BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0213.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775822.1| LuxR family transcription regulator protein ... 513 e-144 ref|YP_004157635.1| LuxR family transcriptional regulator [Vario... 200 2e-49 ref|ZP_07657877.1| LuxR family transcriptional regulator [Roseib... 180 2e-43 ref|YP_166729.1| LuxR family transcriptional regulator [Ruegeria... 178 8e-43 ref|YP_002546734.1| transcriptional regulatory protein [Agrobact... 177 9e-43 ref|NP_773054.1| transcriptional regulator [Bradyrhizobium japon... 169 5e-40 ref|YP_366731.1| LuxR family transcriptional regulator [Burkhold... 159 4e-37 ref|ZP_01549812.1| transcriptional regulatory protein [Stappia a... 158 8e-37 ref|YP_001713676.1| LuxR family transcriptional regulator [Acine... 154 1e-35 ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calc... 154 2e-35 >ref|YP_003775822.1| LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63914.1| LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/249 (99%), Positives = 248/249 (99%) Query: 1 VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTV 60 VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDD NHRFGNTV Sbjct: 4 VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDDNHRFGNTV 63 Query: 61 SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC 120 SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC Sbjct: 64 SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC 123 Query: 121 FGVNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS 180 FGVNMFAYDGDRNIGD+RIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS Sbjct: 124 FGVNMFAYDGDRNIGDIRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS 183 Query: 181 PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT 240 PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT Sbjct: 184 PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT 243 Query: 241 QLVKRLIDG 249 QLVKRLIDG Sbjct: 244 QLVKRLIDG 252 >ref|YP_004157635.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU39524.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 245 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 107/243 (44%), Positives = 146/243 (60%), Gaps = 3/243 (1%) Query: 1 VYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTV 60 +Y++ + + L + L +VR+ + LL LL AD FAS+ W+ + RF V Sbjct: 1 MYLTGSEQQALRGVFTLLAQERGESDVRERLGWALLDLLHADQFASFVWNAESGRFDGRV 60 Query: 61 SVNMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLC 120 ++NMDPANL Y ++Q+ DPITF LQ T VT VMP +L +TEFF DFL+RDGL Sbjct: 61 ALNMDPANLDRYGEWHQHHDPITFVLQSHRRATRVTDVMPQRELMQTEFFTDFLSRDGLH 120 Query: 121 FGVNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAAS 180 +G+N+ A++G R +GDLRIWR R +F LL LI PAF ALQRA+ AAA Sbjct: 121 WGMNLHAFEGSRALGDLRIWRRKGRGDFGEHEKALLDLIEPAFIGALQRAQ---RTAAAV 177 Query: 181 PDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRT 240 P + LS RE +A+ +C GL+DKEIAR + + TVRT++ RIF KL + R+ Sbjct: 178 PMPAGTASWDDLSAREQEVARAVCEGLTDKEIARRMAVSVPTVRTYLRRIFDKLGIERRS 237 Query: 241 QLV 243 L Sbjct: 238 ALA 240 >ref|ZP_07657877.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gb|EFO33381.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 278 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/251 (41%), Positives = 142/251 (56%), Gaps = 3/251 (1%) Query: 3 ISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSV 62 +S + L IM L ++S+E+R V RLL LL+AD+FASY D + F + VSV Sbjct: 26 LSSRETSELIGIMQDLTRLSNSLELRQRVGERLLGLLNADFFASYVADTSGRGFASRVSV 85 Query: 63 NMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFG 122 NM P NL YE Y+QY DPIT +L V +V+ L +TEF+NDFL RDGL G Sbjct: 86 NMAPDNLKLYETYFQYRDPITQKLASRRQAAHVNEVIAQSDLEKTEFYNDFLQRDGLHHG 145 Query: 123 VNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLAL-QRARAHCSAAAASP 181 VN A+DG ++GDLR+WRS +E F R + +L + AF+ AL Q R + P Sbjct: 146 VNYHAHDGSVHVGDLRVWRSRAKETFGRREIDILQAVGTAFSNALIQHRRFAENLRQLDP 205 Query: 182 --DAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNR 239 +L L+ RE+ + C+ D+ IA L + +TVRTHI R+F+K V NR Sbjct: 206 LHTLESLAEALSLTPREAEILSCMTHYGRDQHIADHLGVSITTVRTHIQRLFQKAGVNNR 265 Query: 240 TQLVKRLIDGR 250 T LV +L+ R Sbjct: 266 TALVAKLMAAR 276 >ref|YP_166729.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gb|AAV94775.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 238 Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 26 EVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSVNMDPANLANYERYYQYCDPITFE 85 EVR V +LL LL ADYFASY WD +F + V +NM NL YE Y+Q+ DPIT Sbjct: 12 EVRRRVGQKLLDLLKADYFASYVWDSDAQQFVSCVQINMTDDNLRRYESYFQFHDPITPT 71 Query: 86 LQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFGVNMFAYDGDRNIGDLRIWRSARR 145 LQR T V++VM ++L +TEFFNDFL +DGLC+G+N FAYD NIGDLRIWR A R Sbjct: 72 LQRRKKATPVSEVMRHDRLVKTEFFNDFLKQDGLCYGMNYFAYDRGDNIGDLRIWRGAHR 131 Query: 146 ENFDRDALKLLALIRPAFTLALQRARAHCSAAAASPDAGALLTPTPLSERESHLAQCICR 205 E+F + + + P+ AL RAR+ S + + RE+ ++ + Sbjct: 132 EDFTPRDAQFVDAVGPSLVNALIRARS-AKEQVPSLRFAQIADDLGFTSREAEVSDLLVT 190 Query: 206 GLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQLVKRLID 248 GL+D+EI +L T+R+HI IF+K + R+QL + L + Sbjct: 191 GLTDEEICTKLGFSKPTLRSHIASIFRKSGLNRRSQLAQFLAE 233 >ref|YP_002546734.1| transcriptional regulatory protein [Agrobacterium radiobacter K84] gb|ACM31270.1| transcriptional regulatory protein [Agrobacterium radiobacter K84] Length = 247 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 138/241 (57%), Gaps = 15/241 (6%) Query: 3 ISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSV 62 ++ E+L+L I+ L+ ++ VE R V ++KL+ AD+ ASY W+D RF + Sbjct: 8 VTSEELRLFGDIVARLSRLDNDVEARTAVFEDIVKLVRADFAASYIWNDRLRRFEKGLIH 67 Query: 63 NMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFG 122 NMDP N+ NYERYYQ+ DP TF+L+ TL+ +V P +L RTEF+NDFL RDGL G Sbjct: 68 NMDPENIRNYERYYQFRDPHTFKLREKRKATLIEEVNPYNELIRTEFYNDFLKRDGLHHG 127 Query: 123 VNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAASPD 182 +N+F ++GDR++GD R+WRSA+ +F LL I P A+ Sbjct: 128 INVFLFEGDRDLGDFRLWRSAKSPDFSEREKMLLDTISPFLKKAM--------------- 172 Query: 183 AGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQL 242 A + L+ RE +A + RG D+EI L+I FSTVRTH+ + +K NR +L Sbjct: 173 ANGMERFENLTPRERQIAFLVARGCRDREICDMLNIGFSTVRTHLNKAMEKKGCSNRAEL 232 Query: 243 V 243 Sbjct: 233 A 233 >ref|NP_773054.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51679.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 137/240 (57%), Gaps = 15/240 (6%) Query: 3 ISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSV 62 I + LKL I+ L + ++R + LL+LL AD+ ASY W + F + VS+ Sbjct: 7 IVSQDLKLFGDIVVRLQRMDPGADLRQSILPDLLRLLRADFVASYVWRSESANFQHGVSL 66 Query: 63 NMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFG 122 NMDP NL Y+ ++Q+ DP+T +L+ + V +V+ + RTEF+NDFLARDGL G Sbjct: 67 NMDPQNLKRYDDWFQFHDPMTAKLRLRRRASFVEEVLSRRDMIRTEFYNDFLARDGLHHG 126 Query: 123 VNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAASPD 182 +NM+ +DGDR++GD RIWR+A R +F+ + LL + P A+ R Sbjct: 127 INMYVFDGDRDLGDFRIWRAAGRPDFESREIDLLTGLEPFLRGAMLR------------- 173 Query: 183 AGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQL 242 + L+ RES +A + RG +D++I+R L+I F+TVRTHI +K NR +L Sbjct: 174 --GMHRYEDLTARESDVANLVARGCTDRDISRLLNIGFATVRTHINNAMRKRCCANRAEL 231 >ref|YP_366731.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gb|ABB06087.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 237 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 139/245 (56%), Gaps = 17/245 (6%) Query: 3 ISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSV 62 I+ E+L+L I+ L V+VR V + +LL AD+ AS+ D+ + N S Sbjct: 8 ITPEELRLFGDIVARLEELGPVVDVRTVVLPAITQLLRADFAASFDCDEQTGLWRNGFSY 67 Query: 63 NMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFG 122 N+DP +A YE ++Q+ DP+T +L+ V T V V+ +L +TEF+NDFL RDG+ G Sbjct: 68 NVDPLQIARYEAWFQHVDPVTSQLRARRVATCVDDVVNRRELEQTEFYNDFLCRDGMHHG 127 Query: 123 VNMFAYDGDRNIGDLRIWRSARRENF-DRDALKLLALIRPAFTLALQRARAHCSAAAASP 181 +N++A+DG ++GDLRIWR+ R +F RD L LL I P F AL R R C+ Sbjct: 128 INVYAFDGATHVGDLRIWRAKGRPDFTGRDKL-LLNGIEPFFRRALLRRRHACAG----- 181 Query: 182 DAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQ 241 L+ERES +A+ + G +DK++AR L I TVRTH+ R+ K V NR Sbjct: 182 ----------LTERESDVARLVAAGYTDKDVARTLGIGVPTVRTHLRRVMAKKGVANRAS 231 Query: 242 LVKRL 246 L L Sbjct: 232 LAAAL 236 >ref|ZP_01549812.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gb|EAV41727.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 241 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 131/240 (54%), Gaps = 15/240 (6%) Query: 3 ISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSV 62 +S ++ +LL I+ L + S +VR V +L LL AD AS+ WD +GN ++ Sbjct: 8 MSSQETRLLAGIISTL-SVGGSQDVRTEVFPDILMLLRADVLASFEWDPRAGSYGNPFTI 66 Query: 63 NMDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFG 122 N DP N+ Y +YQ+ DP+T +L+ L V +V+ LR+TEF+NDFLARDG+ G Sbjct: 67 NQDPDNIERYRNWYQFRDPMTEKLRGLRRAAHVEEVISKPDLRKTEFYNDFLARDGMHHG 126 Query: 123 VNMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAASPD 182 VN+F R + DLRIWR R +F + LL +I P AL A P+ Sbjct: 127 VNLFMLSSTRELADLRIWRHRNRPDFGEREIDLLTIIGPFMRKALSLA----------PE 176 Query: 183 AGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQL 242 + L+ERE +A I RG DK+IAR L I F+TVRTH+ KL NRT+L Sbjct: 177 VSLDM----LTERERDVALLIARGCFDKDIARVLGIGFATVRTHLGNCMTKLGCANRTEL 232 >ref|YP_001713676.1| LuxR family transcriptional regulator [Acinetobacter baumannii AYE] ref|YP_002319466.1| transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] ref|YP_002325582.1| response regulator [Acinetobacter baumannii AB307-0294] ref|ZP_07228630.1| response regulator [Acinetobacter baumannii AB056] ref|ZP_07235378.1| response regulator [Acinetobacter baumannii AB058] ref|ZP_07240148.1| response regulator [Acinetobacter baumannii AB059] ref|ZP_08436132.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013150] ref|ZP_08438188.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013113] emb|CAM86679.1| putative transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gb|ACJ41483.1| transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gb|ACJ57794.1| response regulator [Acinetobacter baumannii AB307-0294] gb|EGJ58622.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013150] gb|EGJ64550.1| transcriptional regulator, LuxR family [Acinetobacter baumannii 6013113] Length = 239 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 128/239 (53%), Gaps = 15/239 (6%) Query: 4 SDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSVN 63 S + L +I+W L + +R+ + + LL AD+ ASY WD ++ + V Sbjct: 10 SPTEFTLFSEILWKLGSGKGQYNLRENIIADIAILLRADFAASYIWDSTHNLSKDGVIWK 69 Query: 64 MDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFGV 123 +DP + +YE +Q+ DPIT +L +L PT V +VMP+ L++T ++N+FL GL G+ Sbjct: 70 IDPKAMEDYECIWQFDDPITAQLHKLQKPTFVNEVMPLSDLKKTGYYNEFLKTYGLYHGI 129 Query: 124 NMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAASPDA 183 N++ +IGDLRIWR+ E F ++L L+ P FT AL Sbjct: 130 NIYFVRNGVDIGDLRIWRAQDAEMFGEREKRILTLLEPYFTQALPL-------------- 175 Query: 184 GALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQL 242 L T L+ RE + + +GLSDKE+A L I F+T+RTH+ +K+ NRT++ Sbjct: 176 -DLSTQYGLTPREQEVVHLVSKGLSDKEVASLLGIGFTTLRTHLNNSMRKIGGNNRTEM 233 >ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gb|EEY78219.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 239 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 15/239 (6%) Query: 4 SDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWDDANHRFGNTVSVN 63 S + L +I+W L + +R+ + + LL AD+ ASY WD ++ V Sbjct: 10 SPSEFTLFSEILWKLGSGKGKYNLRENIIADIAILLRADFAASYIWDSTHNLSTKGVIWK 69 Query: 64 MDPANLANYERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLARDGLCFGV 123 +DP + +YE +Q+ DPIT +L +L PT V +VMP+E L++T ++N+FL GL G+ Sbjct: 70 IDPKAMEDYECVWQFDDPITAQLHKLQKPTFVNEVMPLEDLKKTSYYNEFLRAYGLYHGI 129 Query: 124 NMFAYDGDRNIGDLRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCSAAAASPDA 183 N++ ++GDLRIWR+ + F ++L+L+ P FT AL Sbjct: 130 NIYFVRNGMDVGDLRIWRAKDADMFGEREKRILSLLEPYFTQAL---------------P 174 Query: 184 GALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLNVGNRTQL 242 L T L+ RE + + + +GLSDK +A L I F+T+RTH+ +K+ NRT++ Sbjct: 175 VDLSTQYGLTPREQEVVRLVSKGLSDKHVANLLGISFTTLRTHLNNAMRKIGCNNRTEM 233