BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0010.p (487 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775978.1| multi-sensor signal transduction histidine k... 974 0.0 ref|YP_002354967.1| multi-sensor signal transduction histidine k... 253 4e-65 ref|ZP_03627608.1| putative PAS/PAC sensor protein [bacterium El... 229 7e-58 ref|ZP_03632498.1| multi-sensor signal transduction histidine ki... 227 4e-57 ref|ZP_03631703.1| multi-sensor signal transduction histidine ki... 221 3e-55 ref|ZP_08503347.1| Sensory transduction histidine kinase [Methyl... 211 3e-52 emb|CBX28855.1| hypothetical protein N47_B20010 [uncultured Desu... 187 4e-45 ref|YP_003796625.1| putative sensor histidine kinase [Candidatus... 166 7e-39 ref|YP_001817716.1| multi-sensor signal transduction histidine k... 166 1e-38 ref|NP_952707.1| sensory box/response regulator [Geobacter sulfu... 165 1e-38 >ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64070.1| multi-sensor signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/475 (99%), Positives = 475/475 (100%) Query: 13 MEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFSGVEALKLV 72 MEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFSGVEALKLV Sbjct: 1 MEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFSGVEALKLV 60 Query: 73 KAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDAQARRKQRA 132 KAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDAQARRKQRA Sbjct: 61 KAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDAQARRKQRA 120 Query: 133 SAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGITPGDMDGLTDLELMS 192 SAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYG+TPGDMDGLTDLELMS Sbjct: 121 SAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPGDMDGLTDLELMS 180 Query: 193 SGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISGEGKGDMVAGLAIDV 252 SGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISGEGKGDMVAGLAIDV Sbjct: 181 SGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISGEGKGDMVAGLAIDV 240 Query: 253 TEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKM 312 TEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKM Sbjct: 241 TEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKM 300 Query: 313 GSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWF 372 GSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWF Sbjct: 301 GSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWF 360 Query: 373 ESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFD 432 ESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFD Sbjct: 361 ESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFD 420 Query: 433 IERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVAPIVRRM 487 IERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVAPIVRRM Sbjct: 421 IERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVAPIVRRM 475 >ref|YP_002354967.1| multi-sensor signal transduction histidine kinase [Thauera sp. MZ1T] gb|ACK54071.1| multi-sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 484 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 261/485 (53%), Gaps = 21/485 (4%) Query: 9 FVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFSGVEA 68 VED E DA L++R L+R GF RV+D + AAL + WD+V+SD+++P F A Sbjct: 1 MVEDSESDALLVLRALRRAGFALRHRRVEDGAGMRAALAGERWDVVLSDFNLPGFDARSA 60 Query: 69 LKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDAQARR 128 L + A PFI+VSG IG++TA+E+M+ GA DY +K + RL A++REL +A+ R Sbjct: 61 LAELHASGLDLPFIVVSGTIGDETAIELMRRGAHDYLMKENLARLAPAIERELGEARVRA 120 Query: 129 KQRASAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGITP--GD--MDG 184 ++R + AL + +A + W +D + + A +G+ P G+ +D Sbjct: 121 ERRRALAALHDSEAVLREAQRIGGVGQWRRDLPGGAPWCSDTLFALFGMAPVAGEDALDA 180 Query: 185 LT------DLELMSSGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISG 238 L DL + + ++R LE + +H ++ +L+ Sbjct: 181 LLTRVHPDDLGRLLQAHRELAAGSERVELEYRI-VHADGSLR------YVLECAARSRGV 233 Query: 239 EGKGDMVAGLAIDVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQS 298 E + G DVT + + L A R + +S RV++ QE ER+ +A LHD +GQ+ Sbjct: 234 EAATPRLIGTVHDVTAQRAAAEALRTANARLRQMSLRVLDAQEAERRAVAYELHDQIGQA 293 Query: 299 LTALKINLETIKKMGSLEGPS---LQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAAL 355 LTA+K++L+ + GP+ L I LAQVR LSL+LRPPQLD +GL A+L Sbjct: 294 LTAVKLDLQAMTPHLD-AGPAVARLAAAIHTTEEALAQVRGLSLNLRPPQLDYMGLEASL 352 Query: 356 RSYVEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDR 415 R + E++ A + F S + + FR++QEA+TN++RHA + + + + Sbjct: 353 RWHAERECARAGLALDFAGSVGEFKAEERCAIVCFRLLQEALTNVVRHAAAKRVRIALSA 412 Query: 416 QHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIV 475 ++ L I DDGRGFD+ RAR + G S GLL MEERA L+GG + I +APGAGT I Sbjct: 413 ADGRLDLEIADDGRGFDLARARRRMLEGASVGLLGMEERAALIGGEVHIDAAPGAGTRIR 472 Query: 476 MHLPV 480 + LP Sbjct: 473 VSLPC 477 >ref|ZP_03627608.1| putative PAS/PAC sensor protein [bacterium Ellin514] gb|EEF62145.1| putative PAS/PAC sensor protein [bacterium Ellin514] Length = 579 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 167/550 (30%), Positives = 270/550 (49%), Gaps = 82/550 (14%) Query: 1 MSIPLRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSM 60 MS PLRVL VED + DA LM+ ELKRGG++P RVD+ + + +AL+ + WDIVISDY M Sbjct: 1 MSQPLRVLVVEDSDNDAQLMLWELKRGGYQPYAFRVDNPKEMESALEREEWDIVISDYVM 60 Query: 61 PMFSGVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRE 120 P F+G++ALKL PFII+SG IGE AV MK+GA DY +K + RL AV+RE Sbjct: 61 PGFTGLDALKLFTKRGLDIPFIILSGHIGEDIAVLAMKSGAHDYIMKDKMARLVPAVERE 120 Query: 121 LRDAQARRKQRASAQALREMQARFNAFMNAAPMPTWI-----KDAQLRYSYVNPAQSAFY 175 LR+A R+ +R S +ALRE + RF + ++ K+ R Y +PA + Sbjct: 121 LREAAVRKARRESDRALRESEERFRQLTENIDVVFFMFDQSGKEGPSRTLYTSPAYEHIW 180 Query: 176 GITPGDMDGLTDLELMSSGAAAASQENDRKVLE-----QKCELHTQETVFDHNHNARILD 230 G + + E + A ++ +++LE ++ E + + + D N N R + Sbjct: 181 GRSRERLK-----EDSRAWLVAVHPDDQKQILEDVPQMERGEFNGEFRIIDGNGNIRWIQ 235 Query: 231 VVRFPISGE-GKGDMVAGLAIDVTEREQSR--------------------------RDLE 263 FP+ E G+ VAG+A D+T+R+++ R+ E Sbjct: 236 YRSFPVLNEQGQLYRVAGIAEDITKRKEAEHKLERNAQELSRMVHDLRCIDEQLRARNRE 295 Query: 264 LAIQRQQL---------------------------LSSRVIEVQERERQHLARGLHDDVG 296 ++ R++L L ++E+ E+ER+ + LHDD+ Sbjct: 296 ISQAREELERRVHERTIDLTVANAELQCQIHERTRLEKELLEIAEKERRRIGFDLHDDLS 355 Query: 297 QSLTALKINLETIK-KMGSLEGPSLQNGIDI---VTAVLAQVRSLSLDLRPPQLDNLG-- 350 Q L + L+ ++ K + E P + + I + V+ +L+ + LD+ G Sbjct: 356 QKLMGISFMLKALETKASNKELPKVADTRKIQELINEVINHTHNLAHNF--STLDSQGGD 413 Query: 351 LIAALRSYVEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIW 410 L L+ K+ ++ F SSG L + ++I QEA +N ++H R +N+W Sbjct: 414 LALELKELAGNVKKMFQISCHFSSSGPLPTLQPNATVQLYKIAQEAASNAIKHGRAKNVW 473 Query: 411 VKIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGA 470 + I D++ L+IR+DG F + S+ + GL M RA ++G S++I + Sbjct: 474 ISITAHEDKLVLTIRNDGVPFPVTTGPSDRM-----GLRIMNSRASMIGASLDIRANGEN 528 Query: 471 GTEIVMHLPV 480 GT + LP+ Sbjct: 529 GTLVSCQLPL 538 >ref|ZP_03632498.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gb|EEF57189.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 656 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 206/357 (57%), Gaps = 6/357 (1%) Query: 129 KQRASAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGITPGDMDGLTD- 187 +++ + +ALR+ + RF + M +I + R+ Y NP + +G M L+ Sbjct: 289 ERKRTEEALRQSEERFRIISEQSLMGIYIIQGE-RFKYANPKFAEMFGYDVSGMLSLSSV 347 Query: 188 LELMSSGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVVRFPISGEGKGD-MVA 246 +++ EN R LE + E + +A +L + E G+ ++ Sbjct: 348 FDVIVEKERPIVSENVRLRLEGQIE-GIRYRFHGQRKDAGLLTIEAHGFKAELNGEPVIL 406 Query: 247 GLAIDVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINL 306 G A DVTERE +L+ ++ Q LS R++E+QE ER+H+AR LHD++GQ LTALKINL Sbjct: 407 GTAQDVTEREMDEAELKRTTEQLQTLSRRLLELQESERRHIARELHDEIGQGLTALKINL 466 Query: 307 ETIKKMGSLEG--PSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSK 364 + +++M + P L + I IV L QVR+LSLDLRP LD+LGL AALR Y +Q+++ Sbjct: 467 QAVQRMANSTAFSPRLLDSIGIVDKTLRQVRNLSLDLRPSMLDDLGLFAALRWYADQQAQ 526 Query: 365 LANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSI 424 A + F + + + +E FR+ QEA+TNI+RHA QN+ + ++ + L+I Sbjct: 527 RAGLRIQFAAEPMEMRQDPALETACFRVAQEALTNIVRHAEAQNVTIDLNVAEKDLQLTI 586 Query: 425 RDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVA 481 RDDG GFD+++ R + +G+S GLL MEERA L+GG +E S PG GTE+ P++ Sbjct: 587 RDDGIGFDMKKVREHVAAGSSLGLLGMEERASLMGGRVEFKSTPGEGTEVYAWFPIS 643 >ref|ZP_03631703.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gb|EEF58012.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 539 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 166/526 (31%), Positives = 257/526 (48%), Gaps = 61/526 (11%) Query: 1 MSIPLRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSM 60 MS +RVL +ED + DA L++ EL++ +EP +ERV+ A+L AL+ PWD+VI+DY + Sbjct: 1 MSQAIRVLLIEDSDYDAALLLLELRQADYEPEYERVETAPAMLEALEKHPWDVVIADYVL 60 Query: 61 PMFSGVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRE 120 P FSG ALKL++ PFIIVSG I E TAV MKAGA DY +K + RL A++RE Sbjct: 61 PSFSGPAALKLLQERGIDLPFIIVSGHIDEDTAVASMKAGAHDYVMKDRLTRLVPAIERE 120 Query: 121 LRDAQARRKQRASAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGITPG 180 +++A+ RR+++ + + Q A ++ P D + +++YVN SAF Sbjct: 121 MQEAEVRRERKKTEAKFAKEQTFRRAIEDSIPSGIAAVDLEGKHTYVN---SAFC----- 172 Query: 181 DMDGLTDLELMSSGA---------AAASQENDRKVLEQKCELHTQETVFDHNHNARILDV 231 +M G ++ EL+ + A Q+ R+ E K E F H N R DV Sbjct: 173 EMVGWSEAELLETRPPYPYWPAEEVATIQQALRQTTEGKNPGEGSELRFQH-QNGRRFDV 231 Query: 232 VRF--PISGEGKGDMVAGLA--IDVTEREQS----RR---------------------DL 262 + PI + G + LA D+TER+Q+ RR L Sbjct: 232 LMLANPIK-DDHGRITGWLASVTDITERKQAQDALRRAHDELEKRVEERTADLVATNGKL 290 Query: 263 ELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLE----TIKKMGSLEGP 318 E AIQ ++ L + ++E+ E+ER+ + LHDD+GQ L + + ++ +KK E Sbjct: 291 ENAIQERKRLENELLEITEKERRRIGLDLHDDLGQKLAGITLMMKGLEIGLKKKNLPEAE 350 Query: 319 SLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANVNGWFESSGHD 378 +V + L+ DL +LD L +AL KL + F+ G Sbjct: 351 EAHRIQTLVNQAMHHASDLAHDLAIAELDEDNLPSALNQLAADIKKLFEIPCRFKHEGET 410 Query: 379 EQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFD--IERA 436 L + ++I QEA TN ++H + + + + + + + + L+IR+ G F I+R Sbjct: 411 PHLDRNTITQFYKISQEAATNAVKHGKAKQVSINLVNKDETLTLTIRNSGLPFPSMIDRN 470 Query: 437 RSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVAP 482 R GL M RA VG S+EI + GT + LP+ P Sbjct: 471 R-------GMGLRIMNYRASTVGASLEIKAGRPTGTIVTCTLPLRP 509 >ref|ZP_08503347.1| Sensory transduction histidine kinase [Methyloversatilis universalis FAM5] gb|EGK73170.1| Sensory transduction histidine kinase [Methyloversatilis universalis FAM5] Length = 506 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 153/502 (30%), Positives = 252/502 (50%), Gaps = 44/502 (8%) Query: 5 LRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFS 64 L VL +ED E+DA L++ ++ G+ RV+DE L AL A+ WD+V+SD++MP FS Sbjct: 15 LNVLLIEDSEDDALLLLHRFRQAGYAVRSTRVEDEAGLREALAARTWDVVLSDHNMPSFS 74 Query: 65 GVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDA 124 + AL +++A PFIIVSGVI E AV M+AGA DY K + RL AV+RE+R+A Sbjct: 75 AMAALGILQALGLDLPFIIVSGVIEEDIAVSAMRAGAHDYLSKGNLDRLVPAVEREMREA 134 Query: 125 QARRKQRASAQALREMQARFNAFMNAAPMPTWI------KDAQLRYSYVNPAQSAFYGIT 178 + R ++ ++ A+R+ +ARF A AA +P + D+ R+ +V+ A G+ Sbjct: 135 RNRAERHSALDAVRDSEARFRAL--AANIPGMVFQLLRHDDSGWRFLFVSDGCLALLGLK 192 Query: 179 PGDMDGLTDLELMSSGAAAASQENDRKVLEQKCEL--HTQETVFDHNHNARILDVVRFP- 235 P TDL S D L + +L TQ TV N RI R P Sbjct: 193 P------TDLIAQPSRFLEMVLPEDMPELNRSMKLSAQTQSTV---NWEGRI----RLPD 239 Query: 236 -----ISGEGKGDMVA-------GLAIDVTEREQSRRDLELAIQRQQLLSSRVIEVQERE 283 ++ ++A G+ ++T+ + + R+L + + LSS + +E E Sbjct: 240 GDVKWVNLRSSPRLLASGVPIWEGIVSNITQSKLTERELRQSRGQLAELSSHLQMAKEEE 299 Query: 284 RQHLARGLHDDVGQSLTALKINLETIKKMGSLEGPSLQNGID----IVTAVLAQVRSLSL 339 R+ +AR +HD++G L ALK + + + + +++ D +V ++ V ++ Sbjct: 300 RERIARDIHDELGGLLVALKFEVSLLASKTTADPEAIRKRSDSMGKLVDDAISTVGRIAR 359 Query: 340 DLRPPQLDNLGLIAALRSYVEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTN 399 +LRP L GL A+ S+ E + + HD + + FR+ QEA+TN Sbjct: 360 ELRPGILKEFGLAPAVESHAEDFAARTGLQCELLCVDHDIEPDEETAIALFRVFQEALTN 419 Query: 400 ILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVG 459 + +HA+ + V++ ++ D + L I DDGRG + ++ SFGL + ER + Sbjct: 420 VSKHAQAHKVEVRMTQEDDDIVLEIADDGRGL----SAADLNKPKSFGLRGIRERVAHLN 475 Query: 460 GSMEITSAPGAGTEIVMHLPVA 481 G E + G GT +++ +P Sbjct: 476 GRFEASRREGGGTRLLLRVPAC 497 >emb|CBX28855.1| hypothetical protein N47_B20010 [uncultured Desulfobacterium sp.] Length = 498 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 129/495 (26%), Positives = 241/495 (48%), Gaps = 39/495 (7%) Query: 5 LRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFS 64 L++ +ED + FL+ R + + + L +DI+I+DY +P S Sbjct: 8 LQIAIIEDEDAHYFLIERAISKKIPDVTIHYFKSAGEFLEKFYESGFDIIITDYQLPDMS 67 Query: 65 GVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSA--IGRLPHAVDRELR 122 G+E L+++ ++ P I+V+G E AV MK G DY +KS LP +++ R Sbjct: 68 GIELLEVLNNEGNEIPVIMVTGQGSEMVAVRAMKLGVWDYLVKSNDFFTLLPMVIEKVAR 127 Query: 123 DAQARRKQRASAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGITPGDM 182 +R +L++ + RF +P+ + D++ +N A +G++ Sbjct: 128 -------ERNLEVSLQKSEERFRIVFENSPIGIGLYDSKGYAIEINKALMNIFGVS---- 176 Query: 183 DGLTDLELMS-------SGAAAASQENDRKVLEQKC---ELHTQETVFDHNHNARI-LDV 231 GL +L + + + N V + C EL + +++ + I +D+ Sbjct: 177 -GLENLNRFTIFDDVNMTDSLKTKLLNGETVRTELCYDLELVKKTNLYNTTKSGTIDIDL 235 Query: 232 VRFPISGEGKGDMVAGLAI--DVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLAR 289 + + + + L++ D+TER+++ ++ +LS ++++ QE ERQ ++R Sbjct: 236 LIRMLDAKDDHRLSGYLSVVQDITERKKANENI-------HMLSQQLLQAQEMERQMISR 288 Query: 290 GLHDDVGQSLTALKINLETIKKMGSLEGPSLQNGI----DIVTAVLAQVRSLSLDLRPPQ 345 LHD + Q L+ LKI ET+ S + + + D + ++ VR +S +LRPP Sbjct: 289 DLHDKIAQDLSMLKIGCETLIDKNSRPAEDIYSKVSQLSDTLRGIITAVRDMSYELRPPG 348 Query: 346 LDNLGLIAALRSYVEQKSKLANVNGWFESSGH-DEQLHHDIENTAFRIVQEAVTNILRHA 404 LD G+ + + Y ++ S+ +N F S+G D L DIE +R++QE + NI +HA Sbjct: 349 LDQFGIESTIYQYCKEFSEKTKLNIEFNSAGMGDINLSPDIEINLYRLIQEGLNNIRKHA 408 Query: 405 RCQNIWVKIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEI 464 + +K+ + + + I D+G+GFD+ + + + GL +MEER L+ G + + Sbjct: 409 AASHADIKLVASYPNIIIRIEDNGKGFDVNKRLAGLTNEKRMGLRSMEERVGLLEGKIAV 468 Query: 465 TSAPGAGTEIVMHLP 479 TS PG GT+I + +P Sbjct: 469 TSQPGKGTKIFIEIP 483 >ref|YP_003796625.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] emb|CBK40699.1| putative Sonsor histidine kinase [Candidatus Nitrospira defluvii] Length = 470 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 145/239 (60%), Gaps = 14/239 (5%) Query: 252 VTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKK 311 V ER + D A R ++LS R++E+QE ER+ +AR LHD++GQ+LTA+K+NL + + Sbjct: 230 VAERTAALSD---ANSRLRILSRRLMEIQELERRAIARDLHDEIGQALTAIKMNLRELGE 286 Query: 312 -----MGSLEGPSLQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLA 366 + +G L + + I+ VL +R+L+LDLRP LD LGL+ ALR Y+ ++++ A Sbjct: 287 QRDGSTAAADGKPLSDSLQILDQVLRHIRNLALDLRPSMLDELGLVPALRWYIGRQAERA 346 Query: 367 NVNGWFESSGHDEQLHH---DIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLS 423 GW DE + ++E + FR+ QEA+TN+ RHA+ + V+++ Q+ L Sbjct: 347 ---GWKVQFLADEVMTRPSPEVEISCFRLTQEALTNVARHAKATVVEVRLEMGRRQLDLI 403 Query: 424 IRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMHLPVAP 482 IRD+G GFD R+ A +GTS GL MEER L GG M I SAP GTEI P+ P Sbjct: 404 IRDNGIGFDSNLIRTGARAGTSVGLSGMEERVRLAGGHMVIQSAPSTGTEIRATFPIGP 462 >ref|YP_001817716.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gb|ACB74116.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 644 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 154/512 (30%), Positives = 240/512 (46%), Gaps = 44/512 (8%) Query: 2 SIPLRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAAL-QAQPWDIVISDYSM 60 S P R+L V+D +A ++VR L R A + + + L AL + +D+V+ + Sbjct: 137 SRPRRILLVDDDPAEAEMLVRLLARRAPHLAIKTAANRSSGLEALVTGEEYDLVLGLHRP 196 Query: 61 PMFSGVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKS------AIGRLP 114 P E +K + P I+++ E+ GA D+ + R+ Sbjct: 197 PANDCFELIKTARDRGFHLPIIVLADSSAEEAVAAAFSHGASDFVVAPRRHAAELALRID 256 Query: 115 HAVDR-ELRDAQARRK-----QRASAQALREMQARFNAFMNAAPMPTWIKD--------- 159 A+DR EL A R + +R AL R + A + W + Sbjct: 257 LAIDRHELAVAGLRARTELADRRQLLAALGASDQRLKTALEAGRIGLWSWEVGTGHMEFS 316 Query: 160 ----AQLRYSYVNPAQSAFYGITPGDMDGLTDLELMSSGAAAASQENDRKVLEQKCELHT 215 AQ+ Y+ + A + D L +L +++ AA + Sbjct: 317 ARWKAQIGYAENEIGEDAAEWFSRCHPDDLANLHTLTARYLAAPWPD-----------FN 365 Query: 216 QETVFDHNHNARILDVVRFPISGEGKGD--MVAGLAIDVTEREQSRRDLELAIQRQQLLS 273 E H + ++ + + G+ + G IDVT+ +Q + D+ R Q LS Sbjct: 366 VEYRLKHKDGSWRCFLLHAALETDDPGEPRRMVGAQIDVTQLKQQQADIASTSARLQQLS 425 Query: 274 SRVIEVQERERQHLARGLHDDVGQSLTALKINLET---IKKMGSLEGPSLQNGIDIVTAV 330 R++ VQE ER+ LAR LHD++GQ LT KI+L++ + + G + G L+ + ++ + Sbjct: 426 RRLLNVQEMERRSLARELHDEIGQVLTVAKIHLQSTVLLPECGRVAG-RLKEPVALLDRL 484 Query: 331 LAQVRSLSLDLRPPQLDNLGLIAALRSYVEQ-KSKLANVNGWFESSGHDEQLHHDIENTA 389 LAQVRSLSL+LRPP LD+LGL+ AL + Q +S + + +E Sbjct: 485 LAQVRSLSLNLRPPLLDDLGLVPALHWLLHQHQSHTGGPRVHLATDPELARFDPTLETAC 544 Query: 390 FRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLL 449 FRI QEA+TN LRHAR Q + + + Q ++ L ++DDG GFD AR A G S GLL Sbjct: 545 FRIAQEALTNALRHARAQGVHLTLTVQDQKLRLRVQDDGVGFDATSARGRAERGGSLGLL 604 Query: 450 NMEERAVLVGGSMEITSAPGAGTEIVMHLPVA 481 M ERA+L GG++ + SAPG GTEI P++ Sbjct: 605 GMHERALLAGGTLTLLSAPGRGTEIEAIFPLS 636 >ref|NP_952707.1| sensory box/response regulator [Geobacter sulfurreducens PCA] gb|AAR35034.1| sensory box/response regulator [Geobacter sulfurreducens PCA] gb|ADI84490.2| response receiver sensor diguanylate cyclase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 420 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/290 (39%), Positives = 156/290 (53%), Gaps = 10/290 (3%) Query: 1 MSIPLRVLFVEDMEEDAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSM 60 M PLRVL +ED E+D FL+VR LKR F+ ERVD E++L A L + WDIV+SDY M Sbjct: 1 MPPPLRVLILEDSEDDYFLLVRALKRE-FDIVPERVDSEESLRANLCEKRWDIVLSDYFM 59 Query: 61 PMFSGVEALKLVKAHNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRE 120 P F + AL L+++ N PFIIVSG IGE AV+ MKAGA DY +K RL A+ RE Sbjct: 60 PQFDALAALTLIQSMNLDIPFIIVSGKIGEFEAVKAMKAGAHDYIMKGDYTRLIPAIRRE 119 Query: 121 LRDAQARRKQRASAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGITPG 180 LR+A R++QR + LRE A ++A P P + D + N A AF G T Sbjct: 120 LREAVIRQEQRRTDHELREQLHFRQALIDAIPAPIYFMDTTGIFLGCNKAFEAFSGHTQD 179 Query: 181 DMDGLTDLELMSSGAAAASQENDRKVLEQKCELHTQETVFDHNHNARILDVV----RFPI 236 ++ G T +LM A + DR++ E + E+V A + DV+ F Sbjct: 180 EIVGKTIYDLMPPSLAKHTDSADRELFEHGG-IQIYESVISFADGA-LHDVIFYKATFTT 237 Query: 237 SGEGKGDMVAGLAIDVTEREQSRRDLELAIQRQQL--LSSRVIEVQERER 284 + + G +V G +D+TER+Q+ L L L +R +E ER Sbjct: 238 TEKNIGGLV-GTILDITERKQTEERLRYMSTHDTLTGLYNRAYFQEEMER 286