BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0172.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775840.1| RNA polymerase sigma-70 factor, ECF subfamil... 346 7e-94 ref|YP_004487392.1| ECF subfamily RNA polymerase sigma-24 factor... 212 2e-53 ref|YP_933877.1| RNA polymerase ECF-subfamily sigma-70 factor [A... 184 4e-45 ref|NP_842475.1| ECF subfamily RNA polymerase sigma factor [Nitr... 181 4e-44 ref|YP_785168.1| RNA polymerase sigma factor [Bordetella avium 1... 179 2e-43 ref|YP_003050578.1| ECF subfamily RNA polymerase sigma-24 subuni... 177 6e-43 ref|YP_002801204.1| FecI family RNA polymerase sigma factor [Azo... 177 8e-43 ref|YP_004353146.1| sigma factor [Pseudomonas brassicacearum sub... 174 4e-42 ref|YP_001750328.1| ECF subfamily RNA polymerase sigma-24 factor... 172 2e-41 ref|YP_259398.1| RNA polymerase sigma factor, FecI family [Pseud... 171 3e-41 >ref|YP_003775840.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63932.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 174 Score = 346 bits (888), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 172/172 (100%), Positives = 172/172 (100%) Query: 1 VPHTVHAQRFHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPR 60 VPHTVHAQRFHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPR Sbjct: 3 VPHTVHAQRFHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPR 62 Query: 61 AWLSRIAHGLVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLG 120 AWLSRIAHGLVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLG Sbjct: 63 AWLSRIAHGLVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLG 122 Query: 121 ERARQAFLLSRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQAA 172 ERARQAFLLSRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQAA Sbjct: 123 ERARQAFLLSRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQAA 174 >ref|YP_004487392.1| ECF subfamily RNA polymerase sigma-24 factor [Delftia sp. Cs1-4] gb|AEF89037.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Delftia sp. Cs1-4] Length = 171 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/159 (67%), Positives = 124/159 (77%) Query: 13 LYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHGLVV 72 LYS+HHGWL WLRRR+G+ DAADLAQDTF+RVLGKP +L GVREPRAWL+ IAHGLVV Sbjct: 13 LYSDHHGWLVGWLRRRLGNPCDAADLAQDTFVRVLGKPQSLHGVREPRAWLTTIAHGLVV 72 Query: 73 DKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLLSRL 132 D RR +ER CL+AIA LPEP S E R +L+E+L +D LL GL +AR AFLLSRL Sbjct: 73 DHTRRAALERACLDAIASLPEPLAPSAEERHLLIESLVRMDNLLAGLPPKARSAFLLSRL 132 Query: 133 DEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQA 171 + +SYPEIA LGV LSSVEKYMA AIRHC +R+ L A Sbjct: 133 EGLSYPEIALQLGVCLSSVEKYMATAIRHCLALRKELTA 171 >ref|YP_933877.1| RNA polymerase ECF-subfamily sigma-70 factor [Azoarcus sp. BH72] emb|CAL94990.1| putative sigma-70 factor, ECF subfamily [Azoarcus sp. BH72] Length = 166 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/160 (57%), Positives = 116/160 (72%), Gaps = 1/160 (0%) Query: 9 RFHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAH 68 F +Y HH WLQ WLRRR+G + DAADLA DTFLRVL D +REPRA+L+ +AH Sbjct: 8 NFGNIYGTHHNWLQGWLRRRLGCALDAADLAHDTFLRVLAGRELTD-IREPRAYLTTVAH 66 Query: 69 GLVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFL 128 GL+V+ LRR ++ER CL+A+A LPEP SPEAR + VE L IDA+L+GL +AR AFL Sbjct: 67 GLMVNHLRRRDIERACLDALASLPEPLAPSPEARALAVELLLEIDAMLDGLSRKARTAFL 126 Query: 129 LSRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQS 168 LS+L+ ++Y EIA LGVS+S V KYM AI HC +RQ+ Sbjct: 127 LSQLEGLTYAEIAEQLGVSVSMVRKYMLQAITHCLQIRQA 166 >ref|NP_842475.1| ECF subfamily RNA polymerase sigma factor [Nitrosomonas europaea ATCC 19718] emb|CAD86398.1| Sigma factor, ECF subfamily [Nitrosomonas europaea ATCC 19718] Length = 213 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/167 (53%), Positives = 122/167 (73%), Gaps = 2/167 (1%) Query: 1 VPHT-VHAQRFHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREP 59 VP T + A + H LY++HHGWL WLR ++G++ DAAD+AQDTF+R+L + + + EP Sbjct: 45 VPATDLAAHQIHILYTDHHGWLYNWLRHKLGNACDAADIAQDTFMRILTRQQPVH-LNEP 103 Query: 60 RAWLSRIAHGLVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGL 119 RA+LS IAHGLV+D RR E+ER LE +A LPEPE +PE RLI +EAL ID LL+ L Sbjct: 104 RAYLSTIAHGLVIDHWRRRELERAWLETLASLPEPEAPAPETRLIFLEALIEIDRLLDSL 163 Query: 120 GERARQAFLLSRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMR 166 R R FLL++LD ++ P+IA LGVSLS+VE+Y+ A+R CY++R Sbjct: 164 KPRVRTTFLLAQLDGLTCPQIAERLGVSLSTVERYITKALRSCYMLR 210 >ref|YP_785168.1| RNA polymerase sigma factor [Bordetella avium 197N] emb|CAJ48241.1| probable RNA polymerase sigma factor [Bordetella avium 197N] Length = 231 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 86/155 (55%), Positives = 119/155 (76%), Gaps = 1/155 (0%) Query: 12 TLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHGLV 71 TLY++HHGWLQ W+RR++G+SF+AADLA D FLR+L +P A++ REPRA+LS IA GL+ Sbjct: 74 TLYADHHGWLQSWMRRQLGNSFEAADLAHDVFLRLLRRPAAIE-TREPRAYLSAIARGLL 132 Query: 72 VDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLLSR 131 +D RR E+ER LEA+AH PE SPE R++++EAL ID +L+ L + RQAFL ++ Sbjct: 133 IDHWRRRELERAWLEALAHTPEALAPSPETRMLVLEALIKIDQMLDTLKPKVRQAFLWAQ 192 Query: 132 LDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMR 166 L+ M P+IA+ LGVSL++ E+Y+AA +RHCY R Sbjct: 193 LEGMRCPQIAQRLGVSLATAERYVAAGLRHCYACR 227 >ref|YP_003050578.1| ECF subfamily RNA polymerase sigma-24 subunit [Methylovorus glucosetrophus SIP3-4] gb|ACT50051.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Methylovorus glucosetrophus SIP3-4] Length = 171 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/151 (58%), Positives = 108/151 (71%) Query: 11 HTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHGL 70 H LY+ HHGWL +WLRRR+G A DLAQDTF+RVL KP + GV EPRA+LSRIAHGL Sbjct: 10 HKLYNIHHGWLVEWLRRRLGCVHHAHDLAQDTFVRVLDKPLVIQGVHEPRAFLSRIAHGL 69 Query: 71 VVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLLS 130 +VD+ RR +E+ LEA+ HLP + S E R++ +EAL IDA+ GL R AFLLS Sbjct: 70 MVDQFRRRAIEQAYLEALQHLPTRHMESAEERMMNIEALMRIDAMFAGLNPNIRTAFLLS 129 Query: 131 RLDEMSYPEIARHLGVSLSSVEKYMAAAIRH 161 RL M+YP+IAR + VSL SVE YMA AI H Sbjct: 130 RLHGMTYPDIAREMNVSLRSVEGYMAKAIGH 160 >ref|YP_002801204.1| FecI family RNA polymerase sigma factor [Azotobacter vinelandii DJ] gb|ACO80229.1| RNA polymerase sigma factor, FecI family [Azotobacter vinelandii DJ] Length = 166 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 113/156 (72%), Gaps = 1/156 (0%) Query: 10 FHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHG 69 FHTLYS+HH WL+ WLR R+G++ DAADLAQDTF+RVL A DG+REPR +LS IA Sbjct: 9 FHTLYSQHHDWLKGWLRSRIGNTSDAADLAQDTFMRVLANRNA-DGIREPRTYLSTIARA 67 Query: 70 LVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLL 129 L++D RR+ +ER LEA+A PEP +SPE RL ++E L IDA+L+GLGER R FL Sbjct: 68 LLIDHFRRQSIERAYLEALAARPEPLAISPETRLAILETLTAIDAMLDGLGERTRAIFLA 127 Query: 130 SRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLM 165 +L+ + Y + LGVS+++V+K++ A+ HC L+ Sbjct: 128 VQLEGLGYAAVGERLGVSVTTVKKHLIRAMTHCLLL 163 >ref|YP_004353146.1| sigma factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68142.1| Putative sigma factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 173 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%) Query: 12 TLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHGLV 71 LYS+HHGWLQ WLR+R+G++FDAADLAQDTF+RV+ ALD +REPR +LS IA GL+ Sbjct: 14 VLYSDHHGWLQGWLRKRLGNTFDAADLAQDTFVRVIKARTALD-IREPRPYLSMIAKGLL 72 Query: 72 VDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLLSR 131 +D RR +E++ LE +A +P+ + S E + I+++AL ID LL GLG R RQAF+LS+ Sbjct: 73 IDLFRRRSLEQSYLEVLAAMPQEQHPSLEEQAIMLQALMEIDRLLLGLGPRVRQAFILSQ 132 Query: 132 LDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQ 170 D ++YP+IA LGVS+ +V +MA A+ HC LM+ LQ Sbjct: 133 FDGLTYPQIAERLGVSVRTVNNHMAKAMEHCCLMQIQLQ 171 >ref|YP_001750328.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas putida W619] gb|ACA73959.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudomonas putida W619] Length = 171 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/157 (52%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Query: 13 LYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHGLVV 72 LY EHH WL WLR+R+G++FDAADL QDTF+RV+ ALD +REPR +LSRIA GL++ Sbjct: 15 LYCEHHSWLNGWLRKRLGNAFDAADLTQDTFVRVIKARSALD-IREPRPYLSRIAKGLLI 73 Query: 73 DKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLLSRL 132 D RR +E+ LEA+A LP+ + S E + I+++AL ID LL+GLG + RQ F+LS+ Sbjct: 74 DLFRRRSLEQAYLEALAALPQAQHPSLEEQAIMLQALVEIDRLLQGLGPKVRQVFMLSQF 133 Query: 133 DEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSL 169 D ++YP+IA L +S+ SV YMA A+ HC LM+ L Sbjct: 134 DGLTYPQIAEQLNISVRSVNNYMAKAMEHCCLMQMQL 170 >ref|YP_259398.1| RNA polymerase sigma factor, FecI family [Pseudomonas fluorescens Pf-5] gb|AAY91564.1| RNA polymerase sigma factor, FecI family [Pseudomonas fluorescens Pf-5] Length = 173 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 13 LYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVREPRAWLSRIAHGLVV 72 LY+ HHGWLQ WLR+R+G++FDAADLAQDTF+RVL A++ +REPR +LSRIA GL++ Sbjct: 15 LYTHHHGWLQGWLRQRLGNAFDAADLAQDTFVRVLKARNAVE-IREPRPYLSRIARGLLI 73 Query: 73 DKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEGLGERARQAFLLSRL 132 D RR +E+ LEA+A +PE E SPE + +L +AL +D LL+GLG + +QAFLLS+ Sbjct: 74 DLFRRRSLEQAYLEALALVPEGEHPSPEEQSVLFQALMEVDRLLDGLGPKVKQAFLLSQC 133 Query: 133 DEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQ 170 D ++Y +IA L +S+ SV YMA A+ HC LM+ +Q Sbjct: 134 DGLTYEQIAERLQISVRSVSNYMAKAMEHCCLMQMRMQ 171