BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0068.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775934.1| response regulator transcription regulator p... 480 e-134 ref|YP_002495411.1| winged helix family two component transcript... 273 1e-71 ref|YP_002912035.1| winged helix family two component transcript... 257 9e-67 ref|YP_004360299.1| Two component transcriptional regulator, win... 256 2e-66 gb|EGD02019.1| two component transcriptional regulator [Burkhold... 251 5e-65 ref|YP_373281.1| two component transcriptional regulator [Burkho... 250 1e-64 ref|ZP_02381073.1| two component transcriptional regulator, wing... 250 1e-64 ref|YP_001767079.1| two component transcriptional regulator [Met... 250 1e-64 ref|YP_001585059.1| two component transcriptional regulator [Bur... 250 1e-64 ref|YP_001777572.1| two component transcriptional regulator [Bur... 249 2e-64 >ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust. Identities = 237/239 (99%), Positives = 238/239 (99%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLSESYDLLILDVMLPQQDGFS 60 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHA+RRLSESYDLLILDVMLPQQDGFS Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESYDLLILDVMLPQQDGFS 60 Query: 61 LLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGG 120 LLQQLRTRG HTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGG Sbjct: 61 LLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGG 120 Query: 121 ESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV 180 ESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV Sbjct: 121 ESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV 180 Query: 181 DDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTSPLH 239 DDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTSPLH Sbjct: 181 DDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTSPLH 239 >ref|YP_002495411.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL55108.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 141/225 (62%), Positives = 175/225 (77%), Gaps = 3/225 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRILLVEDT DV EAIV L +GH V+WE +GA + L + YDL+ILDV LP DGF Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+++R R TPVL+LTA +EV++RV ALDLGADDYLVKPFDFREL+AR+R LLRR Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + N + C NLS+DR +RSA++ GQP++LTRRE TL+EI+AARPGRIF K EL+DRL T Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAF--EIRTLRGLGYQLVLHAP 222 ++ PS N++EQ VARLR+KLA A EIRTLRGLGYQ+V P Sbjct: 181 FEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQVVCPEP 225 >ref|YP_002912035.1| winged helix family two component transcriptional regulator [Burkholderia glumae BGR1] gb|ACR29331.1| Two component transcriptional regulator, winged helix family [Burkholderia glumae BGR1] Length = 221 Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 125/218 (57%), Positives = 171/218 (78%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+VED A++ EAI + L R+GH V+ E +GA A+ L ES+DL++LDVMLP DGF Sbjct: 1 MRILVVEDDAEIGEAIGSRLTRLGHAVDLERDGAAASSLLGVESFDLVVLDVMLPSLDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 S+L++LR G TPVL++TA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 SVLRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++++L +LSIDR SR A LDGQP+ L+R+E LLEI+A+RP R+F+KDEL+++LF+ Sbjct: 121 GHASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 PSAN+VEQYV R+R+KL + EIRT RG+GYQ+ Sbjct: 181 FGREPSANAVEQYVTRVRRKLQGSDVEIRTARGMGYQI 218 >ref|YP_004360299.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gb|AEA60343.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 221 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/218 (56%), Positives = 170/218 (77%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+VED A++ EAI + L R+GH V+ E +GA A+ L ES+DL++LDVMLP DGF Sbjct: 1 MRILVVEDDAEIGEAIGSRLTRLGHAVDLECDGAAASSLLGVESFDLVVLDVMLPSMDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L++LR G TPVL++TA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 AILRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++++L LSIDR SR A LDGQP+ L+R+E LLEI+A+RP R+F+KDEL+++LF+ Sbjct: 121 GHASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 PSAN+VEQYV R+R+KL + EIRT RG+GYQ+ Sbjct: 181 FGREPSANAVEQYVTRVRRKLQGSDVEIRTARGMGYQI 218 >gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 121/218 (55%), Positives = 169/218 (77%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+VED A++ A+ + L R+GH V+ E++GA AN L E +DL++LDVMLP DGF Sbjct: 1 MRILVVEDDAEIGAAVRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDVMLPGLDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+ LR G TPVL+LTA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 AVLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + ++L L IDR SR A LDGQP+ L+R+E LLEI+A+RP RIF+K+EL+++LF+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 + P+AN+VEQYV R+R+KL+ ++ EIRT RG+GYQ+ Sbjct: 181 FGNEPTANAVEQYVTRVRRKLSGSSVEIRTARGMGYQI 218 >ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383] gb|ABB12637.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 221 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/221 (55%), Positives = 166/221 (75%), Gaps = 1/221 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+VED A++ AI L R+GH V+ E++GA AN L E +DL++LD LP DGF Sbjct: 1 MRILVVEDDAEIGAAIRNRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+ LR G TPVL++TA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + ++L L IDR SR A LDGQP+ L+R+E LLEI+A+RP RIF+KDEL+++LF+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLH 220 + P+AN+VEQYV R+RKKL ++ EIRT RG+GYQ+ H Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH 221 >ref|ZP_02381073.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 221 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/221 (54%), Positives = 168/221 (76%), Gaps = 1/221 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+ ED A++ AI + L R+GH V+ E++GA AN L E +DL++LDVMLP DGF Sbjct: 1 MRILVAEDDAEIGAAIRSRLTRLGHAVDLETDGATANSLLRVERFDLVVLDVMLPSMDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+ LR G TPVL++TA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 AILRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + ++L L+IDR SR A LDG+P+ L+R+E LLEI+A+RP RIF+K+ L+++LF+ Sbjct: 121 GHANDVLTLGGLTIDRSSRLAELDGRPLSLSRQEFALLEILASRPQRIFSKEGLLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLH 220 + PSAN+VEQYV R+R+KL ++ EIRT RG+GYQ+ H Sbjct: 181 FGNEPSANAVEQYVTRVRRKLHGSSVEIRTARGMGYQIAAH 221 >ref|YP_001767079.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA14645.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 225 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/221 (61%), Positives = 172/221 (77%), Gaps = 3/221 (1%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRILLVEDT D+ EAI T L +GH V+WE +GA + L ++YDL+ILDV LP DGF Sbjct: 1 MRILLVEDTRDLGEAIATRLRALGHAVDWERDGADGDAALQVQAYDLVILDVNLPGLDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 S+L++LR R +PVL+LTA +EV++RV ALDLGADDYLVKPFDFREL+AR+R LLRR Sbjct: 61 SVLRRLRARRGRSPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + N + NL +DR +RSA + GQP++LTRRE TL+EI+AARPGRIF K EL++R+ + Sbjct: 121 GHADNAIAVGNLVLDRAARSARVAGQPLDLTRREWTLMEILAARPGRIFGKAELLERVTS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAF--EIRTLRGLGYQLV 218 +++ S N+VEQ VARLR+KLA A EIRTLRGLGYQ+V Sbjct: 181 FEEDASENAVEQIVARLRRKLAQAGAEPEIRTLRGLGYQVV 221 >ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gb|ABX18767.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1] Length = 221 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 121/221 (54%), Positives = 168/221 (76%), Gaps = 1/221 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+VED A++ AI + L R+GH V+ E++G+ AN L E +DL++LD LP DGF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+ LR G TPVL++TA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++++L L IDR SR A LDG+P+ L+R+E LLEI+A+RP RIF+KDEL+++LF+ Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLH 220 + PSAN+VEQYV R+RKKL ++ EIRT RG+GYQ+ H Sbjct: 181 FGNEPSANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH 221 >ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA93082.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 121/221 (54%), Positives = 167/221 (75%), Gaps = 1/221 (0%) Query: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHANRRLS-ESYDLLILDVMLPQQDGF 59 MRIL+VED A++ AI + L R+GH V+ E++GA AN L E +DL++LD LP DGF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 60 SLLQQLRTRGQHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 ++L+ LR G TPVL++TA + +++RV L LGADDYLVKPFD+RELDAR++ LLRR+ Sbjct: 61 TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + ++L L IDR SR A LDGQP+ L+R+E LLEI+A+RP RIF+K+EL+++LF+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLH 220 + P+AN+VEQYV R+RKKL ++ EIRT RG+GYQ+ H Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH 221