BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0013.p (225 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspir... 461 e-128 ref|YP_004753213.1| Crp/Fnr family transcriptional regulator [Co... 405 e-111 gb|EGW59827.1| putative transcriptional regulator, Crp/Fnr famil... 282 2e-74 ref|YP_003166853.1| Crp/Fnr family transcriptional regulator [Ca... 273 1e-71 ref|YP_004684143.1| CRP family transcriptional regulator [Cupria... 265 3e-69 ref|YP_724803.1| Crp family transcriptional regulator [Ralstonia... 265 5e-69 ref|YP_294485.1| cyclic nucleotide-binding protein [Ralstonia eu... 263 2e-68 ref|YP_001795618.1| Crp family transcriptional regulator [Cupria... 262 3e-68 ref|YP_283477.1| cyclic nucleotide-binding [Dechloromonas aromat... 256 2e-66 ref|YP_582368.1| CRP family transcriptional regulator [Cupriavid... 255 3e-66 >ref|YP_003775975.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ64067.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 225 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/225 (100%), Positives = 225/225 (100%) Query: 1 METSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLK 60 METSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLK Sbjct: 1 METSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLK 60 Query: 61 MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNS 120 MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNS Sbjct: 61 MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNS 120 Query: 121 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE 180 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE Sbjct: 121 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE 180 Query: 181 VGNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQFPG 225 VGNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQFPG Sbjct: 181 VGNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQFPG 225 >ref|YP_004753213.1| Crp/Fnr family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62390.1| transcriptional regulator, Crp/Fnr family [Collimonas fungivorans Ter331] Length = 232 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/222 (88%), Positives = 207/222 (93%) Query: 2 ETSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKM 61 ETSI+ MLAK++WA++LT+ QLARVE E+ SRKI G +VC KGD VTHWIGVHEGLLKM Sbjct: 9 ETSIQDMLAKTMWARSLTDAQLARVEAEMFSRKIAGGAFVCHKGDPVTHWIGVHEGLLKM 68 Query: 62 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSI 121 SSVSPEGKTVSFAGMANGGWLGEGSLLK EPRKYDVVALR+SELLYMPKATY+WLLDNSI Sbjct: 69 SSVSPEGKTVSFAGMANGGWLGEGSLLKSEPRKYDVVALRDSELLYMPKATYLWLLDNSI 128 Query: 122 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 181 FNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIG LQISQEEV Sbjct: 129 QFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGRELQISQEEV 188 Query: 182 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 GNLSG SRQRANQALQVLEKAGLLKVDYGSITI DL+GLRQF Sbjct: 189 GNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLDGLRQF 230 >gb|EGW59827.1| putative transcriptional regulator, Crp/Fnr family [Dechlorosoma suillum PS] Length = 224 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 130/220 (59%), Positives = 172/220 (78%) Query: 4 SIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSS 63 ++ +L + W + LT E+ AR+E R+IPAGG+VC KG+ V +W+GV +GL+K++S Sbjct: 3 TLSELLHSTTWGRELTGEEFARIEAGTFVRRIPAGGFVCYKGEPVDYWLGVIDGLVKIAS 62 Query: 64 VSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPF 123 GKT +F G+ GGW GEGS+LK+EPR+YDVVALR+S++ M + T+ WLLD+SIPF Sbjct: 63 HGVTGKTATFTGVPAGGWFGEGSMLKNEPRRYDVVALRDSQVACMSRTTFQWLLDHSIPF 122 Query: 124 NRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGN 183 NRFL+ QLNERL FI VE DR+LE DAR+ARC+A+LFNP L PGIG LQISQEE+G Sbjct: 123 NRFLLNQLNERLGQFIGRVEMDRLLETDARIARCVASLFNPVLYPGIGPQLQISQEEIGY 182 Query: 184 LSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 L+G SRQRANQAL++LE+ GLL+V+YG +T+ DLEGLR+F Sbjct: 183 LAGVSRQRANQALKLLEEHGLLRVEYGGVTVIDLEGLRRF 222 >ref|YP_003166853.1| Crp/Fnr family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34924.1| transcriptional regulator, Crp/Fnr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 230 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 126/220 (57%), Positives = 170/220 (77%) Query: 4 SIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSS 63 S+ ML S WA+ L+ ++L +V + R IPAGGYVC KG+AV +W+G+ +GL KM+S Sbjct: 9 SLDDMLCASCWARQLSADELDQVRRDTFVRTIPAGGYVCMKGEAVDYWLGIVDGLAKMAS 68 Query: 64 VSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPF 123 GK SF G+++G W GEGSL+KDEPR+YDV+ALRES + YM ++ + LLD+SIPF Sbjct: 69 NWRTGKATSFVGLSSGSWFGEGSLMKDEPRRYDVIALRESRIAYMKRSRFQHLLDHSIPF 128 Query: 124 NRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGN 183 NRFL+ QLNERL+ FI ++E++R+L+ D+R+ARCLA++FNP L PG L L+ISQEE+G Sbjct: 129 NRFLLLQLNERLSQFIGMIEHERLLDSDSRLARCLASMFNPLLYPGSSLELRISQEEIGL 188 Query: 184 LSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 L+G SRQR NQAL LE+AGLL++DYG++TI DL GLR F Sbjct: 189 LAGISRQRVNQALHKLEEAGLLRIDYGTLTILDLAGLRSF 228 >ref|YP_004684143.1| CRP family transcriptional regulator [Cupriavidus necator N-1] gb|AEI75662.1| transcriptional regulator CRP family [Cupriavidus necator N-1] Length = 222 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 120/213 (56%), Positives = 163/213 (76%) Query: 11 KSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSPEGKT 70 + +WA L+ EQ RV + + G YVC KGD HW+GV EG++K+++VSP GK+ Sbjct: 8 RCVWAADLSPEQRERVRRAMFVHEYTQGDYVCHKGDMAEHWMGVLEGIVKITTVSPSGKS 67 Query: 71 VSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRFLVTQ 130 V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T++WLLD S+PF RFL+TQ Sbjct: 68 VTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFLWLLDTSLPFTRFLLTQ 127 Query: 131 LNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGTSRQ 190 NERL FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L+G SRQ Sbjct: 128 FNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGTTLEISQEEIGLLAGISRQ 187 Query: 191 RANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 RANQAL+VLE+ GL++VDYG I + DLEGLRQ+ Sbjct: 188 RANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220 >ref|YP_724803.1| Crp family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ91435.1| transcriptional regulator, CRP-family [Ralstonia eutropha H16] Length = 222 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 120/213 (56%), Positives = 163/213 (76%) Query: 11 KSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSPEGKT 70 + +WA L+ EQ RV + + G YVC KGD HW+GV EG++K+++VSP GK+ Sbjct: 8 RCVWAADLSPEQRERVRRAMFVHEYTQGDYVCHKGDMAEHWMGVLEGIVKITTVSPSGKS 67 Query: 71 VSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRFLVTQ 130 V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T++WLLD S+PF RFL+TQ Sbjct: 68 VTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFLWLLDTSLPFTRFLLTQ 127 Query: 131 LNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGTSRQ 190 NERL FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L+G SRQ Sbjct: 128 FNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGKTLEISQEEIGLLAGISRQ 187 Query: 191 RANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 RANQAL+VLE+ GL++VDYG I + DLEGLRQ+ Sbjct: 188 RANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220 >ref|YP_294485.1| cyclic nucleotide-binding protein [Ralstonia eutropha JMP134] gb|AAZ59641.1| cyclic nucleotide-binding protein [Ralstonia eutropha JMP134] Length = 222 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 120/216 (55%), Positives = 164/216 (75%) Query: 8 MLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSPE 67 + + +WA L+ EQ RV + R+ G YVC KG+ HW+GV EG++K+++VSP Sbjct: 5 FVDRCVWAADLSAEQRDRVRRAMFVREYTQGDYVCHKGEIAEHWLGVLEGIVKITTVSPS 64 Query: 68 GKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRFL 127 GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T+ WLLD S+PF RFL Sbjct: 65 GKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFQWLLDTSLPFTRFL 124 Query: 128 VTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGT 187 +TQ NERL FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L+G Sbjct: 125 LTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGNTLEISQEEIGLLAGI 184 Query: 188 SRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 SRQRANQAL+VLE+ GL++VDYG I + DLEGLRQ+ Sbjct: 185 SRQRANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220 >ref|YP_001795618.1| Crp family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAP62896.1| putative transcriptional regulator, crp family [Cupriavidus taiwanensis LMG 19424] Length = 222 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 163/216 (75%) Query: 8 MLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSPE 67 + + +WA L+ EQ RV + + G YVC KGD HW+GV EG++K+++VSP Sbjct: 5 FVDRCVWAADLSPEQRERVRRAMFVHEYSQGDYVCHKGDKAEHWLGVLEGIVKITTVSPS 64 Query: 68 GKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRFL 127 GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T+ WLLD S+PF RFL Sbjct: 65 GKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFQWLLDTSLPFTRFL 124 Query: 128 VTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGT 187 +TQ NERL FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L+G Sbjct: 125 LTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGKTLEISQEEIGLLAGI 184 Query: 188 SRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 SRQRANQAL+VLE+ GL++VDYG I + DL+GLRQ+ Sbjct: 185 SRQRANQALKVLEQQGLVRVDYGVIEVLDLDGLRQY 220 >ref|YP_283477.1| cyclic nucleotide-binding [Dechloromonas aromatica RCB] gb|AAZ45007.1| Cyclic nucleotide-binding protein [Dechloromonas aromatica RCB] Length = 224 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 120/216 (55%), Positives = 159/216 (73%) Query: 8 MLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSPE 67 +L S+W Q+LT E++ R + R G ++C KG+ V +W+G+ +GL KM+S Sbjct: 7 LLRTSLWGQSLTAEEMDRALAGTIERSFAPGAFICMKGEPVDYWMGIIDGLGKMASHWTT 66 Query: 68 GKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRFL 127 GKT S G++ GGW GEGSL+K EPR+YDV+ALRE+ + +M + T+ WLLD+SIPFNR++ Sbjct: 67 GKTTSLTGISVGGWFGEGSLMKKEPRRYDVMALRETRVAFMSRNTFNWLLDHSIPFNRYM 126 Query: 128 VTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSGT 187 + QLNERL FI ++E +RML+ DAR+AR LAALFNP L PG LQISQEE+G L+G Sbjct: 127 IAQLNERLGQFIGMIENERMLDTDARIARGLAALFNPVLYPGTNRLLQISQEELGYLAGV 186 Query: 188 SRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 SRQRANQAL+VLE AGL++ +YG I I DLEGLR F Sbjct: 187 SRQRANQALKVLEDAGLVRSEYGGIHIVDLEGLRSF 222 >ref|YP_582368.1| CRP family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF07099.1| transcriptional regulator, CRP-family [Cupriavidus metallidurans CH34] Length = 259 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 121/223 (54%), Positives = 163/223 (73%) Query: 1 METSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLK 60 M + + + WA L+ EQ ARV+ R+ G YVC KG+ HW+GV EG++K Sbjct: 35 MTATNNDFIDRCAWATNLSPEQRARVKRVTTVREYTQGEYVCHKGEMAEHWLGVVEGVVK 94 Query: 61 MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNS 120 +++VSP GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P T+ WLLD S Sbjct: 95 ITTVSPSGKSVTFTGVPTGGWFGEGAVLKHEIRKYDVMALRRSRIAFIPIETFQWLLDTS 154 Query: 121 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE 180 +PF RFL+ QLN+RL FI+ VEY+R+L+ D+RVAR +++LFN L PGIG L+ISQEE Sbjct: 155 LPFTRFLLMQLNDRLGQFIAAVEYERLLDIDSRVARAVSSLFNESLYPGIGTTLEISQEE 214 Query: 181 VGNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 +G L+G SRQRANQAL+VLE+ GL++VDYG I DLEGLRQ+ Sbjct: 215 IGLLAGISRQRANQALKVLEQQGLVRVDYGVIEALDLEGLRQY 257