BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0171.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775842.1| transcription response regulator protein [He... 422 e-116 ref|YP_001109885.1| two component transcriptional regulator [Bur... 274 6e-72 ref|YP_585146.1| winged helix family two component transcription... 274 7e-72 ref|ZP_08273573.1| Response regulator receiver:Transcriptional r... 271 6e-71 ref|ZP_08019170.1| two component response regulator [Lautropia m... 270 8e-71 ref|YP_285504.1| two component transcriptional regulator [Dechlo... 270 1e-70 gb|EGH11900.1| winged helix family two component transcriptional... 268 5e-70 gb|EGD00591.1| two component transcriptional regulator [Burkhold... 266 2e-69 ref|ZP_03268711.1| two component transcriptional regulator, wing... 263 1e-68 ref|ZP_00943203.1| Hypothetical Protein RRSL_04185 [Ralstonia so... 262 3e-68 >ref|YP_003775842.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63934.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR Sbjct: 5 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 64 Query: 61 QLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASD 120 QLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASD Sbjct: 65 QLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASD 124 Query: 121 QLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEE 180 QLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEE Sbjct: 125 QLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEE 184 Query: 181 VESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 VESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS Sbjct: 185 VESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 220 >ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO60104.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDY+ KPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKGGTAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG +TLD A K AC +GP V LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + + Sbjct: 185 EVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >ref|YP_585146.1| winged helix family two component transcriptional regulator (Tn6048) [Cupriavidus metallidurans CH34] ref|YP_586176.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|YP_587109.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|ZP_04763697.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ABF09877.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF10907.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF11840.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|EER59508.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98] gb|EGD05874.1| winged helix family two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDY+ KPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKGGTAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG +TLD A K AC +GP V LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + + Sbjct: 185 EVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >ref|ZP_08273573.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32956.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 139/215 (64%), Positives = 168/215 (78%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIGE ++ ALKD YAADWV+ G AL LA Q+YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDIMIGEAIQGALKDASYAADWVKNGQTALTTLACQRYDLVLLDLGLPGKDGLEVLT 64 Query: 61 QLR-THSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDYLLKPF I ELLAR+RAVLRR+ G+A+ Sbjct: 65 SIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAVLRRKGGSAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 L NG ++LD A + A +G +V LS REF LL AL+ RPGAILSR ELE++LYGWGE Sbjct: 125 PVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRRELEDRLYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVEFLIH+LRRKL + IKNVRG+GW+V + Sbjct: 185 EVESNAVEFLIHALRRKLGSDVIKNVRGVGWMVSK 219 >ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599] gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599] Length = 221 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 137/215 (63%), Positives = 167/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG V AL D +AADWV+ G++AL AL Q YD +LLDLGLPG DGL VLR Sbjct: 5 LVEDDPMIGNAVHGALNDASWAADWVKDGNSALTALRTQHYDLVLLDLGLPGRDGLEVLR 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R+ + LPVL++TARD + DRI GLDAGADDY+LKPF I ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAVLRRQGGQAN 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LS+ +TLD A A + P V LS REFALL ALM RPGAILSRA+LE+++YGWG+ Sbjct: 125 PILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADLEDRIYGWGQ 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNA+E+LIHSLR+KL EAI+N+RG GW+V + Sbjct: 185 EVESNAIEYLIHSLRKKLGSEAIRNIRGAGWMVSK 219 >ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gb|AAZ47034.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/215 (63%), Positives = 166/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIGE ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDFMIGEAIQGALKDASYAADWVKNGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLT 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDYLLKPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAVLRRKGGNAT 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG ++LD A + A +V LS REFALL AL+ RPGAILSR++LE+++YGWGE Sbjct: 125 SVLSNGVVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSDLEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVEFLIH+LRRKL E IKNVRG+GW+V + Sbjct: 185 EVESNAVEFLIHALRRKLGGEVIKNVRGVGWMVSK 219 >gb|EGH11900.1| winged helix family two component transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gb|EGH65418.1| winged helix family two component transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 221 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 138/215 (64%), Positives = 165/215 (76%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIGE ++ AL D YAADWV+ G AL AL Q YD +LLDLGLPG DG AVL Sbjct: 5 LVEDDPMIGEAIQGALNDASYAADWVKDGLLALTALDAQYYDLVLLDLGLPGKDGQAVLS 64 Query: 61 QLRTHS-LLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R S +P+L+ITARD + DR+ GLD GADDYLLKPF + ELLAR+RAVLRR+ G+ Sbjct: 65 NIRGQSNAVPLLIITARDSLDDRLRGLDGGADDYLLKPFDMAELLARMRAVLRRKGGSGK 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 L NG +TLD ++K AC + PAV LS REFALL AL+ RPGAILSRA+LE+++YGWG Sbjct: 125 PLLGNGVVTLDPSSKEACTDQNPAVQLSGREFALLQALLIRPGAILSRADLEDRIYGWGN 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVEFLIH+LRRKL IKNVRG+GW+V + Sbjct: 185 EVESNAVEFLIHALRRKLGSHVIKNVRGVGWMVSK 219 >gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 L+EDDAMIGE V+ ALKD YA DW + G +A AL QQYD ++LDLGLPG DGL VL Sbjct: 5 LIEDDAMIGEAVQDALKDASYAVDWAKTGTSASTALENQQYDLVVLDLGLPGKDGLDVLT 64 Query: 61 QLR-THSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R T + +PV+V+TARD + DR+ GLD GADDY+LKPF + ELLARLRAVLRR++G A+ Sbjct: 65 SIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAVLRRKNGGAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 L NG ++LD A + A GP + L+ REFALL AL+ RPGAILSR +LE+++YGWGE Sbjct: 125 PTLGNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSRNDLEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVE+LIHSLRRKL E I+NVRG+GW+V + Sbjct: 185 EVESNAVEYLIHSLRRKLGGEIIRNVRGVGWMVSK 219 >ref|ZP_03268711.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gb|EDZ99706.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 221 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDL LPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGLEVLV 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 ++R + +P+L+ITARDG+ DR+ GLD GADDY+LKPF + ELLAR+RAVLRR+ G+A+ Sbjct: 65 RIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRKGGSAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG ++LD A K A G + LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + Sbjct: 185 EVESNAVEYLIHALRRKLGSEVIKNVRGVGWMVSK 219 >ref|ZP_00943203.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551] ref|YP_002258230.1| response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] ref|YP_003744029.1| transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gb|EAP74239.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551] emb|CAQ17806.1| response regulator protein [Ralstonia solanacearum MolK2] emb|CAQ60149.1| response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] emb|CBJ41377.1| Transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gb|AEG67337.1| transcriptional regulatory protein [Ralstonia solanacearum Po82] Length = 221 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 L+EDD MIG V AL+D YA DWVR G A+ Q YD LLLDLGLPG DG AVLR Sbjct: 5 LIEDDPMIGAVVEAALRDAAYAVDWVRDGQTAIDVSGHQHYDVLLLDLGLPGQDGHAVLR 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 LR + +PVL++TARD + +R+ GLD GADDY+LKPF + ELLAR+RAVLRRR GAAS Sbjct: 65 TLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRGGAAS 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG ++LD A +G AV LS REFALL LM RPGAILSR+ELEE++YGWG Sbjct: 125 PVLSNGMLSLDPATHEVRVGDGEAVRLSGREFALLQTLMLRPGAILSRSELEERIYGWGH 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EV SNAVEFLIH+LR+KL E+IKNVRG+GW+V + Sbjct: 185 EVASNAVEFLIHALRKKLGAESIKNVRGVGWMVSK 219