BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0143.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775865.1| two component response regulator protein [He... 364 3e-99 ref|YP_001354324.1| two-component response regulator [Janthinoba... 307 3e-82 ref|YP_004752852.1| putative Two-component response regulator [C... 303 5e-81 ref|YP_001100939.1| putative two-component response regulator [H... 290 8e-77 ref|YP_001020933.1| two-component response regulator [Methylibiu... 285 3e-75 ref|YP_002945932.1| two component Fis family transcriptional reg... 280 6e-74 ref|ZP_01915182.1| response regulator [Limnobacter sp. MED105] >... 276 6e-73 ref|YP_003278187.1| response regulator receiver protein [Comamon... 270 6e-71 ref|ZP_03543406.1| two component transcriptional regulator, Fis ... 270 8e-71 ref|YP_001565079.1| two component Fis family transcriptional reg... 269 1e-70 >ref|YP_003775865.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63957.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 364 bits (934), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 178/178 (100%), Positives = 178/178 (100%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG Sbjct: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV Sbjct: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 >ref|YP_001354324.1| two-component response regulator [Janthinobacterium sp. Marseille] gb|ABR89253.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 179 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/179 (84%), Positives = 162/179 (90%), Gaps = 1/179 (0%) Query: 1 MPAD-RLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLG 59 M AD RLLLIIEDDAAFARTLGRSFERRGYTVLLAA+ E A+ L++H PGYAVVDLKL Sbjct: 1 MSADNRLLLIIEDDAAFARTLGRSFERRGYTVLLAANLEAASALLREHNPGYAVVDLKLE 60 Query: 60 GNASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGH 119 GN SGLACVQMLH HD MLIVVLTGFAS+ TAVEAIKLGACQYLAKPSNTDDIEAAFGH Sbjct: 61 GNTSGLACVQMLHKHDPAMLIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGH 120 Query: 120 VAGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 VAGV E+E+ R+TSIKTLEWERIHEVLV+TDFNISE ARRLGMHRRTLARKLEKQR+K Sbjct: 121 VAGVVEIEVSNRSTSIKTLEWERIHEVLVETDFNISEAARRLGMHRRTLARKLEKQRIK 179 >ref|YP_004752852.1| putative Two-component response regulator [Collimonas fungivorans Ter331] gb|AEK62029.1| putative Two-component response regulator [Collimonas fungivorans Ter331] Length = 184 Score = 303 bits (777), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 149/178 (83%), Positives = 158/178 (88%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M DRLLLIIEDDA FARTLGRSFERR YTVLLA++ EAA L+QH PGYAVVDLKL Sbjct: 7 MATDRLLLIIEDDATFARTLGRSFERRDYTVLLASNLGEAAALLRQHSPGYAVVDLKLND 66 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 + SGLACVQMLH HD MLIVVLTGFASI TAVEAIKLGACQYLAKPSNTDDIEAAFGHV Sbjct: 67 STSGLACVQMLHKHDPAMLIVVLTGFASINTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 126 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 AG +E+EL R+TSIKTLEWERIHEVLV+T FNISETARRLGMHRRTLARKLEKQR+K Sbjct: 127 AGAAEIELSNRSTSIKTLEWERIHEVLVETGFNISETARRLGMHRRTLARKLEKQRIK 184 >ref|YP_001100939.1| putative two-component response regulator [Herminiimonas arsenicoxydans] emb|CAL62818.1| Putative two-component response regulator [Herminiimonas arsenicoxydans] Length = 178 Score = 290 bits (741), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 143/178 (80%), Positives = 153/178 (85%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M +R LLIIEDD AFARTLGRSFERR Y VLLA+SQ+EAA LQQ +P YAVVDLKL G Sbjct: 1 MSVERTLLIIEDDGAFARTLGRSFERRNYRVLLASSQDEAAALLQQEKPAYAVVDLKLNG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 + SGLACVQMLH HD M IVVLTGFAS+ TAVEAIKLGACQYLAKPSNTDDIEAAFGHV Sbjct: 61 HTSGLACVQMLHKHDPAMQIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 AG +VEL R+TSIKTLEWE IH VL ++DFNISE ARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGNVDVELGNRSTSIKTLEWEHIHAVLAESDFNISEAARRLGMHRRTLARKLEKQRVK 178 >ref|YP_001020933.1| two-component response regulator [Methylibium petroleiphilum PM1] gb|ABM94698.1| two-component response regulator [Methylibium petroleiphilum PM1] Length = 178 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 140/178 (78%), Positives = 154/178 (86%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M +RLLLI+EDDA+FARTLGRSFERRGYTVLLAA+ E+ A L++ PGYAVVDLKL G Sbjct: 1 MDVERLLLIVEDDASFARTLGRSFERRGYTVLLAANLEQVAALLRERTPGYAVVDLKLAG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 SGLACV+ LHAHD +MLIVVLTG+ASI TAVEAIKLGAC YLAKPSNTDDIEAAFG Sbjct: 61 GGSGLACVRTLHAHDPEMLIVVLTGYASIATAVEAIKLGACHYLAKPSNTDDIEAAFGRA 120 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 G +EV+L RA+SIKTLEWERIHE L +T FNISETARRLGMHRRTLARKLEKQRVK Sbjct: 121 EGNAEVDLTQRASSIKTLEWERIHETLAETGFNISETARRLGMHRRTLARKLEKQRVK 178 >ref|YP_002945932.1| two component Fis family transcriptional regulator [Variovorax paradoxus S110] gb|ACS20666.1| two component transcriptional regulator, Fis family [Variovorax paradoxus S110] Length = 182 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 137/175 (78%), Positives = 148/175 (84%) Query: 4 DRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNAS 63 +R LLI+EDDAAFARTLG+SFERRGY V A++ EE LQ H PGYAVVDLKL G AS Sbjct: 8 ERQLLIVEDDAAFARTLGKSFERRGYAVTQASNAEEVEALLQAHSPGYAVVDLKLNGEAS 67 Query: 64 GLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGV 123 GLACVQMLH H+ MLIVVLTGFASI TAVEAIKLGAC YLAKPSNTDDIEAAFG G Sbjct: 68 GLACVQMLHRHNPKMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFGRATGT 127 Query: 124 SEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 +EVEL R+TSIKTLEWERIHE+L +T FNISETARRLGMHRRTLARKL KQ+VK Sbjct: 128 TEVELTNRSTSIKTLEWERIHEMLAETGFNISETARRLGMHRRTLARKLGKQQVK 182 >ref|ZP_01915182.1| response regulator [Limnobacter sp. MED105] gb|EDM83693.1| response regulator [Limnobacter sp. MED105] Length = 182 Score = 276 bits (707), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 137/175 (78%), Positives = 147/175 (84%) Query: 4 DRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNAS 63 +RLLL++EDD AFAR L RSFERR Y VL A+SQEE L + P +AVVDLKL GN+S Sbjct: 8 ERLLLLVEDDEAFARVLKRSFERRDYKVLHASSQEEMQDVLLKQTPTHAVVDLKLSGNSS 67 Query: 64 GLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGV 123 GL CVQ LH H+ MLIVVLTGFASI TAVEAIKLGACQYLAKPSNTDDIEAAFGHVAG Sbjct: 68 GLNCVQALHEHNPTMLIVVLTGFASINTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGS 127 Query: 124 SEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 VEL R TSIK LEWERIHEVLV+TDFNISETARRLGMHRRTLARKLEK+RVK Sbjct: 128 EPVELTNRTTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKRRVK 182 >ref|YP_003278187.1| response regulator receiver protein [Comamonas testosteroni CNB-2] ref|ZP_07046910.1| response regulator receiver protein [Comamonas testosteroni S44] gb|ACY32891.1| response regulator receiver protein [Comamonas testosteroni CNB-2] gb|EFI59471.1| response regulator receiver protein [Comamonas testosteroni S44] Length = 178 Score = 270 bits (691), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 133/178 (74%), Positives = 148/178 (83%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M DRLLL++EDDAAFARTL RSFERRGY VL A S EE L QHRP YAV+DLKL G Sbjct: 1 MEEDRLLLLVEDDAAFARTLKRSFERRGYRVLHATSGEEVQLLLTQHRPQYAVMDLKLAG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 NASGL CVQMLH H+ D LIVVLTG+ASI TAVEA+KLGAC YLAKPSNTDDIEAAFG V Sbjct: 61 NASGLNCVQMLHLHNPDALIVVLTGYASIATAVEAVKLGACHYLAKPSNTDDIEAAFGRV 120 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 G ++VE+ ++ TSIKTLEWE IHE L ++ FNISE ARRLGMHRRTLARKLEK++VK Sbjct: 121 EGRTDVEVSSQTTSIKTLEWEHIHETLAESGFNISEAARRLGMHRRTLARKLEKRQVK 178 >ref|ZP_03543406.1| two component transcriptional regulator, Fis family [Comamonas testosteroni KF-1] gb|EED67692.1| two component transcriptional regulator, Fis family [Comamonas testosteroni KF-1] Length = 178 Score = 270 bits (689), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 132/178 (74%), Positives = 148/178 (83%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M DRLLL++EDDAAFARTL RSFERRGY VL A S EE L QHRP YAV+DLKL G Sbjct: 1 MEEDRLLLLVEDDAAFARTLKRSFERRGYRVLHATSGEEVQLLLTQHRPQYAVMDLKLAG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 NASGL CVQMLH H+ D LIVVLTG+ASI TAVEA+KLGAC YLAKPSNTDDIEAAFG + Sbjct: 61 NASGLNCVQMLHLHNPDALIVVLTGYASIATAVEAVKLGACHYLAKPSNTDDIEAAFGRI 120 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 G ++VE+ ++ TSIKTLEWE IHE L ++ FNISE ARRLGMHRRTLARKLEK++VK Sbjct: 121 EGRTDVEVSSQTTSIKTLEWEHIHETLAESGFNISEAARRLGMHRRTLARKLEKRQVK 178 >ref|YP_001565079.1| two component Fis family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX36694.1| two component transcriptional regulator, Fis family [Delftia acidovorans SPH-1] Length = 178 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 130/178 (73%), Positives = 148/178 (83%) Query: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 M + RLLL++EDDA FARTL RSFERRGY VL AAS EE + LQ H P YAV+DLKL G Sbjct: 1 MDSSRLLLLVEDDATFARTLTRSFERRGYRVLQAASAEEVRELLQTHSPQYAVMDLKLAG 60 Query: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 NASGL+CVQMLH H+ + LIVVLTG+ASI TAVEA+KLGAC YLAKPSNTDDIEAAFG + Sbjct: 61 NASGLSCVQMLHQHNPEALIVVLTGYASIATAVEAVKLGACHYLAKPSNTDDIEAAFGRL 120 Query: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 G ++VEL TSIKTLEWE IHE L ++DFNISE ARRLGMHRRTLARKLEK+++K Sbjct: 121 EGRTDVELSRNPTSIKTLEWEHIHETLAESDFNISEAARRLGMHRRTLARKLEKRQIK 178