILTRPAGGSYMAPDDWLAAAADVPGSWWPAWVQWLQAR 551 Query: 551 SGTPVPAAGMGYDKAHSLADAPGNYIMEQ 579 SG PV +G ++ADAPG+Y++E+ Sbjct: 552 SGAPVAPPHVGARGYKAIADAPGSYVLEK 580 >ref|YP_159900.1| putative poly-beta-hydroxyalkanoate synthase [Aromatoleum aromaticum EbN1] emb|CAI08999.1| putative poly-beta-hydroxyalkanoate synthase [Aromatoleum aromaticum EbN1] Length = 595 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/580 (62%), Positives = 433/580 (74%), Gaps = 9/580 (1%) Query: 9 IPVAPTVR---LDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQ 65 IP +P+ LD ++HAALARA+ S+S +S LLA DWA HLA SPGKRLEL+ LAL+Q Sbjct: 16 IPESPSSSRNPLDIKVHAALARATSSISPMSLLLASIDWAGHLAGSPGKRLELVNLALEQ 75 Query: 66 ANHLLHYISRSSSSDPDSPSML----PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAA 121 L+ YI + + P SP+ P DRRF +W WPFNL HQSFLLA++WW AA Sbjct: 76 NRRLVRYIRELALALPASPAHECIEPPARDRRFIADEWHHWPFNLMHQSFLLADEWWQAA 135 Query: 122 TRDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMND 181 TR V GV +HH ++V+F ARQ LDVFSP N L TNP VL+ T EQ G NL G+ N ++D Sbjct: 136 TRGVPGVSRHHENVVSFTARQSLDVFSPGNYLATNPLVLKRTTEQGGTNLWRGLVNALDD 195 Query: 182 MIGLLLEKPASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWI 241 + + P + A F+ GRDVAV+PGKVVL+NR++ELI+Y+P TE V+PEP+L++PAWI Sbjct: 196 LERVATGHPPAGAEDFVVGRDVAVTPGKVVLKNRLIELIQYSPTTEKVHPEPVLIVPAWI 255 Query: 242 MKYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSA 301 MKYYILDLSP NSL++YLV++GHTVFC+SWKNP + DL M+DY+ SGFHAAL AVN+ Sbjct: 256 MKYYILDLSPHNSLVKYLVDQGHTVFCISWKNPGAEESDLDMEDYVQSGFHAALTAVNAI 315 Query: 302 CPDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQI 361 PDRKVH GYCLGGTLLSIA AAMARDGD+RLAS+TL AAQTDFTEPGEL LFIDESQ+ Sbjct: 316 VPDRKVHAAGYCLGGTLLSIANAAMARDGDERLASMTLFAAQTDFTEPGELALFIDESQV 375 Query: 362 SLLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRM 421 SLLEAQM + G L+ QMA AFQ+LRSYDLLWSR++ +YLMG A +DLM WNADATRM Sbjct: 376 SLLEAQMAETGYLTAGQMAGAFQLLRSYDLLWSRMVGEYLMGERAPMNDLMAWNADATRM 435 Query: 422 PALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHS 481 PA MH+QYLR LFL+DDLSEGRY V GKPV L+D++ P+F VGTV DHVAPWRSVYKLH Sbjct: 436 PARMHTQYLRLLFLNDDLSEGRYPVGGKPVALSDIDTPIFCVGTVTDHVAPWRSVYKLHY 495 Query: 482 LCPAEITFVLASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWP 541 L PAEITFVL SGGHNAGI+S PG +R FQI R G +Y S D W+A GSWWP Sbjct: 496 LTPAEITFVLTSGGHNAGIISEPGRARRHFQILERREGGNYVSPDHWLAVAPEHEGSWWP 555 Query: 542 AWADWLAQRSGTPV--PAAGMGYDKAHSLADAPGNYIMEQ 579 W WL RS PV PA G +L DAPG Y+ E+ Sbjct: 556 EWVAWLKARSAAPVAPPALGAPQSGYPALDDAPGQYVREK 595 >ref|YP_001892836.1| Poly-beta-hydroxybutyrate polymerase domain protein [Ralstonia pickettii 12J] ref|YP_002984337.1| poly-beta-hydroxybutyrate polymerase domain-containing protein [Ralstonia pickettii 12D] gb|ACD29409.1| Poly-beta-hydroxybutyrate polymerase domain protein [Ralstonia pickettii 12J] gb|ACS65665.1| Poly-beta-hydroxybutyrate polymerase domain protein [Ralstonia pickettii 12D] Length = 582 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/582 (63%), Positives = 436/582 (74%), Gaps = 6/582 (1%) Query: 4 LQEAAIPVAPTV-RLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLA 62 ++ A +P +PT ++D HAALARAS SLS+ S LA+ DWA HLA SPGKRL+L LA Sbjct: 1 MRTAPVPSSPTAEQIDLPFHAALARASNSLSIASMQLALFDWALHLAGSPGKRLDLWRLA 60 Query: 63 LQQANHLLHYISRSSSSDPDSPSML---PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWA 119 L QA L YI +S P + + P DRRF+ +W+ WPFN+ HQSFLL EQWW Sbjct: 61 LTQAQQLEGYIRNCMASGPQNACLCVQPPARDRRFAADEWRLWPFNVLHQSFLLTEQWWE 120 Query: 120 AATRDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCM 179 AATR VWGV KHH D+VAFAARQ LD+ SP NQL TNP VLR T EQ G NL+ G N + Sbjct: 121 AATRGVWGVAKHHEDVVAFAARQWLDMMSPGNQLATNPIVLRRTFEQHGTNLVRGALNAL 180 Query: 180 NDMIGLLLEKPASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPA 239 +D+ + PA+ FM GRDVA++PGKVVLRNR++ELI+YAPAT V EP+L++PA Sbjct: 181 DDLERSMSGAPAAGTERFMVGRDVAITPGKVVLRNRLIELIQYAPATGKVQAEPILIVPA 240 Query: 240 WIMKYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVN 299 WIMKYYILDLSP NSLIRYLVE+GHTVFC+SWKNP ADR L MDDYL G AALDAVN Sbjct: 241 WIMKYYILDLSPQNSLIRYLVEQGHTVFCISWKNPDEADRALDMDDYLKLGVFAALDAVN 300 Query: 300 SACPDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDES 359 + P ++VH GYCLGGTLL+IAAAAMARDGD RLAS+TL AAQTDF EPGELGLFIDE+ Sbjct: 301 AIVPGQRVHAAGYCLGGTLLAIAAAAMARDGDARLASMTLFAAQTDFCEPGELGLFIDEA 360 Query: 360 QISLLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADAT 419 Q+SLLEAQM+Q G L SQMA AFQMLRSYDLLWSR++ +YL+G A +DLM WNADAT Sbjct: 361 QVSLLEAQMEQTGYLRASQMAGAFQMLRSYDLLWSRLVGEYLLGDRAPMNDLMAWNADAT 420 Query: 420 RMPALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKL 479 RMPA MHSQYLR LFL+DDLSEG Y V+GKPV L +++LP+F+VGT+ DHVAPWRSVYKL Sbjct: 421 RMPARMHSQYLRHLFLNDDLSEGHYPVNGKPVALNEIDLPIFVVGTLTDHVAPWRSVYKL 480 Query: 480 HSLCPAEITFVLASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSW 539 H L AE+TFVL SGGHNAGIVSPP +S +FQ+ TR G + D+W+A T GSW Sbjct: 481 HHLTEAELTFVLTSGGHNAGIVSPPTNSHRRFQMQTRHTGETSAGPDDWLASAPATDGSW 540 Query: 540 WPAWADWL-AQRSGTP-VPAAGMGYDKAHSLADAPGNYIMEQ 579 WPAW WL A SG+ V MG LADAPG Y++E+ Sbjct: 541 WPAWHAWLVAHASGSALVKPPKMGVPGLPPLADAPGTYVLEK 582 >ref|ZP_07673442.1| poly(3-hydroxyalkanoate) polymerase family protein [Ralstonia sp. 5_7_47FAA] gb|EFP68200.1| poly(3-hydroxyalkanoate) polymerase family protein [Ralstonia sp. 5_7_47FAA] Length = 582 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/582 (63%), Positives = 436/582 (74%), Gaps = 6/582 (1%) Query: 4 LQEAAIPVAPTVRL-DRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLA 62 ++ A +P +PT L D HAALARAS SLSL S LA+ DWA HL+VSPGK+L+L LA Sbjct: 1 MRAAPVPSSPTADLIDLPFHAALARASNSLSLASMQLALLDWALHLSVSPGKQLDLCRLA 60 Query: 63 LQQANHLLHYISRSSSSDPDSPSML---PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWA 119 L QA L YI +S P + + P DRRFS +W+ WPFN+ QSFLL EQWW Sbjct: 61 LTQAQQLEGYIRNCMASGPQNVCLCVQPPAHDRRFSADEWRLWPFNVLQQSFLLTEQWWD 120 Query: 120 AATRDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCM 179 AATR VWGV KHH D+VAFAARQ LD+ SP NQ+ TNP VLR T EQRG NL+ G N + Sbjct: 121 AATRGVWGVAKHHEDVVAFAARQWLDMMSPGNQMATNPIVLRQTFEQRGTNLVRGALNAL 180 Query: 180 NDMIGLLLEKPASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPA 239 +D+ + PA+ F+ GRDVA++PGKVVLRNR++ELI+YAPAT V EP+L++PA Sbjct: 181 DDLERSMSGAPAAGTERFVVGRDVAITPGKVVLRNRLIELIQYAPATGKVQAEPILIVPA 240 Query: 240 WIMKYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVN 299 WIMKYYILDLSP NSLIRYLVE+GHTVFC+SWKNP ADR L MDDYL G AALDAVN Sbjct: 241 WIMKYYILDLSPENSLIRYLVEQGHTVFCISWKNPDEADRALDMDDYLKLGVFAALDAVN 300 Query: 300 SACPDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDES 359 + P ++VH GYCLGGTLL+IAAAAMARDGD RLAS+TL AAQTDF EPGELGLFIDE+ Sbjct: 301 AIVPGQRVHAAGYCLGGTLLAIAAAAMARDGDARLASMTLFAAQTDFCEPGELGLFIDEA 360 Query: 360 QISLLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADAT 419 Q+SLLEAQM+Q G L SQMA AFQMLRSYDLLWSR++ +YL+G A +DLM WNADAT Sbjct: 361 QVSLLEAQMEQTGYLRASQMAGAFQMLRSYDLLWSRLVGEYLLGDRAPMNDLMAWNADAT 420 Query: 420 RMPALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKL 479 RMPA MHSQYLR LFL+DDLSEG Y V+GKPV L +++LP+F+VGT+ DHVAPWRSVYKL Sbjct: 421 RMPARMHSQYLRHLFLNDDLSEGHYPVNGKPVALNEIDLPIFVVGTLTDHVAPWRSVYKL 480 Query: 480 HSLCPAEITFVLASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSW 539 H L AE+TFVL SGGHNAGIVSPP +S +FQ+ TR G + D+W+A T GSW Sbjct: 481 HHLTEAELTFVLTSGGHNAGIVSPPANSHRRFQLQTRHTGEKSAAPDDWLASAPATDGSW 540 Query: 540 WPAWADWL-AQRSG-TPVPAAGMGYDKAHSLADAPGNYIMEQ 579 WPAW WL A SG T V MG LA+APG Y++E+ Sbjct: 541 WPAWHAWLVAHASGSTAVNPPSMGTPGLPPLAEAPGTYVLEK 582 >ref|YP_004390235.1| poly-beta-hydroxybutyrate polymerase domain-containing protein [Alicycliphilus denitrificans K601] gb|AEB86719.1| Poly-beta-hydroxybutyrate polymerase domain protein [Alicycliphilus denitrificans K601] Length = 580 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/568 (64%), Positives = 434/568 (76%), Gaps = 4/568 (0%) Query: 16 RLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQANHLLHYISR 75 +LD Q HAALAR SLS +G+LA +DWA HLAVSPGK + L LAL+Q+ L Y Sbjct: 13 QLDTQFHAALARRFFSLSPAAGMLAASDWALHLAVSPGKCMALARLALRQSEELAGYARE 72 Query: 76 --SSSSDPDSPSML--PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAATRDVWGVEKH 131 ++ +DP + P DRRF+ P+WQ+WPFN HQSFLL +QWWAAAT V GVEKH Sbjct: 73 RMTAGADPQLRHGVQPPAQDRRFAAPEWQQWPFNYMHQSFLLTQQWWAAATHGVKGVEKH 132 Query: 132 HADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDMIGLLLEKPA 191 H ++VAFAARQ LDVFSP NQL TNP VL+ T++Q GANLL G N +D+ L KP Sbjct: 133 HENVVAFAARQLLDVFSPGNQLATNPVVLQRTLQQGGANLLRGALNAADDLQRLAAGKPP 192 Query: 192 SAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWIMKYYILDLSP 251 + F+ GRDVAV+PGKVVLRNR++ELI+Y P TE V+PEP+L++PAWIMKYYILDLSP Sbjct: 193 AGTEDFVVGRDVAVTPGKVVLRNRLVELIQYTPTTEAVHPEPVLIVPAWIMKYYILDLSP 252 Query: 252 ANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSACPDRKVHGVG 311 NSLIRYLV++GHTVFC+SWKNP DRDL +DDYL GFHAALDAVN+ P RKVH G Sbjct: 253 HNSLIRYLVDQGHTVFCLSWKNPGYEDRDLGLDDYLKLGFHAALDAVNAIVPKRKVHATG 312 Query: 312 YCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQISLLEAQMQQA 371 YCLGGTLL+IAAAAMARDGD RLASL+L AAQTDF+EPGELGLFIDESQ++LLEAQM Q Sbjct: 313 YCLGGTLLAIAAAAMARDGDARLASLSLFAAQTDFSEPGELGLFIDESQVNLLEAQMTQT 372 Query: 372 GTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMPALMHSQYLR 431 G L SQMA AFQMLRSYDLLWSR++ +YL+G +DLM WNADATRMPA MH+QYLR Sbjct: 373 GYLKASQMAGAFQMLRSYDLLWSRLVNEYLLGERTPMNDLMAWNADATRMPARMHAQYLR 432 Query: 432 RLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHSLCPAEITFVL 491 RL LDDDLS GRY V GKPV L+D+ LP+F+VGT+ DHVAPWRSV+KLH L EITF L Sbjct: 433 RLLLDDDLSRGRYPVGGKPVSLSDITLPIFMVGTLTDHVAPWRSVHKLHHLTTTEITFAL 492 Query: 492 ASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWPAWADWLAQRS 551 SGGHNAGIV+PPG+ R +Q+ TR AG +Y + D+W+A GSWWPAW +WL RS Sbjct: 493 TSGGHNAGIVNPPGNPRRHYQLRTRPAGGNYMAPDDWLAAAPAAQGSWWPAWQEWLQARS 552 Query: 552 GTPVPAAGMGYDKAHSLADAPGNYIMEQ 579 G PV MG + ADAPG+Y++E+ Sbjct: 553 GKPVAPPHMGARGYKAGADAPGHYVLEK 580 >ref|YP_003748213.1| poly-beta-hydroxybutyrate (PHB) polymerase / polyhydroxyalkanoic acid (PHA) synthase [Ralstonia solanacearum CFBP2957] emb|CBJ53821.1| poly-beta-hydroxybutyrate (PHB) polymerase / polyhydroxyalkanoic acid (PHA) synthase [Ralstonia solanacearum CFBP2957] Length = 926 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/579 (63%), Positives = 441/579 (76%), Gaps = 5/579 (0%) Query: 6 EAAIPVAPTVRLDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQ 65 E+A A ++D +HAA+AR + SLS VS LLA+ DWA HLA+SPGKRL+L+ LAL Q Sbjct: 348 ESAPSSAAVEQIDVPLHAAIARTTFSLSRVSLLLALLDWAWHLALSPGKRLQLVQLALDQ 407 Query: 66 ANHLLHYISRSSSSDP---DSPSMLPVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAAT 122 A Y++ +++P + P DRRFS +W+ WPFN+WHQ+FLL EQWW AAT Sbjct: 408 AAQFTRYLNDCLTANPLEARCCVLPPAHDRRFSAEEWRMWPFNIWHQAFLLTEQWWDAAT 467 Query: 123 RDVWGVEKHHADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDM 182 VWGV++HH D+VAFAARQ LD SP NQLL NP VLR T +QRGANL+ G N + D+ Sbjct: 468 HGVWGVDRHHEDVVAFAARQLLDTLSPGNQLLGNPVVLRRTFDQRGANLVRGALNALEDL 527 Query: 183 IGLLLEKPASAARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWIM 242 +L + PA+ + F+ GRDVAV+PGKVVLRNR++ELI+YAPAT +V EP+L++PAWIM Sbjct: 528 ERVLSDAPAAGSGHFVIGRDVAVTPGKVVLRNRLIELIQYAPATPSVRAEPILIVPAWIM 587 Query: 243 KYYILDLSPANSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSAC 302 KYYILDLSP +SLIRYLV++GHTVFC+SWKNP ADRDL MDDYL GF AAL AV + Sbjct: 588 KYYILDLSPHDSLIRYLVDRGHTVFCISWKNPGQADRDLDMDDYLQLGFVAALQAVGTIV 647 Query: 303 PDRKVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQIS 362 P R+VH GYCLGGTLL+IAAAAMARDGD RLAS+TLLAAQTDF+EPGELGLFIDE+Q+S Sbjct: 648 PGRRVHACGYCLGGTLLAIAAAAMARDGDHRLASMTLLAAQTDFSEPGELGLFIDEAQVS 707 Query: 363 LLEAQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMP 422 LLEAQM + G L SQMA AFQMLRSYDLLWSR++ +YLMG A SDLM WNADATR+P Sbjct: 708 LLEAQMAETGYLRASQMAGAFQMLRSYDLLWSRMVGEYLMGNRASVSDLMAWNADATRLP 767 Query: 423 ALMHSQYLRRLFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHSL 482 A MHSQYLRRLFL++DLSEGRY VDGKPVLL+ +++P+F+VGTV DHVAPWRSVYKLH L Sbjct: 768 ARMHSQYLRRLFLNNDLSEGRYPVDGKPVLLSGIDVPIFMVGTVTDHVAPWRSVYKLHRL 827 Query: 483 CPAEITFVLASGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWPA 542 AE+TFVL SGGHNAGIV+PP QFQ+ TR G + DEW+A +T GSWWPA Sbjct: 828 AEAELTFVLTSGGHNAGIVNPPEQPGRQFQMLTRRRGDAPVLPDEWLASAPMTAGSWWPA 887 Query: 543 WADW-LAQRSGTPVPAAGMGYDKAH-SLADAPGNYIMEQ 579 W +W LA S P +LADAPG Y+ME+ Sbjct: 888 WHEWLLAHASDAPEAPPPPMGTPPFAALADAPGTYVMEK 926 >ref|YP_002354804.1| poly-beta-hydroxybutyrate polymerase domain-containing protein [Thauera sp. MZ1T] gb|ACK53908.1| Poly-beta-hydroxybutyrate polymerase domain protein [Thauera sp. MZ1T] Length = 648 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/567 (61%), Positives = 417/567 (73%), Gaps = 4/567 (0%) Query: 17 LDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQANHLLHYISRS 76 LDR++HAA+ARA+ S+S ++ LLA DWA HLAVSPGKR+EL LA+ Q LL Y + Sbjct: 82 LDRRVHAAIARATASVSPIALLLATVDWAGHLAVSPGKRMELADLAIVQTRRLLRYAQQL 141 Query: 77 SSSDPDSPSML----PVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAATRDVWGVEKHH 132 + + S + P DRRF P+W WPFNL HQSFLL ++WW AAT V GV +HH Sbjct: 142 ALAPAGSAAHECIEPPAQDRRFQAPEWHAWPFNLMHQSFLLGQEWWDAATHGVAGVSRHH 201 Query: 133 ADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDMIGLLLEKPAS 192 +VAFAARQ LD+FSP N L TNP VLR T+ G NL G + + D L+ P + Sbjct: 202 EQVVAFAARQLLDLFSPGNFLPTNPVVLRQTLASGGMNLARGTIHAIEDFERLVSGAPPA 261 Query: 193 AARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWIMKYYILDLSPA 252 F+ GRDVAV+ GKVVLRNR++ELI+YAPAT VY EP+L++PAWIMKYYILDLSP Sbjct: 262 GTEDFVVGRDVAVTAGKVVLRNRLVELIQYAPATADVYAEPVLIVPAWIMKYYILDLSPH 321 Query: 253 NSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSACPDRKVHGVGY 312 NSL++YLVE+GHTVFC+SWKNP +R+L MDDYL GF AALDA+N+ P +KVH GY Sbjct: 322 NSLVKYLVERGHTVFCISWKNPGTEERELDMDDYLQLGFFAALDAINAIVPGQKVHATGY 381 Query: 313 CLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQISLLEAQMQQAG 372 CLGGTLL+IAAAAM RDGD RL S+TL AQTDFTEPGEL LFID+S++SLLEAQM++ G Sbjct: 382 CLGGTLLAIAAAAMDRDGDARLGSMTLFTAQTDFTEPGELALFIDDSEVSLLEAQMEETG 441 Query: 373 TLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMPALMHSQYLRR 432 L+ QMA AFQ+LRS DLLWSRV+ +YLMG +DLM WNADATRMPA MHSQYLRR Sbjct: 442 FLTAGQMAGAFQILRSNDLLWSRVVGEYLMGERTPMNDLMAWNADATRMPARMHSQYLRR 501 Query: 433 LFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHSLCPAEITFVLA 492 LFL+DDLSEGRY V GKPV L+D+ LPVF V T+ DHVAPWRSVYKLH L P EI+FVL Sbjct: 502 LFLNDDLSEGRYPVGGKPVALSDIELPVFCVATLTDHVAPWRSVYKLHYLVPTEISFVLT 561 Query: 493 SGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWPAWADWLAQRSG 552 SGGHNAGIVS PG R F++ TR AG +Y D+W+ T GSWWPAW+DWLA RSG Sbjct: 562 SGGHNAGIVSEPGRPRRSFRMHTRPAGGNYVPPDDWLERTPEQEGSWWPAWSDWLAARSG 621 Query: 553 TPVPAAGMGYDKAHSLADAPGNYIMEQ 579 V +G +L DAPG Y+ E+ Sbjct: 622 ARVAPPAIGAPDYPALDDAPGCYVHEK 648 >ref|YP_001414712.1| poly-beta-hydroxybutyrate polymerase domain-containing protein [Parvibaculum lavamentivorans DS-1] gb|ABS65055.1| Poly-beta-hydroxybutyrate polymerase domain protein [Parvibaculum lavamentivorans DS-1] Length = 583 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/566 (57%), Positives = 409/566 (72%), Gaps = 7/566 (1%) Query: 17 LDRQIHAALARASGSLSLVSGLLAVTDWAAHLAVSPGKRLELLCLALQQANHLLHYISRS 76 LD Q H A A+A S+S S LLA TDWA+HLA SPGK+ ELL A + + + +S Sbjct: 17 LDMQAHMAWAQAWSSISPESSLLAWTDWASHLANSPGKQSELLAFAGSLSEQWMSLLKKS 76 Query: 77 SSSDPD----SPSMLPVADRRFSNPDWQRWPFNLWHQSFLLAEQWWAAATRDVWGVEKHH 132 S PD SP P DRRF++P W +WP+NL+ SFL+ +WW AT+ VWGV+ H Sbjct: 77 LVS-PDQEVASPEPSPTNDRRFNDPAWDQWPYNLFRSSFLIQSKWWEQATQGVWGVDPQH 135 Query: 133 ADLVAFAARQCLDVFSPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDMIGLLLEKPAS 192 L+AF A+Q L++ SP+N L NP VL+ T+E++GANL GM N ++D+ L +P + Sbjct: 136 ERLLAFGAKQWLEMVSPTNSALFNPVVLKKTIEEQGANLARGMSNFLDDLRRQLSGEPPA 195 Query: 193 AARTFMPGRDVAVSPGKVVLRNRIMELIRYAPATETVYPEPLLLIPAWIMKYYILDLSPA 252 F+ GRDVAV+ GKVVLRN+++ELI+Y P TE V+PEP+L+IPAWIMKYY+LDLSP Sbjct: 196 GTENFVVGRDVAVTEGKVVLRNQLIELIQYTPTTEKVHPEPILIIPAWIMKYYVLDLSPH 255 Query: 253 NSLIRYLVEKGHTVFCVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSACPDRKVHGVGY 312 NSLIRYLV +GHTVFC+SWKNP DRDL MD+YL+ G AALDAV S P++ +H GY Sbjct: 256 NSLIRYLVAQGHTVFCISWKNPDAGDRDLGMDEYLEFGLRAALDAVTSIVPEQGIHAAGY 315 Query: 313 CLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQISLLEAQMQQAG 372 CLGGTLL+I A+AMARDGD RL S++LLAAQTDF+EPGEL LFI+ESQ++LLEA M Q G Sbjct: 316 CLGGTLLAIGASAMARDGDTRLVSVSLLAAQTDFSEPGELSLFINESQVALLEASMAQTG 375 Query: 373 TLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMPALMHSQYLRR 432 L+ QM+ AFQ+LRSYDL+WSR+I +YL+G +DLM WNAD TR+PA MHSQYLRR Sbjct: 376 YLTSDQMSGAFQLLRSYDLIWSRMIDEYLLGDRRPMTDLMAWNADGTRLPAKMHSQYLRR 435 Query: 433 LFLDDDLSEGRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYKLHSLCPAEITFVLA 492 L+L++DLS GRY V G+PV + D+ +PVF VGT DH+APWRSVYKLH L AE+TFVL Sbjct: 436 LYLNNDLSAGRYPVTGRPVSVGDIAVPVFCVGTASDHIAPWRSVYKLHLLSSAELTFVLT 495 Query: 493 SGGHNAGIVSPPGHSRSQFQISTRAAGASYRSADEWMAGTSVTTGSWWPAWADWLAQRSG 552 +GGHN GIVS PG + Q+QI TRAAG Y + DEW A SWWPAW+ WL +RSG Sbjct: 496 TGGHNGGIVSEPGRGKRQYQIHTRAAGDGYMAPDEWQATAQTHLDSWWPAWSAWLRERSG 555 Query: 553 TPVPAAGMGYDKAH--SLADAPGNYI 576 V MG + ++ DAPG Y+ Sbjct: 556 EGVAPPLMGAESRGYPTICDAPGKYV 581