BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0169.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775844.1| cytochrome b561 protein [Herbaspirillum sero... 340 6e-92 ref|YP_003522801.1| cytochrome B561 [Sideroxydans lithotrophicus... 135 2e-30 ref|YP_004675274.1| Cytochrome B561 [Hyphomicrobium sp. MC1] >gi... 130 8e-29 ref|YP_001156151.1| cytochrome B561 [Polynucleobacter necessariu... 128 2e-28 ref|YP_523279.1| cytochrome B561 [Rhodoferax ferrireducens T118]... 127 9e-28 ref|YP_004380919.1| cytochrome b561 [Pseudomonas mendocina NK-01... 127 9e-28 ref|YP_004215466.1| cytochrome b561 [Rahnella sp. Y9602] >gi|321... 122 2e-26 ref|YP_001171443.1| cytochrome b561 [Pseudomonas stutzeri A1501]... 121 5e-26 gb|AEA82759.1| cytochrome b561 [Pseudomonas stutzeri DSM 4166] 120 5e-26 ref|YP_003848409.1| Cytochrome b/b6 domain [Gallionella capsifer... 120 6e-26 >ref|YP_003775844.1| cytochrome b561 protein [Herbaspirillum seropedicae SmR1] gb|ADJ63936.1| cytochrome b561 protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 340 bits (871), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 172/172 (100%), Positives = 172/172 (100%) Query: 1 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 60 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA Sbjct: 18 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 77 Query: 61 FGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKD 120 FGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKD Sbjct: 78 FGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKD 137 Query: 121 MALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMSLRGPRQN 172 MALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMSLRGPRQN Sbjct: 138 MALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMSLRGPRQN 189 >ref|YP_003522801.1| cytochrome B561 [Sideroxydans lithotrophicus ES-1] gb|ADE10414.1| cytochrome B561 [Sideroxydans lithotrophicus ES-1] Length = 182 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 60 +S+ +HW++ LLF+ ATI R+ PKG R+ L+T H G L LV LRL AR Sbjct: 13 VSIGIHWLMLLLFIAVYATINLRELYPKGSDPREALKTWHFMLGMLAFGLVWLRLAAR-- 70 Query: 61 FGVPPEL---ALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVIL 117 F P L ALPR Q + +HL LYA+MIG+P+TG L A G+ + FFG+ LP ++ Sbjct: 71 FSGPTPLIQPALPRSQEISSKLLHLALYALMIGMPITGWLLLSASGKPIPFFGLQLPALI 130 Query: 118 AKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 ++ L IKE HEF+G A Y+L+GLH + AL+H + R L RM Sbjct: 131 GQNKELASQIKEVHEFVGTAGYYLIGLHTIAALYHHYIKRDNTLTRM 177 >ref|YP_004675274.1| Cytochrome B561 [Hyphomicrobium sp. MC1] emb|CCB64700.1| Cytochrome B561 [Hyphomicrobium sp. MC1] Length = 186 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 68/166 (40%), Positives = 100/166 (60%), Gaps = 5/166 (3%) Query: 2 SVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKAF 61 ++ LHW++ +L IE + PKG R LL ++HM G VL+LV++R+ R Sbjct: 18 AIALHWIMAVLIAAVFTAIELKGYYPKGSETRALLASIHMMLGITVLLLVIIRIGIRSHN 77 Query: 62 GVPPELALPRVQRWGAAAVHL---LLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILA 118 G PP +PR W A HL +LYA MIG+P+ G + A G V F+G++LP I+ Sbjct: 78 GTPP--IIPRPAVWQTAIAHLTHFILYAAMIGMPLLGWIMVSAAGHSVPFYGLSLPPIVG 135 Query: 119 KDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 +D AL ++E HEF+GNA+Y+++GLH +GAL+H + R L RM Sbjct: 136 EDKALSHNLEEIHEFIGNALYYVIGLHAVGALFHHYVLRDNTLIRM 181 >ref|YP_001156151.1| cytochrome B561 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34587.1| cytochrome B561 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 180 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 96/163 (58%) Query: 2 SVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKAF 61 S+ HW+IF L ++AL IE + P+G R+L +TVH GQL+ I + +RL R + Sbjct: 10 SIFFHWLIFTLVILALGVIELKGQFPRGSEPRELCKTVHSFLGQLIFIAMAIRLCVRLKY 69 Query: 62 GVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKDM 121 G P L L + A +H Y +++ LP+ G +F QAGG++V F P +++ + Sbjct: 70 GAPKPLNLNKPLLVLAKGLHWTFYLLLLTLPIMGFIFLQAGGKEVHFLSWAWPELISPNP 129 Query: 122 ALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 ++ KE HE++GNA+YFL+GLH L LWH + + L+RM Sbjct: 130 DIKKIFKESHEWLGNALYFLIGLHALAGLWHHYLLKDDTLRRM 172 >ref|YP_523279.1| cytochrome B561 [Rhodoferax ferrireducens T118] gb|ABD69748.1| cytochrome B561 [Rhodoferax ferrireducens T118] Length = 186 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 97/164 (59%), Gaps = 1/164 (0%) Query: 2 SVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKAF 61 S+ LHW++ LF+ A+I R+ KG R+ L+++H G L+ LV LRL R + Sbjct: 14 SISLHWLMLALFIGVYASINLRELFDKGSVPREALKSLHFMLGLLMFALVWLRLAMRAIY 73 Query: 62 GVP-PELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKD 120 P P+ ALP+ Q HL+LYA+MIG+P+ G L A G+ + FFG+ LP ++ D Sbjct: 74 PAPRPQAALPQWQAMAGKLAHLVLYAIMIGMPLLGWLMLSAAGKPIPFFGLALPALIGPD 133 Query: 121 MALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 AL G +KE HEF+G A YFL+G H AL+H + R L RM Sbjct: 134 KALAGQLKEIHEFVGTAGYFLIGGHAAAALFHHYVQRDNTLLRM 177 >ref|YP_004380919.1| cytochrome b561 [Pseudomonas mendocina NK-01] gb|AEB59167.1| cytochrome b561 [Pseudomonas mendocina NK-01] Length = 182 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 1 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 60 LS+ LHW++ LL A IE + + PKG R+LL+ H G V LV LRLLAR Sbjct: 13 LSIGLHWLMLLLIAAVYACIELKGNFPKGSDTRELLKQWHFMLGLTVFALVWLRLLARAL 72 Query: 61 FGVPP-ELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAK 119 P E A P Q A +HL LYA+MIG P+ G L A G+ + FFG+ LP ++A Sbjct: 73 NPTPTIEPAPPGWQNLLAKLMHLALYALMIGAPLAGWLILSAAGKPIPFFGLELPALIAP 132 Query: 120 DMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 + L G IKE HE G A Y+L+GLH L L+H + R L+RM Sbjct: 133 NKELAGQIKELHELAGTAGYWLIGLHALAGLYHHYVVRDNTLKRM 177 >ref|YP_004215466.1| cytochrome b561 [Rahnella sp. Y9602] gb|ADW76339.1| cytochrome b561 [Rahnella sp. Y9602] Length = 177 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 1/165 (0%) Query: 1 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 60 + ++LHW++F+L V+ AT++ + KG P R+LL H G VL L+ +RL R Sbjct: 8 VQIMLHWLVFVLVVLTYATMDIKGWFAKGTPARELLALTHYSLGFCVLFLMCMRLFVRAM 67 Query: 61 FGVPP-ELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAK 119 + PP + ALPR Q + + + H+L+Y + + LPV GIL GG D F + +P + Sbjct: 68 YVTPPVKPALPRWQHYLSGSAHVLIYLMFLSLPVLGILSRYYGGHDWTMFNILMPKSVFP 127 Query: 120 DMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 D+ L+ K HE++ NA Y+L+GLH L ALWH + R L RM Sbjct: 128 DLPLQKQFKTLHEWLANAGYYLIGLHALAALWHHYRRRDNTLIRM 172 >ref|YP_001171443.1| cytochrome b561 [Pseudomonas stutzeri A1501] gb|ABP78601.1| cytochrome b561 [Pseudomonas stutzeri A1501] Length = 183 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/164 (43%), Positives = 94/164 (57%) Query: 1 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 60 LS+ LHW++ LL ATIE + + KG R+LL+ H G V LV LRL+AR Sbjct: 13 LSIALHWLMLLLIAAVYATIELKGNFAKGSEPRELLKHWHFMLGMTVFALVWLRLIARWL 72 Query: 61 FGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKD 120 P LA ++ A +HL LYA+MIGLP+ G L A G+ + FFG+ LP ++ D Sbjct: 73 HPAPHSLAGAGWEQALAKLMHLALYALMIGLPLLGWLTLSAAGKPIPFFGLELPALIGAD 132 Query: 121 MALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 AL G KE HE + A Y+L+GLH AL+HQ+ R L RM Sbjct: 133 KALAGDFKELHETLAVAGYWLIGLHAAAALFHQYVRRDGTLLRM 176 >gb|AEA82759.1| cytochrome b561 [Pseudomonas stutzeri DSM 4166] Length = 183 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/164 (43%), Positives = 94/164 (57%) Query: 1 LSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKA 60 LS+ LHW++ LL ATIE + + KG R+LL+ H G V LV LRL+AR Sbjct: 13 LSIALHWLMLLLIAAVYATIELKGNFAKGSEPRELLKHWHFMLGMTVFALVWLRLIARWL 72 Query: 61 FGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILAKD 120 P LA ++ A +HL LYA+MIGLP+ G L A G+ + FFG+ LP ++ D Sbjct: 73 HPAPRSLAGAGWEQALAKLMHLALYALMIGLPLLGWLTLSAAGKPIPFFGLELPALIGAD 132 Query: 121 MALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 AL G KE HE + A Y+L+GLH AL+HQ+ R L RM Sbjct: 133 KALAGDFKELHETLAVAGYWLIGLHAAAALFHQYVRRDGTLLRM 176 >ref|YP_003848409.1| Cytochrome b/b6 domain [Gallionella capsiferriformans ES-2] gb|ADL56645.1| Cytochrome b/b6 domain [Gallionella capsiferriformans ES-2] Length = 182 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 5/166 (3%) Query: 2 SVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRLLARKAF 61 ++ +HW++ LLF+ A IE R PKG LR+ L+T H G L+ LV LRL R + Sbjct: 14 AIGIHWLMLLLFIAVYACIELRVFYPKGSELREGLKTWHFMLGMLLFALVWLRLAVRLST 73 Query: 62 GVPPELALPRVQRW---GAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPVILA 118 P L P ++W A +HL LYA+MIG+P+TG L A G+ + FFG LP ++ Sbjct: 74 ITP--LIRPEPEKWQDLSAKLMHLALYALMIGMPLTGWLLLSASGKPIPFFGFELPALIG 131 Query: 119 KDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRM 164 + + IKE HE +G A Y+L+G+H AL+H ++ R L RM Sbjct: 132 ESKDIAKQIKEIHELVGTAGYYLIGMHAAAALYHHYWLRDNTLTRM 177