BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0188.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775826.1| RNA polymerase sigma-E factor protein [Herba... 385 e-105 ref|YP_004235097.1| ECF subfamily RNA polymerase sigma-24 subuni... 132 3e-29 ref|YP_004696420.1| ECF subfamily RNA polymerase sigma-24 subuni... 131 5e-29 ref|YP_004293925.1| RNA polymerase, sigma-24 subunit, ECF subfam... 131 6e-29 ref|ZP_02243720.1| RNA polymerase ECF-type sigma factor [Xanthom... 127 6e-28 ref|YP_201642.1| RNA polymerase sigma-E factor [Xanthomonas oryz... 127 6e-28 ref|YP_451883.1| RNA polymerase sigma-E factor [Xanthomonas oryz... 127 6e-28 ref|NP_642013.1| RNA polymerase sigma-E factor [Xanthomonas axon... 127 9e-28 ref|YP_363449.1| RNA polymerase ECF-type sigma factor [Xanthomon... 127 9e-28 ref|YP_004851279.1| RNA polymerase ECF-type sigma factor [Xantho... 127 9e-28 >ref|YP_003775826.1| RNA polymerase sigma-E factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63918.1| RNA polymerase sigma-E factor protein [Herbaspirillum seropedicae SmR1] Length = 186 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/186 (98%), Positives = 184/186 (98%) Query: 1 MRGPSANSIEQEDIDLIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDT 60 M GPSANSIEQEDIDLIERIA GDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDT Sbjct: 1 MHGPSANSIEQEDIDLIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDT 60 Query: 61 MFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLS 120 MFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLS Sbjct: 61 MFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLS 120 Query: 121 ETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKV 180 ETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKV Sbjct: 121 ETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKV 180 Query: 181 FLSAYA 186 FLSAYA Sbjct: 181 FLSAYA 186 >ref|YP_004235097.1| ECF subfamily RNA polymerase sigma-24 subunit [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46530.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Acidovorax avenae subsp. avenae ATCC 19860] Length = 197 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/182 (43%), Positives = 97/182 (53%), Gaps = 8/182 (4%) Query: 10 EQEDIDLIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQ 69 D+ L+ IA GDR A LYR Y RL QFL RL L EEIIND +VVW KA Sbjct: 8 NSHDLALLHAIAAGDRDALATLYRGYHRRLGQFLTRLTRRTDLIEEIINDCFWVVWQKAG 67 Query: 70 TYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPE-----HQLSETQL 124 T+ G S+VSTWI I+Y+ GLK L R P +D V DE + + +L Sbjct: 68 TFRGDSRVSTWIMGISYRCGLKVL-RQSGP--LDASDDVGDETAAERGHPGINPGDDREL 124 Query: 125 RRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSA 184 R + L RLS + R V+ L Y HG S EEIA + TVK RMF+AR KL+ L Sbjct: 125 RDWLAKGLARLSADQRLVLELAYTHGHSIEEIAVITQAPVGTVKARMFHARVKLRNLLPG 184 Query: 185 YA 186 A Sbjct: 185 LA 186 >ref|YP_004696420.1| ECF subfamily RNA polymerase sigma-24 subunit [Nitrosomonas sp. Is79A3] gb|AEJ03021.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nitrosomonas sp. Is79A3] Length = 200 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 6/185 (3%) Query: 2 RGPSANSIEQEDIDLIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTM 61 R S+ + ++++ LI IA GD AFE+LY+ YF RL+QF+ + EIIND M Sbjct: 11 RSFSSQAQQEKERGLIAEIAIGDEHAFEQLYQIYFTRLSQFIFHITRRQDCIGEIINDVM 70 Query: 62 FVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDEL-VEPE---H 117 +VVW KA TY+ + STWI IAY + LK S V + + D ++DEL P+ Sbjct: 71 YVVWEKAHTYDQVCRPSTWILGIAYFKALK--STVQSQIREDRSVELNDELDYFPDRGAQ 128 Query: 118 QLSETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQK 177 S+ + R + A ++LS E R V+ +TY+ G+ Y EI++ M C NTVKTRMF+AR+ Sbjct: 129 WTSQMETRNWLEAAFDKLSMEQRAVVEMTYYQGLHYSEISEIMQCPENTVKTRMFHARKI 188 Query: 178 LKVFL 182 L L Sbjct: 189 LAKVL 193 >ref|YP_004293925.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nitrosomonas sp. AL212] gb|ADZ25763.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nitrosomonas sp. AL212] Length = 193 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 9/188 (4%) Query: 1 MRGPSANSIEQ-EDIDLIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIIND 59 M+ P ++ +Q ++ LI A G+ AFE+LY+ YF RL QF+ R+ EEIIND Sbjct: 2 MQKPFSSQEQQAKERHLIAEAAAGNGKAFEQLYQLYFNRLYQFIFRVNRHHDCIEEIIND 61 Query: 60 TMFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKA----LSRVDTPVEMDME-TMVSDELVE 114 M+VVW KA TY+ + STWI IAY + LK+ R D VE + E D V Sbjct: 62 VMYVVWEKAATYDQTCRPSTWILGIAYLKSLKSAKQNTKREDESVEFNDELDYFPDRRV- 120 Query: 115 PEHQLSETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYA 174 H +S+ + + ALE+LS E R V+ +TYF G+ Y EI++ M C NTVKTRMF+A Sbjct: 121 --HWVSQLEDSNWLEAALEKLSAEQRAVVEMTYFQGLHYSEISEIMQCPENTVKTRMFHA 178 Query: 175 RQKLKVFL 182 R+ L F Sbjct: 179 RKILAKFF 186 >ref|ZP_02243720.1| RNA polymerase ECF-type sigma factor [Xanthomonas oryzae pv. oryzicola BLS256] Length = 193 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAAGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D E +T V ++ + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDG--EAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S E R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >ref|YP_201642.1| RNA polymerase sigma-E factor [Xanthomonas oryzae pv. oryzae KACC10331] gb|AAW76257.1| RNA polymerase sigma-E factor [Xanthomonas oryzae pv. oryzae KACC10331] Length = 197 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y++Y RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D E +T V ++ + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDG--EAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S E R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 137 SPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 187 >ref|YP_451883.1| RNA polymerase sigma-E factor [Xanthomonas oryzae pv. oryzae MAFF 311018] ref|YP_001912788.1| RNA polymerase sigma-E factor [Xanthomonas oryzae pv. oryzae PXO99A] dbj|BAE69609.1| RNA polymerase sigma-E factor [Xanthomonas oryzae pv. oryzae MAFF 311018] gb|ACD58256.1| RNA polymerase sigma-E factor [Xanthomonas oryzae pv. oryzae PXO99A] Length = 193 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y++Y RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D E +T V ++ + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDG--EAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S E R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >ref|NP_642013.1| RNA polymerase sigma-E factor [Xanthomonas axonopodis pv. citri str. 306] ref|ZP_08188654.1| RNA polymerase sigma factor, sigma-70 family [Xanthomonas perforans 91-118] gb|AAM36549.1| RNA polymerase sigma-E factor [Xanthomonas axonopodis pv. citri str. 306] gb|EGD13721.1| RNA polymerase sigma factor, sigma-70 family [Xanthomonas perforans 91-118] Length = 193 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >ref|YP_363449.1| RNA polymerase ECF-type sigma factor [Xanthomonas campestris pv. vesicatoria str. 85-10] ref|ZP_06703819.1| RNA polymerase ECF-type sigma factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] emb|CAJ23395.1| RNA polymerase ECF-type sigma factor [Xanthomonas campestris pv. vesicatoria str. 85-10] gb|EFF44642.1| RNA polymerase ECF-type sigma factor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 197 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 137 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 187 >ref|YP_004851279.1| RNA polymerase ECF-type sigma factor [Xanthomonas axonopodis pv. citrumelo F1] gb|AEO41981.1| RNA polymerase ECF-type sigma factor [Xanthomonas axonopodis pv. citrumelo F1] Length = 197 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 137 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 187