BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0120.p (174 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775886.1| TetR family transcription regulator protein ... 350 5e-95 ref|ZP_08866159.1| putative transcriptional regulator [Desulfovi... 150 8e-35 ref|YP_002955439.1| TetR family transcriptional regulator [Desul... 148 3e-34 ref|YP_001392926.1| TetR family transcriptional regulator [Clost... 130 6e-29 ref|YP_001307880.1| TetR family transcriptional regulator [Clost... 129 1e-28 ref|ZP_02618317.1| transcriptional regulator, TetR family [Clost... 128 3e-28 ref|YP_001256053.1| TetR family transcriptional regulator [Clost... 127 4e-28 ref|ZP_02615705.1| transcriptional regulator, TetR family [Clost... 127 4e-28 ref|ZP_02993919.1| hypothetical protein CLOSPO_01013 [Clostridiu... 127 5e-28 ref|YP_003008977.1| TetR family transcriptional regulator [Paeni... 126 1e-27 >ref|YP_003775886.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63978.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 174/174 (100%), Positives = 174/174 (100%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD Sbjct: 66 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 125 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG Sbjct: 126 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 185 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLPSLMDT 174 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLPSLMDT Sbjct: 186 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLPSLMDT 239 >ref|ZP_08866159.1| putative transcriptional regulator [Desulfovibrio sp. A2] gb|EGY25301.1| putative transcriptional regulator [Desulfovibrio sp. A2] Length = 199 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 73/169 (43%), Positives = 107/169 (63%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +LEE+G+ +L++EG+A+RAGV KAT+YRWWP K A+AMEA + A +P + S+ D Sbjct: 30 LLEEVGYARLTMEGIASRAGVSKATLYRWWPGKGAVAMEAFMDATKPRIDFPHTDSAVAD 89 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + M L+++ RG +GR+VRE+I L Q +P++ F ++YL PRR A LRRG +G Sbjct: 90 VTAQMHLLAEVYRGVTGRLVRELIGLGQGDPQTLAAFVESYLLPRRAAAKDALRRGIAQG 149 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSITLP 169 E R D DL L+ D LYAP+ RLL G +D+ ++ + LP Sbjct: 150 ELRPDIDLELLVDALYAPIFHRLLLQHGPLDDAFIRGIAASAFAPVLLP 198 >ref|YP_002955439.1| TetR family transcriptional regulator [Desulfovibrio magneticus RS-1] dbj|BAH77553.1| TetR family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 197 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/166 (45%), Positives = 104/166 (62%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E+GF L++EG+AARAGVGKAT+YRWWP+K A+AMEA L + P + + D Sbjct: 29 LLAEVGFAGLTMEGIAARAGVGKATVYRWWPSKGAVAMEAFLAGLTPRIAYPHTDCAVDD 88 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + ML+L++ RG GRVV E+IAL Q +PE+ +F D YL PRR A VLRRG G Sbjct: 89 VVTQMLRLAEAYRGAGGRVVCELIALGQADPEAMAVFLDGYLLPRREAGKEVLRRGVAAG 148 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSI 166 + R DADL + D LYAP+ R+L +D+ ++ LV + Sbjct: 149 QIRPDADLDAMVDALYAPIFLRILLRHQPLDDDFIRHVADLVFSGL 194 >ref|YP_001392926.1| TetR family transcriptional regulator [Clostridium botulinum F str. Langeland] gb|ABS41270.1| transcriptional regulator, TetR family [Clostridium botulinum F str. Langeland] gb|ADG01280.1| transcriptional regulator, TetR family [Clostridium botulinum F str. 230613] Length = 190 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 64/152 (42%), Positives = 93/152 (61%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E GF +++E +A RAGV KATIY+WWPNK+A+ M+A A PI D+GS+ D Sbjct: 24 LLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVMDAFFDAAVVRLPIPDTGSTIND 83 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + + + L++ L + G+V+ E+IA QF + + Y +PRRL +L RG RG Sbjct: 84 MIIQVNNLAKFLISREGKVINEIIAEGQFNQKLAEAYRAIYFKPRRLDSQYILERGISRG 143 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDE 152 E +ED D+ LV DL++ PL RLL +DE Sbjct: 144 ELKEDLDIELVIDLIFGPLFYRLLITGDMVDE 175 >ref|YP_001307880.1| TetR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gb|ABR32924.1| transcriptional regulator, TetR family [Clostridium beijerinckii NCIMB 8052] Length = 192 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 96/167 (57%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E GF +++E +A +AGV KATIY+WW NK+A+ M+A A P+ D+GS+ D Sbjct: 24 LLLESGFGSVTIEKIAEKAGVSKATIYKWWSNKAAVVMDAFFDAAVVRLPVPDTGSTMDD 83 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 I + + L+ L + G+V+ E+IA Q + + + Y +PRRL +L RG RG Sbjct: 84 IIIQVNNLANFLTSREGKVINEIIAEGQSDQKLAETYRTVYFKPRRLDSRYILERGISRG 143 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQAQLKLVLGSIT 167 E +ED D+ LV DL++ PL RLL +DE ++ + IT Sbjct: 144 ELKEDLDIELVMDLVFGPLFYRLLITGDIVDENFIRNMVTCAFNGIT 190 >ref|ZP_02618317.1| transcriptional regulator, TetR family [Clostridium botulinum Bf] ref|YP_002864585.1| TetR family transcriptional regulator [Clostridium botulinum Ba4 str. 657] gb|EDT85171.1| transcriptional regulator, TetR family [Clostridium botulinum Bf] gb|ACQ53124.1| transcriptional regulator, TetR family [Clostridium botulinum Ba4 str. 657] Length = 190 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 94/156 (60%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E F +++E +A RAGV KATIY+WWPNK+A+ M+A A PI D+GS+ D Sbjct: 24 LLLENSFGAVTVEKIAERAGVSKATIYKWWPNKAAVVMDAFFDAAVVRLPIPDTGSTIND 83 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + + + L++ L + G+V+ E+IA QF + + Y +PRRL +L RG RG Sbjct: 84 MIIQVNNLAKFLISREGKVINEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRG 143 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 156 E +ED D+ LV DL++ PL RLL +DE ++ Sbjct: 144 ELKEDLDIELVIDLIFGPLFYRLLITGDMVDEAFIK 179 >ref|YP_001256053.1| TetR family transcriptional regulator [Clostridium botulinum A str. ATCC 3502] ref|YP_001385887.1| TetR family transcriptional regulator [Clostridium botulinum A str. ATCC 19397] ref|YP_001389294.1| TetR family transcriptional regulator [Clostridium botulinum A str. Hall] ref|YP_001783211.1| TetR family transcriptional regulator [Clostridium botulinum B1 str. Okra] emb|CAL85133.1| TetR-family transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gb|ABS33709.1| transcriptional regulator, TetR family [Clostridium botulinum A str. ATCC 19397] gb|ABS38600.1| transcriptional regulator, TetR family [Clostridium botulinum A str. Hall] gb|ACA46281.1| transcriptional regulator, TetR family [Clostridium botulinum B1 str. Okra] Length = 190 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 95/156 (60%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E GF +++E +A RAGV KATIY+WWPNK+A+ ++A A PI D+GS+ D Sbjct: 24 LLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVIDAFFDAAVVRLPIPDTGSTIND 83 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + + + L++ L + G+V+ E+IA QF + + Y +PRRL +L RG RG Sbjct: 84 MIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRG 143 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 156 E +ED D+ LV DL++ PL RLL +DE ++ Sbjct: 144 ELKEDLDIELVIDLIFGPLFYRLLITGDMVDEAFIK 179 >ref|ZP_02615705.1| transcriptional regulator, TetR family [Clostridium botulinum NCTC 2916] ref|YP_002806119.1| TetR family transcriptional regulator [Clostridium botulinum A2 str. Kyoto] gb|EDT80119.1| transcriptional regulator, TetR family [Clostridium botulinum NCTC 2916] gb|ACO85442.1| transcriptional regulator, TetR family [Clostridium botulinum A2 str. Kyoto] Length = 190 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 95/156 (60%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E GF +++E +A RAGV KATIY+WWPNK+A+ ++A A PI D+GS+ D Sbjct: 24 LLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVIDAFFDAAVVRLPIPDTGSTIND 83 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + + + L++ L + G+V+ E+IA QF + + Y +PRRL +L RG RG Sbjct: 84 MIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRG 143 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 156 E +ED D+ LV DL++ PL RLL +DE ++ Sbjct: 144 ELKEDLDIELVIDLIFGPLFYRLLITGDMVDEAFIK 179 >ref|ZP_02993919.1| hypothetical protein CLOSPO_01013 [Clostridium sporogenes ATCC 15579] gb|EDU38176.1| hypothetical protein CLOSPO_01013 [Clostridium sporogenes ATCC 15579] Length = 195 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 92/151 (60%) Query: 6 GFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTDIELHM 65 GF +++E +A RAGV KATIY+WWPNK+A+ M+A A PI D+GS+ D+ + + Sbjct: 34 GFGAVTVEKIAERAGVSKATIYKWWPNKAAVVMDAFFDAAVVRLPIPDTGSTINDMIIQV 93 Query: 66 LQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFRED 125 L++ L + G+V+ E+IA QF + + Y +PRRL +L RG RGE +ED Sbjct: 94 NNLAKFLISREGKVINEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRGELKED 153 Query: 126 ADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 156 D+ LV DL++ PL RLL ++E ++ Sbjct: 154 LDIELVIDLIFGPLFYRLLITGDMVNEAFIK 184 >ref|YP_003008977.1| TetR family transcriptional regulator [Paenibacillus sp. JDR-2] gb|ACS98890.1| transcriptional regulator, TetR family [Paenibacillus sp. JDR-2] Length = 195 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 92/156 (58%) Query: 1 MLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSALAMEALLRAVEPMPPIGDSGSSRTD 60 +L E GF+ +++E +A RA V KATIY+WWPNK+A+ M+ L A P+ D+G+ +D Sbjct: 24 LLLESGFEMVTVEKIAERAKVSKATIYKWWPNKAAVVMDGFLFAASARLPVPDTGAVFSD 83 Query: 61 IELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRIFNDNYLEPRRLALVSVLRRGAQRG 120 + +H + + L GRV+RE++ QF+ + Y PRR+ S+L RG QRG Sbjct: 84 VLIHASNVVRFLTSPEGRVIRELVGQGQFDEGLAEAYRTRYFGPRRIEAGSLLERGIQRG 143 Query: 121 EFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 156 E ++D D+ L DL+Y P RLL ++ E V+ Sbjct: 144 ELKKDLDIGLAIDLIYGPFFYRLLITGEELTEAYVR 179