BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0011.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775977.1| LuxR family two component response regulator... 437 e-121 ref|ZP_03632499.1| two component transcriptional regulator, LuxR... 255 4e-66 ref|YP_003796624.1| LuxR family response regulator [Candidatus N... 231 6e-59 ref|YP_001817717.1| two component LuxR family transcriptional re... 226 3e-57 ref|YP_522173.1| two component LuxR family transcriptional regul... 218 5e-55 ref|ZP_01127147.1| DNA-binding response regulator, LuxR family p... 209 3e-52 ref|ZP_08142919.1| two component LuxR family transcriptional reg... 208 4e-52 ref|YP_001667906.1| two component LuxR family transcriptional re... 204 6e-51 ref|NP_744275.1| LuxR family DNA-binding response regulator [Pse... 204 8e-51 ref|YP_001268923.1| two component LuxR family transcriptional re... 204 1e-50 >ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64069.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG Sbjct: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK Sbjct: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 Query: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA Sbjct: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 Query: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK Sbjct: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 >ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 160/208 (76%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 RI+LADDH L+R+GI++LL MPGVEVVGEA+DG E + ++ L+P +VL+DIAM G+NG Sbjct: 5 RILLADDHTLLRAGIRSLLEKMPGVEVVGEAADGREALSLVKALQPGVVLMDIAMSGLNG 64 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 LEA R+ E+P+ R ++LSM+ +EEYV+Q L AGA GYL KD+A ELE A+ V G Sbjct: 65 LEATARIVKEFPSSRVIILSMHANEEYVLQTLRAGAAGYLLKDAATAELELAIQAVSRGD 124 Query: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 YL IS+ +++Y+ R+ +P+E LTPRQREILQLIAEG +TKE+A+ LN+S KT+ Sbjct: 125 TYLSPAISKRVIEDYLGRINGQKSPMEQLTPRQREILQLIAEGKSTKEMAFLLNLSVKTV 184 Query: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGI 211 ETHR QLM+RL I DVPGLVRYA+R G+ Sbjct: 185 ETHRTQLMDRLGIHDVPGLVRYAMRMGL 212 >ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii] emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 216 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 116/212 (54%), Positives = 150/212 (70%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 R++L +DH LVR+G + LL + G+ V+GE SDG ++ +L PD+VL+DIAM GMNG Sbjct: 5 RVLLVEDHTLVRAGFRVLLEKIEGILVIGEVSDGRSATKLAKELDPDVVLMDIAMAGMNG 64 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 LEA RR+R E P + LMLSMY +EEY+ +AL AGA GYL KD+ ELE A+ V Sbjct: 65 LEATRRIRQESPRTKILMLSMYTNEEYLKEALRAGAAGYLLKDADRNELELAIKAVWRSE 124 Query: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 YL +++ A+D Y ++ P+ LT RQREILQLIAEG +TK+IA +L++S KT+ Sbjct: 125 TYLTPSMTKFAVDAYCQQGEAQTGPLARLTGRQREILQLIAEGCSTKQIAQRLDLSVKTV 184 Query: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 ETHRAQLMERLDI DVPGLVR AIRTG+ D Sbjct: 185 ETHRAQLMERLDIHDVPGLVRLAIRTGLVQSD 216 >ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 219 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/213 (51%), Positives = 149/213 (69%), Gaps = 1/213 (0%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 +I+LADDHALVR+GI+ LL +PGV +VGEA DG E + ++ PD+ ++DI M G+NG Sbjct: 6 KIVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLNG 65 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 +A R+ E+P + L+LSM+ +E+YV+QAL AGA GYL KD+A EL+ AL V+ G Sbjct: 66 FDATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAATAELQLALNAVRKGE 125 Query: 124 QYLDSHISREALDNYMKRVAQ-NGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 YL IS+ L + ++ P + LTPR REI+QLIAEG +TKEIA+ LN+S KT Sbjct: 126 TYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKT 185 Query: 183 IETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 IETHR LM RL + DV G+VRYA+RTG+ + D Sbjct: 186 IETHRMHLMARLGLHDVAGVVRYALRTGLISAD 218 >ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 217 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 114/211 (54%), Positives = 154/211 (72%) Query: 3 TRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMN 62 R++LADDH LVR+G++ LL +MP VEVVGEA+DG ++ + +L+P LV++DIAM G+N Sbjct: 4 VRVLLADDHTLVRAGLRKLLESMPDVEVVGEAADGLALLALAAELQPQLVMMDIAMPGLN 63 Query: 63 GLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHG 122 GLEA RL +PTIR L+LSM+ +EEYV QAL GA YL KD A ELE AL V G Sbjct: 64 GLEATARLAKAWPTIRVLILSMHQNEEYVRQALRNGAAAYLLKDCAPLELELALKAVLRG 123 Query: 123 RQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 YL +S+ + +Y++R+ P LTPRQRE+LQLIAEG +TKEIA +L+++ KT Sbjct: 124 ETYLSPAVSKGVVSDYVQRLRGEAQPGAQLTPRQREVLQLIAEGQSTKEIARRLDLAVKT 183 Query: 183 IETHRAQLMERLDIRDVPGLVRYAIRTGIAT 213 +E+HR+QLM++LDI +V GLVRYA+ G+ T Sbjct: 184 VESHRSQLMKQLDIHEVAGLVRYAMHVGVVT 214 >ref|ZP_01127147.1| DNA-binding response regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gb|EAR21892.1| DNA-binding response regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 245 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 110/217 (50%), Positives = 152/217 (70%), Gaps = 5/217 (2%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 RI+LADDHALVR+G++ LL +P VE+VGEA++G E + L PDLVL+DI+M +NG Sbjct: 23 RILLADDHALVRAGLRKLLEQIPAVEIVGEAANGLEACRLARSLNPDLVLMDISMTVLNG 82 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 +EA +L + + L+LSMY + +YV +AL AGA GYL K++ TELE A+ V+ G+ Sbjct: 83 VEATAQLL-KSSDAQVLILSMYANSDYVQRALKAGARGYLLKEATNTELELAIESVRKGK 141 Query: 124 QYLDSHISREALD---NYMKRVA-QNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVS 179 YL + + LD +Y+ + + Q G +EVLTPRQR+ILQLI EGN +IA L++S Sbjct: 142 IYLSPAVVTDVLDECLDYLGQTSKQEGGELEVLTPRQRQILQLIVEGNTNSDIADLLHLS 201 Query: 180 AKTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 KT+E HR++LM RLDI DVP LVRYA+R GI P++ Sbjct: 202 IKTVEAHRSELMHRLDIHDVPSLVRYAMRMGIIPPER 238 >ref|ZP_08142919.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gb|EGB95777.1| two component LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 219 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 103/218 (47%), Positives = 153/218 (70%), Gaps = 3/218 (1%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 M R++L DDH+L+R+G++AL+ +PG VVGEA DG++++E + L PD+VLLDI+M+ Sbjct: 1 MTCRLLLVDDHSLIRAGVRALVCDIPGYSVVGEADDGSQLLEQVRALAPDIVLLDISMRS 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 +GL+AL +LR + L+LSM+ + +M+AL +GA+GYL KD++ATELE+AL V+ Sbjct: 61 TSGLDALTQLRACGSNCKVLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALEAVR 120 Query: 121 HGRQYLDSHISREALDNYMKRV---AQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLN 177 HG +YL I+ ++ ++R AQ G+ LT RQ EIL+LI G +T+EIA L Sbjct: 121 HGERYLSPAIAHTVINQALQRNRPGAQGGSDRHNLTARQLEILRLIVRGKSTREIATGLG 180 Query: 178 VSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 +S KT+ETHR+Q+M+RL I DV GLV +A+R I + D Sbjct: 181 LSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKIISLD 218 >ref|YP_001667906.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gb|ABY97570.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 219 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 101/218 (46%), Positives = 153/218 (70%), Gaps = 3/218 (1%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 M R++L DDH+L+R+G++AL+ +PG +V+GEA DG++++E + L PD+VLLDI+M+ Sbjct: 1 MTCRLLLVDDHSLIRAGVRALVCDIPGYDVIGEADDGSQLLEQVRTLAPDIVLLDISMRS 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 +GL+AL +LR T + L+LSM+ + +M+AL +GA+GYL KD++ATELE+AL V+ Sbjct: 61 TSGLDALTQLRASGSTCKVLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALSAVR 120 Query: 121 HGRQYLDSHISREALDN---YMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLN 177 +G +YL I+ ++ + K+ Q+ LT RQ EIL+LI G +T+EIA L Sbjct: 121 NGERYLSPAIAHTVINQALRHTKQGKQSAGERHNLTARQLEILRLIVRGKSTREIATGLG 180 Query: 178 VSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 +S KTIETHR+Q+M+RL I DV GLV +A+R I + D Sbjct: 181 LSIKTIETHRSQIMKRLQIHDVAGLVLFAVREKIISLD 218 >ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] Length = 219 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 152/219 (69%), Gaps = 5/219 (2%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 M R++L DDH+L+R+G++AL+ +PG +VVGEA DG ++++ + L PD++LLDI+M+ Sbjct: 1 MTCRLLLVDDHSLIRAGVRALVCDIPGYDVVGEADDGNQLLDQVRTLAPDIILLDISMRS 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 +GL+AL +LR T + L+LSM+ + +M+AL +GA+GYL KD++ATELE+AL V+ Sbjct: 61 TSGLDALTQLRASGSTCKVLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVR 120 Query: 121 HGRQYLDSHISREALDNYMKRVAQNGTPV----EVLTPRQREILQLIAEGNNTKEIAYQL 176 HG +YL I+ ++ ++ Q G P LT RQ EIL+LI G +T+EIA L Sbjct: 121 HGERYLSPAIAHTVINQALRHTKQ-GKPSAGERHNLTSRQLEILRLIVRGKSTREIAAGL 179 Query: 177 NVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 +S KT+ETHR+Q+M+RL I DV GLV +A+R I + D Sbjct: 180 GLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKIISLD 218 >ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas putida F1] gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 219 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 152/218 (69%), Gaps = 3/218 (1%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 M R++L DDH+L+R+G++AL+ +PG +VVGEA DG ++++ + L PD++LLDI+M+ Sbjct: 1 MTCRLLLVDDHSLIRAGVRALVCDIPGYDVVGEADDGNQLLDQVRTLAPDIILLDISMRS 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 +GL+AL +LR T + L+LSM+ + +M+AL +GA+GYL KD++ATELE+AL V+ Sbjct: 61 TSGLDALTQLRASGSTCKVLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVR 120 Query: 121 HGRQYLDSHISREALDN---YMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLN 177 HG +YL I+ ++ + K+ Q+ LT RQ EIL+LI G +T+EIA L Sbjct: 121 HGERYLSPAIAHTVINQALRHTKQGKQSAGERHNLTSRQLEILRLIVRGKSTREIAAGLG 180 Query: 178 VSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPD 215 +S KT+ETHR+Q+M+RL I DV GLV +A+R I + D Sbjct: 181 LSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKIISLD 218