BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0139.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775869.1| cytochrome o ubiquinol oxidase subunit III p... 422 e-116 ref|YP_004752856.1| cytochrome O ubiquinol oxidase subunit III [... 346 1e-93 ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [... 338 2e-91 ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [O... 327 1e-87 ref|YP_001100943.1| cytochrome o ubiquinol oxidase subunit III [... 323 1e-86 ref|YP_729183.1| bo3-type chinol oxidase, subunit III [Ralstonia... 311 5e-83 ref|YP_001020936.1| cytochrome ubiquinol oxidase subunit III [Me... 310 6e-83 ref|YP_002945928.1| cytochrome o ubiquinol oxidase subunit III [... 310 6e-83 ref|YP_004156987.1| cytochrome o ubiquinol oxidase subunit iii [... 309 2e-82 ref|ZP_01915178.1| cytochrome o ubiquinol oxidase, subunit III [... 308 2e-82 >ref|YP_003775869.1| cytochrome o ubiquinol oxidase subunit III protein [Herbaspirillum seropedicae SmR1] gb|ADJ63961.1| cytochrome o ubiquinol oxidase subunit III protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/208 (100%), Positives = 208/208 (100%) Query: 1 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG Sbjct: 1 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60 Query: 61 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL 120 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL Sbjct: 61 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL 120 Query: 121 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL 180 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL Sbjct: 121 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL 180 Query: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 MCLSMFWHFLDVVWIGVFTFVYLMGVLP Sbjct: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 >ref|YP_004752856.1| cytochrome O ubiquinol oxidase subunit III [Collimonas fungivorans Ter331] gb|AEK62033.1| Cytochrome O ubiquinol oxidase subunit III [Collimonas fungivorans Ter331] Length = 218 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 165/204 (80%), Positives = 183/204 (89%) Query: 5 INHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGA 64 +N + A PS+R++ R HHPENGTLLGFW+YLMSDCLIFACLFA YAVLGRNYAGGPTGA Sbjct: 15 MNTNSAADPSARFYTREHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYAGGPTGA 74 Query: 65 ELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFL 124 ELFDLPLVA+NT+LLLLSSITYGFAML MQ K+Q T+ WL +TG+LGA FI FELYEF+ Sbjct: 75 ELFDLPLVAVNTSLLLLSSITYGFAMLEMQRKRQGATLAWLAVTGILGACFIGFELYEFV 134 Query: 125 HLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLS 184 HLIHEGAGP RSGFLTSFFALV THGLHV+FGI+WLV L+FQ+ +HGLT NGRRLMCLS Sbjct: 135 HLIHEGAGPQRSGFLTSFFALVATHGLHVSFGIVWLVTLMFQVKRHGLTAENGRRLMCLS 194 Query: 185 MFWHFLDVVWIGVFTFVYLMGVLP 208 MFWHFLDVVWIGVFTFVYLMGVLP Sbjct: 195 MFWHFLDVVWIGVFTFVYLMGVLP 218 >ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] gb|ABR89095.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] Length = 210 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/210 (78%), Positives = 180/210 (85%), Gaps = 2/210 (0%) Query: 1 MSEAINHTA--DATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYA 58 MSE +++ A PS+RY+V+ HHPENGTLLGFW+YLMSDCLIFACLFA YAVLGRNYA Sbjct: 1 MSEITANSSALSADPSARYYVQEHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYA 60 Query: 59 GGPTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYF 118 GGPTGAELFDLPLVA NTA LLLSSITYGFAML Q K+ + T+ WL ITGLLGA F+ Sbjct: 61 GGPTGAELFDLPLVAANTAFLLLSSITYGFAMLEAQRKRLKATMIWLAITGLLGAAFLAL 120 Query: 119 ELYEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGR 178 ELYEF HLIHEGAGP RS FLTSFFALV THGLHVTFGIIWL+ L+FQ+ +HGL NGR Sbjct: 121 ELYEFSHLIHEGAGPQRSAFLTSFFALVATHGLHVTFGIIWLITLMFQLKRHGLIPENGR 180 Query: 179 RLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 RLMCLSMFWHFLDV+WIGVFTFVYLMGVLP Sbjct: 181 RLMCLSMFWHFLDVIWIGVFTFVYLMGVLP 210 >ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] gb|EGF30240.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] Length = 202 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 157/201 (78%), Positives = 175/201 (87%) Query: 8 TADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELF 67 T+ T S+RY+V HHPENGT LGFW+YLMSDCL+FA LFA YAVLGRNYAGGPTGAELF Sbjct: 2 TSPTTDSTRYYVLEHHPENGTTLGFWLYLMSDCLVFAALFAVYAVLGRNYAGGPTGAELF 61 Query: 68 DLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLI 127 DLPLVALNTA LL+SSITYGFAML MQ K+ ++T+ W+ ITGL+GA FI E+YEF+HLI Sbjct: 62 DLPLVALNTAFLLVSSITYGFAMLEMQRKRVRSTLIWMGITGLIGACFIGLEMYEFIHLI 121 Query: 128 HEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFW 187 HEGAGP RSGFLT+FF LVGTHGLHV FGIIWLV L+ Q++ HGLT N RRLMCLSMFW Sbjct: 122 HEGAGPQRSGFLTAFFTLVGTHGLHVMFGIIWLVTLMLQVSVHGLTTENSRRLMCLSMFW 181 Query: 188 HFLDVVWIGVFTFVYLMGVLP 208 HFLDVVWIGVFTFVYLMGVLP Sbjct: 182 HFLDVVWIGVFTFVYLMGVLP 202 >ref|YP_001100943.1| cytochrome o ubiquinol oxidase subunit III [Herminiimonas arsenicoxydans] emb|CAL62822.1| Cytochrome o ubiquinol oxidase subunit 3 (Cytochrome o ubiquinol oxidase subunit III) [Herminiimonas arsenicoxydans] Length = 214 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 155/207 (74%), Positives = 174/207 (84%) Query: 2 SEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGP 61 S I+ + A S+RY+V+ HHPE+ T LGFWIYLMSDCLIFACLFA YAVLGR+YAGGP Sbjct: 8 SADISAMSSADASTRYYVKEHHPESSTSLGFWIYLMSDCLIFACLFATYAVLGRSYAGGP 67 Query: 62 TGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELY 121 TGAELFDLPLVA+NTA LL+SSITYG AML + ++T+ WL ITG+LGAGF+ ELY Sbjct: 68 TGAELFDLPLVAMNTAFLLVSSITYGVAMLEAHRNRVRSTLIWLAITGMLGAGFLALELY 127 Query: 122 EFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLM 181 EF HLIHEGAGP S FLTSFFALVGTHGLHVTFGIIWL+VL+FQ+ K GL N RRLM Sbjct: 128 EFNHLIHEGAGPQTSAFLTSFFALVGTHGLHVTFGIIWLIVLMFQVGKFGLNVENKRRLM 187 Query: 182 CLSMFWHFLDVVWIGVFTFVYLMGVLP 208 CLSMFWHFLDV+WIGVFTFVYLMGVLP Sbjct: 188 CLSMFWHFLDVIWIGVFTFVYLMGVLP 214 >ref|YP_729183.1| bo3-type chinol oxidase, subunit III [Ralstonia eutropha H16] emb|CAJ95818.1| bo3-type chinol oxidase, subunit III [Ralstonia eutropha H16] Length = 218 Score = 311 bits (796), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 155/204 (75%), Positives = 167/204 (81%), Gaps = 3/204 (1%) Query: 8 TADATPSSRY---FVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGA 64 TADA P Y HHP+NGTLLGFW+YLMSDCLIFACLFA Y VLGR YAGGP+GA Sbjct: 15 TADAAPPGGYQFYLPEDHHPQNGTLLGFWLYLMSDCLIFACLFAAYGVLGREYAGGPSGA 74 Query: 65 ELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFL 124 ELF+LPLVALNT+ LLLSSITYGFAML MQ + T WL ITG+ GAGF+ ELYEF Sbjct: 75 ELFELPLVALNTSFLLLSSITYGFAMLQMQQNRIAGTQIWLAITGVFGAGFLAVELYEFA 134 Query: 125 HLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLS 184 HLI+EGAGP RS FLTSFFALVGTHGLHVT GIIWLVVL+ Q+ +HGL AN RRLMCLS Sbjct: 135 HLINEGAGPQRSAFLTSFFALVGTHGLHVTCGIIWLVVLMTQVAQHGLITANKRRLMCLS 194 Query: 185 MFWHFLDVVWIGVFTFVYLMGVLP 208 MFWHFLDVVWIGVFTFVYLMG LP Sbjct: 195 MFWHFLDVVWIGVFTFVYLMGALP 218 >ref|YP_001020936.1| cytochrome ubiquinol oxidase subunit III [Methylibium petroleiphilum PM1] gb|ABM94701.1| cytochrome ubiquinol oxidase subunit III [Methylibium petroleiphilum PM1] Length = 215 Score = 310 bits (795), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 152/209 (72%), Positives = 174/209 (83%), Gaps = 1/209 (0%) Query: 1 MSEAINHTADATPSSRY-FVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAG 59 ++ A+ TA AT + R+ V HH ENGTLLGFW+YLMSDCLIFACLFA + VLGR+YAG Sbjct: 7 LAPALPGTAGATATPRFHVVGEHHVENGTLLGFWLYLMSDCLIFACLFAVHGVLGRSYAG 66 Query: 60 GPTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFE 119 GP+GAELFDL LVA+NT+LLLLSSITYGFAM+ MQ ++Q T+ WL ITGL GAGFI E Sbjct: 67 GPSGAELFDLKLVAINTSLLLLSSITYGFAMIEMQRRRQGATLLWLAITGLFGAGFIGLE 126 Query: 120 LYEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRR 179 LYEF HLIHEGA P RS FL+SFF LVGTHGLHV+FG++WLV L+ Q+ +HGL N RR Sbjct: 127 LYEFAHLIHEGAVPQRSAFLSSFFTLVGTHGLHVSFGVVWLVTLMVQVGRHGLVAENRRR 186 Query: 180 LMCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 LMCLSMFWHFLDVVWIGVFTFVYLMGVLP Sbjct: 187 LMCLSMFWHFLDVVWIGVFTFVYLMGVLP 215 >ref|YP_002945928.1| cytochrome o ubiquinol oxidase subunit III [Variovorax paradoxus S110] gb|ACS20662.1| cytochrome o ubiquinol oxidase, subunit III [Variovorax paradoxus S110] Length = 221 Score = 310 bits (795), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 156/212 (73%), Positives = 173/212 (81%), Gaps = 6/212 (2%) Query: 2 SEAINHT-ADATPSSRYFV-----RHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGR 55 S A H +DAT F HHPENGTLLGFW+YLMSDCL+FACLFA Y VLGR Sbjct: 9 SPAAGHAHSDATGKPPVFELFHVGNDHHPENGTLLGFWLYLMSDCLVFACLFAVYGVLGR 68 Query: 56 NYAGGPTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGF 115 +YA GP+GA+LFDLPLVA+NT+LLLLSSITYGFA+L MQ K+ T+ WL ITGLLGAGF Sbjct: 69 SYAAGPSGADLFDLPLVAVNTSLLLLSSITYGFAVLEMQRKRMGGTLAWLAITGLLGAGF 128 Query: 116 IYFELYEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEA 175 I ELYEF HLIHEGAGP RS FL+SFFALVGTHGLHVTFGI+WL+VL+ Q+ KHG T A Sbjct: 129 IGLELYEFAHLIHEGAGPQRSAFLSSFFALVGTHGLHVTFGIVWLIVLMIQLPKHGFTAA 188 Query: 176 NGRRLMCLSMFWHFLDVVWIGVFTFVYLMGVL 207 N RRLMCLSMFWHFLDVVWIGVFTFVYLMG + Sbjct: 189 NRRRLMCLSMFWHFLDVVWIGVFTFVYLMGSM 220 >ref|YP_004156987.1| cytochrome o ubiquinol oxidase subunit iii [Variovorax paradoxus EPS] gb|ADU38876.1| cytochrome o ubiquinol oxidase, subunit III [Variovorax paradoxus EPS] Length = 221 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 149/186 (80%), Positives = 164/186 (88%) Query: 22 HHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLPLVALNTALLLL 81 HHPENGTLLGFW+YLMSDCLIFACLFA Y VLGR+YA GP+GA+LFDLPLVA+NT+LLLL Sbjct: 35 HHPENGTLLGFWLYLMSDCLIFACLFAVYGVLGRSYAAGPSGADLFDLPLVAINTSLLLL 94 Query: 82 SSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGPTRSGFLTS 141 SSITYGFAML MQ K+ + WL ITGLLGAGFI ELYEF HL+HEGAGP RS FL+S Sbjct: 95 SSITYGFAMLEMQKKRMGGVLVWLAITGLLGAGFIGLELYEFAHLLHEGAGPQRSAFLSS 154 Query: 142 FFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHFLDVVWIGVFTFV 201 FFALVGTHGLHV+FGIIWL+VL+ Q+ KHG T AN RRLMCLSMFWHFLDVVWIGVFTFV Sbjct: 155 FFALVGTHGLHVSFGIIWLIVLMIQLPKHGFTAANRRRLMCLSMFWHFLDVVWIGVFTFV 214 Query: 202 YLMGVL 207 YLMG + Sbjct: 215 YLMGSM 220 >ref|ZP_01915178.1| cytochrome o ubiquinol oxidase, subunit III [Limnobacter sp. MED105] gb|EDM83689.1| cytochrome o ubiquinol oxidase, subunit III [Limnobacter sp. MED105] Length = 207 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/208 (73%), Positives = 171/208 (82%), Gaps = 1/208 (0%) Query: 1 MSEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGG 60 MS+ + A PS+RY+V+ HHP+NG+ LGFWIYLMSDCLIFACLFA YAV+GRNYAGG Sbjct: 1 MSD-LTMNAPTDPSARYYVKDHHPKNGSSLGFWIYLMSDCLIFACLFATYAVIGRNYAGG 59 Query: 61 PTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFEL 120 PTGAE+FDL LVALNTA LLLSSITYG AM+ MQ + + TI WL ITG+LG F+ E+ Sbjct: 60 PTGAEIFDLNLVALNTAFLLLSSITYGVAMVGMQNRNVKKTIQWLAITGVLGLAFLAVEI 119 Query: 121 YEFLHLIHEGAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRL 180 YEF H I GA P SGFLT+FFALVGTHGLHV FGIIWLVVLLFQ+ KHGL N RR+ Sbjct: 120 YEFWHFISIGATPQTSGFLTAFFALVGTHGLHVFFGIIWLVVLLFQLKKHGLIVENRRRV 179 Query: 181 MCLSMFWHFLDVVWIGVFTFVYLMGVLP 208 MCLSMFWHFLDV+WIGVFTFVYLMGVLP Sbjct: 180 MCLSMFWHFLDVIWIGVFTFVYLMGVLP 207