BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0025.p (140 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_296425.1| signal peptide protein [Ralstonia eutropha JMP1... 116 1e-24 ref|ZP_08275608.1| hypothetical protein IMCC9480_615 [Oxalobacte... 112 2e-23 ref|YP_001352891.1| hypothetical protein mma_1201 [Janthinobacte... 112 2e-23 ref|YP_726969.1| hypothetical protein H16_A2513 [Ralstonia eutro... 108 2e-22 ref|YP_004686203.1| hypothetical protein CNE_1c23980 [Cupriavidu... 107 7e-22 ref|ZP_08273246.1| putative signal peptide protein [Oxalobactera... 103 8e-21 ref|YP_584390.1| hypothetical protein Rmet_2242 [Cupriavidus met... 102 2e-20 ref|YP_004752725.1| putative signal peptide protein [Collimonas ... 98 4e-19 ref|YP_002006020.1| hypothetical protein RALTA_A2016 [Cupriavidu... 98 4e-19 ref|YP_004754723.1| putative signal peptide protein [Collimonas ... 95 4e-18 >ref|YP_296425.1| signal peptide protein [Ralstonia eutropha JMP134] gb|AAZ61581.1| probable signal peptide protein [Ralstonia eutropha JMP134] Length = 133 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 87/142 (61%), Gaps = 22/142 (15%) Query: 3 KKIILASLVALSAAAAVAPVAQAQVSVNINIGAPPP-PRAEPLPPPRHGFIWVPGFWDWD 61 + I+LAS V AV AQAQVSVNI IG PPP P E +P PR G++W+PG+WDWD Sbjct: 10 RAILLASFVC--GGLAVGQSAQAQVSVNIAIGVPPPAPVYEVVPAPRPGYVWMPGYWDWD 67 Query: 62 GH--RHFWREGQWLRERPGYVYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDH- 118 H +H W++G+W ERPGYVY P W Q GW L PGR WDDH Sbjct: 68 DHHHKHAWKKGRWEHERPGYVYESPRWIQSRDGWVL---------VPGR------WDDHR 112 Query: 119 GPGPGPGRGRDCPPGHARKGEC 140 G G GP +G CPPGHA+KGEC Sbjct: 113 GKGKGP-KGYHCPPGHAKKGEC 133 >ref|ZP_08275608.1| hypothetical protein IMCC9480_615 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30919.1| hypothetical protein IMCC9480_615 [Oxalobacteraceae bacterium IMCC9480] Length = 146 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 7/146 (4%) Query: 2 MKKIILAS--LVALSAAAAVAPVAQAQVSVNINIG-APPPPRAEPLPPPRHGFIWVPGFW 58 MKKI+ A+ ++A S+AA + A AQVSVNI +G APPP R E +PPPR+G++W PG+W Sbjct: 1 MKKILCAAAVMLAFSSAAFLPTQAMAQVSVNIILGDAPPPVRYEVVPPPRNGYLWAPGYW 60 Query: 59 DWDGHRHFWREGQWLRERPGYVYAQPVWRQGPRGWELDRGGW----RGGPPPGRGPRHED 114 +W+ ++H W G W R R Y Y QP WRQ GW LDRGGW + + +H D Sbjct: 61 NWNNNQHVWSSGHWERNRVDYRYDQPQWRQEDNGWRLDRGGWKQDGKKYKKDKKDKKHRD 120 Query: 115 WDDHGPGPGPGRGRDCPPGHARKGEC 140 D + G CPPG A+KG C Sbjct: 121 DDRYDDRDDRHDGGHCPPGQAKKGNC 146 >ref|YP_001352891.1| hypothetical protein mma_1201 [Janthinobacterium sp. Marseille] gb|ABR91253.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 134 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 87/141 (61%), Gaps = 9/141 (6%) Query: 2 MKKIILA-SLVALSAAAAVAPVAQAQVSVNINIG-APPPPRAEPLPPPRHGFIWVPGFWD 59 MK+++LA + VA++++ + A AQVSV++NIG APPP R E +PPPR+G++W PG+W+ Sbjct: 1 MKRLVLALAAVAITSSVVLPLQASAQVSVSVNIGTAPPPLRYERVPPPRNGYVWAPGYWN 60 Query: 60 WDGHRHFWREGQWLRERPGYVYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDHG 119 W+G++H W +G W++ RPGY Y +P WRQ W LD W+ P H+ Sbjct: 61 WNGYQHVWAQGHWIQARPGYSYHRPEWRQDHGRWYLDNERWQPSP-------HDRHYKDK 113 Query: 120 PGPGPGRGRDCPPGHARKGEC 140 G CPPG A+KG C Sbjct: 114 HHKKDHHGYHCPPGQAKKGNC 134 >ref|YP_726969.1| hypothetical protein H16_A2513 [Ralstonia eutropha H16] emb|CAJ93601.1| hypothetical membrane associated protein [Ralstonia eutropha H16] Length = 140 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 11/126 (8%) Query: 18 AVAPVAQAQVSVNINIGAPPP-PRAEPLPPPRHGFIWVPGFWDWDGH--RHFWREGQWLR 74 + + AQVSVNI IG PPP P E +P PR G++W+PG+WDWD H +H W++G+W R Sbjct: 23 TFSAASMAQVSVNIAIGVPPPAPIYEVVPAPRSGYVWMPGYWDWDDHHHKHAWKKGRWER 82 Query: 75 ERPGYVYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDHGPGPGPGRGRDCPPGH 134 ERPGY+Y P W Q GW L G W G +G + + D +G CPPGH Sbjct: 83 ERPGYIYESPRWIQSRDGWVLVPGRWDQGGYKDKGQKDKGHKD--------KGYHCPPGH 134 Query: 135 ARKGEC 140 A+KGEC Sbjct: 135 AKKGEC 140 >ref|YP_004686203.1| hypothetical protein CNE_1c23980 [Cupriavidus necator N-1] gb|AEI77722.1| hypothetical membrane protein [Cupriavidus necator N-1] Length = 135 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 16/121 (13%) Query: 23 AQAQVSVNINIGAPPP-PRAEPLPPPRHGFIWVPGFWDWDGH--RHFWREGQWLRERPGY 79 + AQVSVN+ IG PPP P E +P PR G++WVPG+WDWD H +H W++G+W RERPGY Sbjct: 28 SMAQVSVNVAIGVPPPAPIYEVVPTPRSGYVWVPGYWDWDDHYHKHAWKKGRWERERPGY 87 Query: 80 VYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDHGPGPGPGRGRDCPPGHARKGE 139 +Y P W Q GW L G W G +G H+D +G CPPGHA+KGE Sbjct: 88 IYESPRWIQSRDGWVLVPGRWDQGGYKDKG--HKD-----------KGYHCPPGHAKKGE 134 Query: 140 C 140 C Sbjct: 135 C 135 >ref|ZP_08273246.1| putative signal peptide protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33284.1| putative signal peptide protein [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 10/131 (7%) Query: 1 MMKKIILASLVALSAAAAVAP-VAQAQVSVNINIG-APPPPRAEPLPPPRHGFIWVPGFW 58 +K+I+ A+ + + AA+ P A AQV VNI IG APPP R E P PR G+ W PG+W Sbjct: 4 TVKRILFAAAALIFSTAALLPGTASAQVGVNIIIGNAPPPLRYEVRPGPRRGYDWAPGYW 63 Query: 59 DWDGHRHFWREGQWLRERPGYVYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDH 118 +W+G H W G W R RPGY+Y+QP W++ + W L+RGGW G GPR E H Sbjct: 64 NWNGRNHIWAGGHWERSRPGYLYSQPQWQRDGQRWRLNRGGWHQGG----GPRAE---HH 116 Query: 119 GPGPGPGRGRD 129 G G G GR RD Sbjct: 117 GRGHG-GRDRD 126 >ref|YP_584390.1| hypothetical protein Rmet_2242 [Cupriavidus metallidurans CH34] gb|ABF09121.1| conserved hypothetical protein (secreted) [Cupriavidus metallidurans CH34] Length = 143 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/118 (53%), Positives = 75/118 (63%), Gaps = 6/118 (5%) Query: 26 QVSVNINIGAPPP-PRAEPLPPPRHGFIWVPGFWDWD--GHRHFWREGQWLRERPGYVYA 82 QVS+NI IG PPP P E +PPPR G++W PG+WDWD GH+H W++G W+ ERPGYVY Sbjct: 29 QVSINIGIGVPPPAPVYEVVPPPRAGYVWAPGYWDWDDHGHKHAWKKGHWVGERPGYVYE 88 Query: 83 QPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDHGPGPGPGRGRDCPPGHARKGEC 140 QP W + GW L W G PGRG + H G G G CPPGHA+KGEC Sbjct: 89 QPRWVRASNGWVLQPERWNRG--PGRGDDDDQGHGHDHDRGRG-GYHCPPGHAKKGEC 143 >ref|YP_004752725.1| putative signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61902.1| putative signal peptide protein [Collimonas fungivorans Ter331] Length = 144 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/141 (49%), Positives = 87/141 (61%), Gaps = 3/141 (2%) Query: 2 MKKIILASLVALSAAAAVAPV-AQAQVSVNINIGAPPP-PRAEPLPPPRHGFIWVPGFWD 59 MK+I+ A+ +A +A A P A AQ+ VNI IG PPP PR E +PPPR G++W PG+W+ Sbjct: 5 MKRILCAAALAALSATAFIPSQAMAQIGVNITIGTPPPAPRYERVPPPRVGYVWAPGYWN 64 Query: 60 WDGHRHFWREGQWLRERPGYVYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDHG 119 W+G RH W G W R R GY Y++P WRQG GWEL+RGGWR G + D Sbjct: 65 WNGSRHVWAGGHWERARSGYQYSRPEWRQGNNGWELNRGGWRRGDDRRDDRHDDRRGDDW 124 Query: 120 PGPGPGRGRDCPPGHARKGEC 140 G GR CPPG A+KG C Sbjct: 125 RDDGNGR-YHCPPGQAKKGNC 144 >ref|YP_002006020.1| hypothetical protein RALTA_A2016 [Cupriavidus taiwanensis LMG 19424] emb|CAQ69957.1| Conserved hypothetical protein; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 136 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 15/129 (11%) Query: 15 AAAAVAPVAQAQVSVNINIGAPPP-PRAEPLPPPRHGFIWVPGFWDWDGH--RHFWREGQ 71 + ++ + AQVSVNI IG PPP P E +P PR G++WVPG+WDWD H +H W++G+ Sbjct: 20 SGLTLSAASMAQVSVNIAIGVPPPAPIYEAVPAPRSGYVWVPGYWDWDDHHRKHDWKKGR 79 Query: 72 WLRERPGYVYAQPVWRQGPRGWELDRGGWRGGPPPGRGPRHEDWDDHGPGPGPGRGRDCP 131 W RERPGYVY P W Q GW L G W + G G G +G CP Sbjct: 80 WERERPGYVYESPRWIQARDGWVLVPGRW------------DPGGYKGKGKGNDKGYHCP 127 Query: 132 PGHARKGEC 140 PGHA+KGEC Sbjct: 128 PGHAKKGEC 136 >ref|YP_004754723.1| putative signal peptide protein [Collimonas fungivorans Ter331] gb|AEK63900.1| putative signal peptide protein [Collimonas fungivorans Ter331] Length = 105 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 4/97 (4%) Query: 2 MKKIILASLVALSAAAAVAPVAQAQVS--VNINIGAPPPPRAEPLPPPRHGFIWVPGFWD 59 +K I+ S++ALSA V P+ Q Q + V + IG PPPPR E +PP R G++W PG+W Sbjct: 3 IKSILCVSVLALSAGL-VTPLTQVQAATYVGVQIGQPPPPRYEVVPPSRAGYVWAPGYWR 61 Query: 60 WDGHRHFWREGQWLRERPGYVYAQPVWRQGPRG-WEL 95 W+G RH W G W+R RPGY Y P W +GPRG W++ Sbjct: 62 WNGRRHVWMGGSWMRARPGYRYVPPRWERGPRGDWQM 98