BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0102.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775901.1| two component response regulator protein [He... 311 3e-83 ref|YP_001857226.1| response regulator receiver protein [Burkhol... 210 6e-53 ref|YP_004029458.1| Two-component response regulator [Burkholder... 207 6e-52 ref|YP_003605023.1| response regulator receiver protein [Burkhol... 207 6e-52 ref|ZP_02883537.1| response regulator receiver protein [Burkhold... 205 2e-51 ref|ZP_03269446.1| response regulator receiver protein [Burkhold... 204 3e-51 ref|YP_003906841.1| response regulator receiver protein [Burkhol... 203 8e-51 ref|YP_004228220.1| response regulator receiver protein [Burkhol... 203 8e-51 ref|YP_001895501.1| response regulator receiver protein [Burkhol... 202 1e-50 ref|ZP_06840641.1| response regulator receiver protein [Burkhold... 201 2e-50 >ref|YP_003775901.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63993.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ Sbjct: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60 Query: 61 LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120 LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV Sbjct: 61 LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120 Query: 121 EYEDFIEAIRRLGFFLQVVKLPGLAAAQKGPEQP 154 EYEDFIEAIRRLGFFLQVVKLPGLAAAQKGPEQP Sbjct: 121 EYEDFIEAIRRLGFFLQVVKLPGLAAAQKGPEQP 154 >ref|YP_001857226.1| response regulator receiver protein [Burkholderia phymatum STM815] gb|ACC70180.1| response regulator receiver protein [Burkholderia phymatum STM815] Length = 162 Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 106/150 (70%), Positives = 120/150 (80%), Gaps = 9/150 (6%) Query: 2 ATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLF---------DPQ 52 A +SV I+LVEDDDGHA LVE+NLRRAG+ NGFVRL DGQ+ALDY F D + Sbjct: 5 AIGKSVGIVLVEDDDGHATLVERNLRRAGISNGFVRLADGQQALDYFFGEPCAGDRTDGR 64 Query: 53 RSRTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGC 112 SR EL VVLLD+ MPRV+G EVLRRLKA P +++PVI+LTTTDDPREI RCYE GC Sbjct: 65 PSRDELANYVVLLDLKMPRVDGFEVLRRLKASPSTASMPVIVLTTTDDPREIERCYELGC 124 Query: 113 NVYITKPVEYEDFIEAIRRLGFFLQVVKLP 142 NVYITKPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 125 NVYITKPVEYDAFIEAVRRLGFFLQVVKLP 154 >ref|YP_004029458.1| Two-component response regulator [Burkholderia rhizoxinica HKI 454] emb|CBW75314.1| Two-component response regulator [Burkholderia rhizoxinica HKI 454] Length = 153 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 101/142 (71%), Positives = 118/142 (83%), Gaps = 1/142 (0%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60 M ++V+IIL+EDDDGHA LVE+NLRRAGL NGF RL DG +ALDY F P+ +L+ Sbjct: 5 MTIGETVSIILIEDDDGHATLVERNLRRAGLTNGFKRLSDGHQALDYFFGPE-PLGDLRN 63 Query: 61 LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120 VVLLD+ MPRV+GVEVLRRLK P +++PVI+LTTTDDPREI RCYE GCNVYITKPV Sbjct: 64 CVVLLDLKMPRVDGVEVLRRLKESPQTASLPVIVLTTTDDPREIERCYELGCNVYITKPV 123 Query: 121 EYEDFIEAIRRLGFFLQVVKLP 142 EY+ FIEA+RRLGFFLQVVKLP Sbjct: 124 EYDAFIEAVRRLGFFLQVVKLP 145 >ref|YP_003605023.1| response regulator receiver protein [Burkholderia sp. CCGE1002] gb|ADG15512.1| response regulator receiver protein [Burkholderia sp. CCGE1002] Length = 163 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 102/155 (65%), Positives = 117/155 (75%), Gaps = 13/155 (8%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRS------ 54 M Q+V+I+L+EDDDGH LVE+NLRRAG+ NGFVR RDGQ+ALDY FDP R+ Sbjct: 1 MNHAQTVSIVLIEDDDGHTTLVERNLRRAGISNGFVRFRDGQQALDYFFDPARAQPLADA 60 Query: 55 -------RTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRC 107 R L VVLLD+ MPRV+G EVLRRLK P +A+PVI+LTTTDDPREI RC Sbjct: 61 DCHPYPPRENLANFVVLLDLKMPRVDGFEVLRRLKEAPETAAVPVIVLTTTDDPREIARC 120 Query: 108 YEYGCNVYITKPVEYEDFIEAIRRLGFFLQVVKLP 142 YE GCNVYI KPVEY+ FIEA+RRLG FLQVVKLP Sbjct: 121 YELGCNVYICKPVEYDAFIEAVRRLGLFLQVVKLP 155 >ref|ZP_02883537.1| response regulator receiver protein [Burkholderia graminis C4D1M] gb|EDT10969.1| response regulator receiver protein [Burkholderia graminis C4D1M] Length = 161 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/153 (65%), Positives = 118/153 (77%), Gaps = 10/153 (6%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRT---- 56 M+ ++V+I+L+EDDDGHA LVE+NLRRAG+ NGFVR RDGQ+ALDY F Q Sbjct: 1 MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGAQTDSESAPG 60 Query: 57 ------ELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEY 110 +L+ VVLLD+ MPRV+G EVLRRLK P + +PVI+LTTTDDPREI RCYE Sbjct: 61 AHPDAEDLRNSVVLLDLKMPRVDGFEVLRRLKESPQTAPVPVIVLTTTDDPREIARCYEL 120 Query: 111 GCNVYITKPVEYEDFIEAIRRLGFFLQVVKLPG 143 GCNVYITKPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 121 GCNVYITKPVEYDAFIEAVRRLGFFLQVVKLPS 153 >ref|ZP_03269446.1| response regulator receiver protein [Burkholderia sp. H160] gb|EDZ98963.1| response regulator receiver protein [Burkholderia sp. H160] Length = 163 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/155 (65%), Positives = 117/155 (75%), Gaps = 13/155 (8%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRS------ 54 M Q+V+I+L+EDDDGHA LVE+NLRRAG+ NGF+R RDGQ+ALDY F P + Sbjct: 1 MNHAQTVSIVLIEDDDGHATLVERNLRRAGISNGFMRFRDGQQALDYFFGPAPAQPLTDA 60 Query: 55 -------RTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRC 107 R L VVLLD+ MPRV+G EVLRRLK P +A+PVI+LTTTDDPREI RC Sbjct: 61 DGHPYPPRENLANFVVLLDLKMPRVDGFEVLRRLKEAPETAAVPVIVLTTTDDPREIARC 120 Query: 108 YEYGCNVYITKPVEYEDFIEAIRRLGFFLQVVKLP 142 YE GCNVYI KPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 121 YELGCNVYICKPVEYDAFIEAVRRLGFFLQVVKLP 155 >ref|YP_003906841.1| response regulator receiver protein [Burkholderia sp. CCGE1003] gb|ADN57550.1| response regulator receiver protein [Burkholderia sp. CCGE1003] Length = 161 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 101/152 (66%), Positives = 120/152 (78%), Gaps = 10/152 (6%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLF--DPQRSRT-- 56 M+ ++V+I+L+EDDDGHA LVE+NLRRAG+ NGFVR RDGQ+ALDY F D Q T Sbjct: 1 MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGTDAQGGGTPG 60 Query: 57 ------ELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEY 110 +L+ VVLLD+ MPRV+G EVLRRLK P + +PVI+LTTTDDPRE+ RCYE Sbjct: 61 VHPQPEDLRNSVVLLDLKMPRVDGFEVLRRLKDSPQTAPVPVIVLTTTDDPREVARCYEL 120 Query: 111 GCNVYITKPVEYEDFIEAIRRLGFFLQVVKLP 142 GCNVYITKPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 121 GCNVYITKPVEYDAFIEAVRRLGFFLQVVKLP 152 >ref|YP_004228220.1| response regulator receiver protein [Burkholderia sp. CCGE1001] gb|ADX55160.1| response regulator receiver protein [Burkholderia sp. CCGE1001] Length = 161 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 101/154 (65%), Positives = 119/154 (77%), Gaps = 14/154 (9%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLF----------- 49 M+ ++V+I+L+EDDDGHA LVE+NLRRAG+ NGFVR RDGQ+ALDY F Sbjct: 1 MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGGEAGGESAPG 60 Query: 50 -DPQRSRTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCY 108 PQ +L+ VVLLD+ MPRV+G EVLRRLK P + +PVI+LTTTDDPREI RCY Sbjct: 61 AHPQPE--DLRNSVVLLDLKMPRVDGFEVLRRLKESPQTAPVPVIVLTTTDDPREIARCY 118 Query: 109 EYGCNVYITKPVEYEDFIEAIRRLGFFLQVVKLP 142 E GCNVYITKPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 119 ELGCNVYITKPVEYDAFIEAVRRLGFFLQVVKLP 152 >ref|YP_001895501.1| response regulator receiver protein [Burkholderia phytofirmans PsJN] gb|ACD16277.1| response regulator receiver protein [Burkholderia phytofirmans PsJN] Length = 169 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 102/162 (62%), Positives = 119/162 (73%), Gaps = 19/162 (11%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQR------- 53 M ++V+I+L+EDDDGHA LVE+NLRRAG+ NGFVR RDGQ+ALDY F P Sbjct: 1 MNHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFRDGQQALDYFFGPAPSPADAAA 60 Query: 54 ------------SRTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDP 101 +R +L VVLLD+ MPRV+G EVLRRLK P +A+PVI+LTTTDDP Sbjct: 61 GCAAEPAQSAVPAREDLLNFVVLLDLKMPRVDGFEVLRRLKESPQTAAVPVIVLTTTDDP 120 Query: 102 REIGRCYEYGCNVYITKPVEYEDFIEAIRRLGFFLQVVKLPG 143 REI RCYE GCNVYITKPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 121 REIARCYELGCNVYITKPVEYDAFIEAVRRLGFFLQVVKLPS 162 >ref|ZP_06840641.1| response regulator receiver protein [Burkholderia sp. Ch1-1] gb|EFG71837.1| response regulator receiver protein [Burkholderia sp. Ch1-1] Length = 167 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/160 (63%), Positives = 119/160 (74%), Gaps = 17/160 (10%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRS------ 54 M+ ++V+I+L+EDDDGHA LVE+NLRRAG+ NGFVR DGQ+ALDY F P + Sbjct: 1 MSHGETVSIVLIEDDDGHATLVERNLRRAGISNGFVRFHDGQQALDYFFGPAPADAAASS 60 Query: 55 -----------RTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPRE 103 R +L VVLLD+ MPRV+G EVLRRLK P +A+PVI+LTTTDDPRE Sbjct: 61 ATAPAANAYPPREDLMNFVVLLDLKMPRVDGFEVLRRLKESPQTAAVPVIVLTTTDDPRE 120 Query: 104 IGRCYEYGCNVYITKPVEYEDFIEAIRRLGFFLQVVKLPG 143 I RCYE GCNVYITKPVEY+ FIEA+RRLGFFLQVVKLP Sbjct: 121 IARCYELGCNVYITKPVEYDAFIEAVRRLGFFLQVVKLPS 160