BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0009.p (610 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775979.1| two component sensor histidine kinase [Herba... 1243 0.0 gb|EDZ39224.1| Multi-sensor signal transduction histidine kinase... 386 e-105 gb|EAY55888.1| Multi-sensor signal transduction histidine kinase... 382 e-103 ref|YP_001817834.1| multi-sensor signal transduction histidine k... 316 1e-83 ref|ZP_08185338.1| PAS domain S-box [Xanthomonas gardneri ATCC 1... 247 4e-63 ref|ZP_01687643.1| multi-sensor Signal Transduction Histidine Ki... 246 8e-63 ref|YP_001230060.1| multi-sensor signal transduction histidine k... 246 9e-63 ref|ZP_08275875.1| sensor histidine kinase/response regulator fu... 244 2e-62 ref|YP_001902166.1| two-component system sensor histidine kinase... 240 5e-61 ref|NP_638782.1| two-component system sensor protein [Xanthomona... 240 5e-61 >ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64071.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 633 Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 609/610 (99%), Positives = 609/610 (99%) Query: 1 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 60 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN Sbjct: 24 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 83 Query: 61 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 120 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV Sbjct: 84 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 143 Query: 121 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 180 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL Sbjct: 144 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 203 Query: 181 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 240 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE Sbjct: 204 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 263 Query: 241 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 300 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL Sbjct: 264 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 323 Query: 301 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 360 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL Sbjct: 324 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 383 Query: 361 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 420 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE Sbjct: 384 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 443 Query: 421 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 480 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ Sbjct: 444 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 503 Query: 481 VWENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 VWENLLSNAVKFSSKS QPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR Sbjct: 504 VWENLLSNAVKFSSKSEQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 563 Query: 541 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAGSGS 600 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAGSGS Sbjct: 564 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERREAGSGS 623 Query: 601 STFTNEAARP 610 STFTNEAARP Sbjct: 624 STFTNEAARP 633 >gb|EDZ39224.1| Multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 596 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/586 (38%), Positives = 343/586 (58%), Gaps = 19/586 (3%) Query: 16 IFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETNSALRETVGNSRGYVL 75 IF + +LL +G+ + + F Q + ++H+ V+ ++ S L++ RGY++ Sbjct: 16 IFLAIGILLWMGIVSLRF--LGSFLQESDRVEHSWMVLTSIDRLFSELQDAETGERGYII 73 Query: 76 SGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLVNQRL-------ALSR 128 + N + + +++ + V+ +QDL L+SD Q +R L+++RL AL + Sbjct: 74 TRNPSFLSPYQSAGKKVRGHLQDLEHLVSDRPSQEKRAMELGQLIDKRLFLLGNGVALGK 133 Query: 129 EILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADLTIFMVVSG 188 ++ P+ +L GK + D+IR + MK +E L +RS + + +V G Sbjct: 134 SGISPHPDALLMVMLRGKEVMDQIRHQTQSMKSSEYRRLRRRSLLFYRTKKKVLPLVGGG 193 Query: 189 SLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDESDKKIIKI 248 S+ ++ L L RE+DRR+ A+Q+A+ Y++E+ +LY+ APCGYHSVD + ++I Sbjct: 194 LAASVLMISLSSLFLSREIDRRVQAEQKARKYAEEVRNLYDYAPCGYHSVDR-EGIFLRI 252 Query: 249 NDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKRE-ISGIDLNYRRADG 307 N+TEL WLGY RE++ G+ +LL P Y Q ML+ E + + L + R DG Sbjct: 253 NETELSWLGYRREELEGKKRIFELLFPEDLPLYQNAFQG--MLRGEPVRDLRLRFLRKDG 310 Query: 308 SEFTALVNATAIPSRDRSKLIS-RTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKE 366 S L+N + + D K S R V+ D++D++ EE+I LN L + L N E Sbjct: 311 SVLPVLLNVS-VNRDDSGKFFSTRGVLLDMTDKRIDEEKILDLNRTLSERNRQLEVTNGE 369 Query: 367 LESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLL 426 LE FSYSVSHDLRAPLR+I G++ IL+EDYA +D +G + VIR N RKM LI+DLL Sbjct: 370 LEGFSYSVSHDLRAPLRSIDGFSRILQEDYAGKLDAEGERVIGVIRNNTRKMSNLIDDLL 429 Query: 427 KLAKSTTGELTLERFSMDDLVRQ-VIAGL---RRENPNVLFDVPPLEGAVANRGLITQVW 482 ++ + M+ L+R+ ++ G+ + V + PL A +R L+ QVW Sbjct: 430 AFSRLGKKAFSWSLVDMEALIREDILPGVLSGSEKGTGVDVTLSPLPRAWGDRTLLAQVW 489 Query: 483 ENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQE 542 NLLSNAVKFS K +P+VRV +VE EE +Y V DNGVGFDM+Y KLF FQRLH Q Sbjct: 490 TNLLSNAVKFSEKREKPSVRVEGRVETEEVVYTVRDNGVGFDMQYYDKLFKVFQRLHAQA 549 Query: 543 EYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSP 588 E+ GTG+GLA+VQR++ RH GRVWA+S+ EGA+F+FSLP + P Sbjct: 550 EFPGTGVGLAIVQRVIARHGGRVWAESQSNEGAAFHFSLPVRDSPP 595 >gb|EAY55888.1| Multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 596 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/585 (39%), Positives = 337/585 (57%), Gaps = 17/585 (2%) Query: 16 IFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETNSALRETVGNSRGYVL 75 IF + +LL +G+ S H + F Q + ++H+ V+ ++ S L++ RGY++ Sbjct: 16 IFLAIGILLWMGIV--SLHFLGSFLQESDRVEHSWMVLTSIDRLFSELQDAETGERGYLI 73 Query: 76 SGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLVNQRLALSREILALRP 135 + N + + +++ + V+ + DL L+SD Q R L+++RL L +AL Sbjct: 74 TRNPSFLSPYQSAEKEVRGHLHDLEHLVSDRPSQEMRAMELGKLIDKRLFLLGNGVALGR 133 Query: 136 EQARER-------VLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADLTIFMVVSG 188 A +L GK + D+IR MK +E L +RS + + +V G Sbjct: 134 SGAFPHRDALLMVMLRGKEVMDQIRHLTQSMKSSEYRRLRRRSLLFYRTRKKVLPLVGGG 193 Query: 189 SLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDESDKKIIKI 248 S+ ++VL L RE+DRR+ A+ +A+ Y++E+ DLY+ APCGYHSVD + ++I Sbjct: 194 LAASVLMIVLSSLFLSREIDRRVRAEHKARQYAEEVRDLYDYAPCGYHSVDH-EGTFVRI 252 Query: 249 NDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKRE-ISGIDLNYRRADG 307 N+TEL WLGY RE+V GR +LL+P Y Q ML+ E + + L + R DG Sbjct: 253 NETELSWLGYKREEVEGRKRIFELLSPEDLPLYQNAFQG--MLRGEPVRDLRLRFLRKDG 310 Query: 308 SEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKEL 367 + AL+NA+ I L +R V+ D++ + EE+I LN L + + L N EL Sbjct: 311 TVLPALLNASVIRDAFGRFLSTRGVLLDMTQKLIDEEKILDLNRTLSERNMQLEVTNGEL 370 Query: 368 ESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLK 427 E FSYSVSHDLRAPLR+I G++ IL+EDYA +D +G + VIR N RKM LI+DLL Sbjct: 371 EGFSYSVSHDLRAPLRSIDGFSRILQEDYAGKLDAEGERVIGVIRNNTRKMSNLIDDLLA 430 Query: 428 LAKSTTGELTLERFSMDDLVRQ-VIAGLRR---ENPNVLFDVPPLEGAVANRGLITQVWE 483 ++ M+ L+R+ ++ G+ + V + PL A + L+ QVW Sbjct: 431 FSRLGKKAFAWSLVDMEALIREDILPGILSGGGKGAGVEVTLSPLPRAWGDSTLLAQVWT 490 Query: 484 NLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEE 543 NLLSNAVKFS K +P+VRV +VE E +Y V DNGVGFDM+Y KLF FQRLH Q E Sbjct: 491 NLLSNAVKFSEKREKPSVRVEGKVEMGEVVYTVRDNGVGFDMQYYDKLFKVFQRLHAQAE 550 Query: 544 YAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSP 588 + GTG+GLA+VQR++ RH GRVWA+S+ EGA+F+FSLP + P Sbjct: 551 FPGTGVGLAIVQRVIARHGGRVWAESQLNEGAAFHFSLPARDGPP 595 >ref|YP_001817834.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gb|ACB74234.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 656 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 203/560 (36%), Positives = 305/560 (54%), Gaps = 35/560 (6%) Query: 45 WLQHTHTVINVLEETNSALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMS 104 W+ HTH V+ +E+ + L RG+VLSG+E+ + A M+ LR+L + Sbjct: 101 WVDHTHAVLREVEQVLANLLIVQSAGRGFVLSGSEDVLAPLNQSRVELAAAMEQLRKLTA 160 Query: 105 DNERQIERL-----------DSTEDLVNQRLALSREILALRPEQARERVLEGKALSDEIR 153 DN Q ERL + E+ + QR A + I P +L +A D R Sbjct: 161 DNPIQQERLRALAPVTERVVQAMEEQLQQRRATATVIGGEAPV-----LLRTQADVDRAR 215 Query: 154 RRFAEMKGNENALLAKRSQDTSASADLTIFMVVSGSLLSMALLVLVYSKLRREMDRRIDA 213 ++ E LLA+R + +A T+ V+ +++++ ++ +RR+ R+ + Sbjct: 216 EIIRAIRFEEQRLLAERMRAAQRTAHGTVTASVAATVVALLFVLASVWLVRRDFGERVRS 275 Query: 214 QQRAQAYSDEIEDLYNNAPCGYHSVDESDKKIIKINDTELKWLGYTREQVVGRMTHTDLL 273 +Q + + L++NAP VD+ + I++ N G+ R ++ GR +LL Sbjct: 276 EQALRQSQQMFKRLFDNAPDATVQVDQQGR-IVRANRQIEALFGWERGELSGRRID-ELL 333 Query: 274 APASAERYLRELQPQFMLKREIS---GIDLNYRRADGSEFTALVNATAIPSRDRSKLISR 330 P A R+ L F+ R G++L RR DGSEF V+ P + + Sbjct: 334 PPRFASRHSAHLAAYFVAPRTRPMGVGLELFGRRRDGSEFP--VDIMLSPLETEQGMQAL 391 Query: 331 TVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKELESFSYSVSHDLRAPLRAISGYAM 390 VI D+++RKR +E+I LN DL+ Q L VN ELE+FSYSVSHDLRAPLR I G+A Sbjct: 392 AVIRDVTERKRIDEQIRRLNLDLQLQNARLELVNNELEAFSYSVSHDLRAPLRHIDGFAS 451 Query: 391 ILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFSMDDLVRQV 450 +L + A +DEKG+ + +I R+M LI+DLL ++ G LE ++D Q+ Sbjct: 452 LLAKHAAGTLDEKGQRFITIISDAARRMGRLIDDLLTFSR--MGRAQLETMTVDQ--NQL 507 Query: 451 IAGLRRENP-----NVLFDVPPLEGAVANRGLITQVWENLLSNAVKFSSKSAQPAVRVSM 505 I + R+N + + + PL A+ ++ QVW NLL NAVK+S+++ P + V Sbjct: 508 ITDVIRDNELDRDQRIEWQLEPLPAVRADPAMLRQVWFNLLGNAVKYSARAEPPRIEVGW 567 Query: 506 QVEPEE---YIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHT 562 + +PE ++ V DNGVGFDMRYA KLFG FQRLH + E+ GTGIGLA V+RI++RH Sbjct: 568 RSDPENSASQVFFVRDNGVGFDMRYAAKLFGVFQRLHAESEFEGTGIGLANVRRIIMRHG 627 Query: 563 GRVWAQSKPGEGASFYFSLP 582 GRVWA+S PG GA+F+FSLP Sbjct: 628 GRVWAESTPGAGATFFFSLP 647 >ref|ZP_08185338.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] gb|EGD17040.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] Length = 603 Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 196/591 (33%), Positives = 310/591 (52%), Gaps = 34/591 (5%) Query: 18 FLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETNSALRET----VGNSRGY 73 FL+ ++ S+ + ++++ Q AVW+ H+ V + +A+R+T + S G Sbjct: 23 FLIVVVPSLLLQQMAHNA----NQAAVWVSHSQDVQETAQRLEAAMRDTESAALMRSHGV 78 Query: 74 VLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLVNQRLALSREI-LA 132 V E G R A + L L DN Q R+ + + +RL L+ I +A Sbjct: 79 VRPALLE---RMRRGRREALAAVHQLIVLTKDNPAQQVRMGRIQSTIERRLLLAERIAVA 135 Query: 133 LRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADLTIFMVVSGSLLS 192 P R +++ L++ IR E++ E+ LL RS T A+ + T + V+S + L+ Sbjct: 136 TDPALIRA-LIDDMTLNNPIRLLIDELQSAESKLLELRS--TRAAKERTHYAVLSWATLA 192 Query: 193 MALLVL--VYSKLRREMDRRIDAQQ---RAQAYSDEIEDLYNNAPCGYHSVDESDKKIIK 247 + LL+L V L+R++ RR+ A+Q RA + + P V DK+ I Sbjct: 193 VQLLLLGTVIWLLQRQIRRRLAAEQEYLRANGRASSVLQTVRE-PI----VLLDDKQRIM 247 Query: 248 INDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLK-REISGIDLNYRRAD 306 +++ L E+ M+ D+ + + + +L+ RE+ + R AD Sbjct: 248 LHNPAFAELYGLEERGNESMSLEDVGEGVWRDAQIHQRLADVLLRDRELWDYEHEQRGAD 307 Query: 307 GSEFTALVNATAIPSRDRS-KLISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNK 365 G T L+NA +P D + + + + DIS +K +++ I+ LN ++ + + VN+ Sbjct: 308 GVLRTMLINARRMPLPDTNDEDVVLMTVSDISLQKASQQRIQELNRQMEGKVDQVSEVNR 367 Query: 366 ELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDL 425 ELE+FSYSVSHDLRAPLR ++G++ L DA DEK R ++VI + R+M LI+DL Sbjct: 368 ELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDDL 427 Query: 426 LKLAKSTTGELTLERFSMDDLVRQVIAGL----RRENPN--VLFDVPPLEGAVANRGLIT 479 L ++ L L+ M LV + A L + EN V + + PL VA+ ++ Sbjct: 428 LVYSRLGRSALRLQAVDMQSLVSETRAILDSSVQSENTGHRVEWHIAPLPVLVADENMMR 487 Query: 480 QVWENLLSNAVKFSSKSAQPAVRVSMQVEPEE-YIYGVHDNGVGFDMRYAHKLFGTFQRL 538 Q+W NLL NAVK+S+K + V + P+ + + V DNG GFDM Y+ KLFG FQRL Sbjct: 488 QLWMNLLGNAVKYSAKREVAKIEVGYRPLPDGGHQFSVRDNGAGFDMEYSAKLFGVFQRL 547 Query: 539 HRQEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPS 589 H+ EYAGTGIGLA V+R++ RH GRVWA+ EGA+F+F LP +P+ Sbjct: 548 HKASEYAGTGIGLASVRRVLTRHGGRVWAEGVVDEGATFHFVLPPAHEAPN 598 >ref|ZP_01687643.1| multi-sensor Signal Transduction Histidine Kinase [Microscilla marina ATCC 23134] gb|EAY31406.1| multi-sensor Signal Transduction Histidine Kinase [Microscilla marina ATCC 23134] Length = 629 Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 211/356 (59%), Gaps = 27/356 (7%) Query: 241 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPA------SAERYLRELQPQFMLKRE 294 +D ++ +ND + T +++VG T LL P E+ ++ + P+ E Sbjct: 287 TDGQLTFVNDAYCHYFKKTCDELVG----TTLLPPIPEEDRNKIEKAIKSITPE----NE 338 Query: 295 ISGIDLNYRRADGSEFTAL-VNATAIPSRDRSKLIS-RTVIYDISDRKRAEEEIEALNAD 352 I ++L++R E + I ++ +L+S + V DI+ KR E++ Sbjct: 339 I--VNLDFRIVLNQEIHWHNWSFCGIFDQNSGQLMSYQAVGRDITRNKRNEQQ------- 389 Query: 353 LKRQALHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIR 412 L ++ L + NKE+ESFSYSVSHDLRAPLR+I G++ IL EDYA+ +DE+G+ L +I Sbjct: 390 LIKKTQELETANKEMESFSYSVSHDLRAPLRSIDGFSKILAEDYAEVLDEEGKRLLGIIS 449 Query: 413 RNVRKMDELINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRR--ENPNVLFDVPPLEG 470 N ++M ELI+DLL ++ + E+ F M +LV+++I R E+ V PL Sbjct: 450 DNSKQMAELIDDLLAFSRVSRKEVKKNTFDMSELVKEIIHDFTRLGEHTESQITVYPLNH 509 Query: 471 AVANRGLITQVWENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHK 530 ++ ++ Q+W NL+SNA+KFS S P + + + Y + DNGVGFDMRYAHK Sbjct: 510 IKSDMAMLKQLWINLISNALKFSKNSCPPMIEIGQKYINGTCAYYIKDNGVGFDMRYAHK 569 Query: 531 LFGTFQRLHRQEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGL 586 +FG FQRLHR+EE+AGTG+GLA+V RIV ++ G++W +S P +G FYF+LP + + Sbjct: 570 VFGVFQRLHRKEEFAGTGVGLAIVHRIVTKNKGKIWVESVPNKGTQFYFTLPPESI 625 >ref|YP_001230060.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gb|ABQ25487.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 859 Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 142/350 (40%), Positives = 202/350 (57%), Gaps = 7/350 (2%) Query: 238 VDESDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISG 297 V+ ++I N T LK GY R+Q++G T + ++E + E+ + K Sbjct: 509 VETKTREIQDCNITALKMFGYERDQLIGARTSCLHVTEENSEWFGSEMLKSYERKGYFE- 567 Query: 298 IDLNYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQ- 356 + +RADG+ F + T I D + + V+ DI++RKRAE+E LN L+++ Sbjct: 568 VLFQMKRADGTVFPSEHFVTPIYDSDGNITSNVCVVRDITERKRAEDESRRLNELLEQRV 627 Query: 357 ---ALHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRR 413 L + NKELE+F YSVSHDLR PLR I G+ I+ +DYAD +D+ GRE L+ I Sbjct: 628 GERTAELEASNKELEAFCYSVSHDLRTPLRGIDGFCSIVRQDYADKLDKPGREYLERIGS 687 Query: 414 NVRKMDELINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPN--VLFDVPPLEGA 471 +M +LI+DLL L+ T +LT + + L R + P+ V F++ A Sbjct: 688 AAVRMGQLIDDLLNLSMVTRSQLTYDMVDLSHLARDIAQEFLLLEPDRRVEFEIADGVMA 747 Query: 472 VANRGLITQVWENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKL 531 A+R LI EN+L NA KFSS+ + + ++IY V DNGVGFDM YAHKL Sbjct: 748 KADRRLIRSALENMLHNAWKFSSREQCTRIEFGVDTSEGDHIYYVRDNGVGFDMIYAHKL 807 Query: 532 FGTFQRLHRQEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSL 581 F FQRLH E+ GTG+GLA VQRIV RH GRVW +++PG+GA+F+F+L Sbjct: 808 FRPFQRLHGMTEFVGTGVGLASVQRIVARHGGRVWVEAEPGKGATFFFTL 857 >ref|ZP_08275875.1| sensor histidine kinase/response regulator fusion protein (sensor for arcA) [Oxalobacteraceae bacterium IMCC9480] gb|EGF30655.1| sensor histidine kinase/response regulator fusion protein (sensor for arcA) [Oxalobacteraceae bacterium IMCC9480] Length = 466 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/252 (47%), Positives = 166/252 (65%), Gaps = 2/252 (0%) Query: 339 RKRAEEEIEALNADLKRQALHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAD 398 R+ A+ + N+ L ++A L + NKELESFSYSVSHDLR PLRA+SGYA + EEDY D Sbjct: 215 RRSADLALAGANSALMQRACQLENTNKELESFSYSVSHDLRIPLRAVSGYARMFEEDYGD 274 Query: 399 AIDEKGREQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRREN 458 +D +G L VIR N ++M +LI+DLL ++ + ER M LV I +RR+ Sbjct: 275 RVDAEGLRLLAVIRDNSKRMGDLIDDLLAFSRFGRQAMQQERIDMRSLVDSAIRLVRRDG 334 Query: 459 PNVL--FDVPPLEGAVANRGLITQVWENLLSNAVKFSSKSAQPAVRVSMQVEPEEYIYGV 516 +V ++ L V + L+ QVW NLLSNA K+S+ A P +R++ + E +Y + Sbjct: 335 DDVTVHIEIGNLPRGVGDPALLQQVWVNLLSNAFKYSAMRAPPVIRIAGTDDATETVYSI 394 Query: 517 HDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGAS 576 DNGVGFDM+Y KLFG FQRLH + + GTG+GLA+ QRIV RH GR+WA++ +GA+ Sbjct: 395 ADNGVGFDMQYYGKLFGVFQRLHSADAFPGTGVGLAIAQRIVTRHGGRIWAEAVVDQGAT 454 Query: 577 FYFSLPRKGLSP 588 FYF+LP++ +SP Sbjct: 455 FYFALPKQEISP 466 >ref|YP_001902166.1| two-component system sensor histidine kinase [Xanthomonas campestris pv. campestris str. B100] emb|CAP50100.1| two-component system sensor histidine kinase [Xanthomonas campestris pv. campestris] Length = 603 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 184/577 (31%), Positives = 295/577 (51%), Gaps = 68/577 (11%) Query: 44 VWLQHTHTVINVLEETNSALRETV--------GNSRGYVLSGNEEYRTSFEAGVRHVQAL 95 VW+ H+ V + +++R+T G R ++ + RT + H+ AL Sbjct: 45 VWVSHSQDVQETAQRLEASMRDTESAAMMRSHGVDRPVLVERMRQGRTEAMKAITHLIAL 104 Query: 96 MQDLRRLMSDNERQIERLDSTEDLVNQRLALSREILALR-PEQARERVLEGKALSDEIRR 154 +D N Q R+ + + +RL L+ I R PEQ R ++E +S+ IR Sbjct: 105 TKD-------NPAQQVRMGRIQSTIERRLLLAERIAVTRAPEQIRA-LIEEMTVSNPIRE 156 Query: 155 RFAEMKGNENALLAKRSQDTSASADLTIFMVVSGSLLSMALLVL--VYSKLRREMDRRID 212 +++ E LL+ R + A + + V+S + L++ LL+L V L+R++ RR+ Sbjct: 157 LIGDLQTAEGRLLSVR--NARAERERLHYKVLSWATLAVQLLLLGTVIWLLQRQIRRRLA 214 Query: 213 AQQ-------RAQAYSDEIED------------LYNNAPCGYHSVDESDKKIIKINDTEL 253 A+Q RA + + + L+N A + ++E +++ ++D Sbjct: 215 AEQEYLRASGRAGSVLQTVREPIVLLDARQRIVLHNPAFAELYGLEERGNELMLLDD--- 271 Query: 254 KWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDLNYRRADGSEFTAL 313 VG D P +R L + RE+ + R ADG T L Sbjct: 272 ----------VGDGAWRD---PQIHQR----LADVLLRDRELWDFEHEQRGADGVLRTML 314 Query: 314 VNATAIP-SRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKELESFSY 372 +NA +P D + + + DIS +K +++ I+ LN L+ + + VN+ELE+FSY Sbjct: 315 INARRMPLPDDGEEEVVLMTVSDISLQKVSQQRIQELNRQLEGKVEQVSEVNRELEAFSY 374 Query: 373 SVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKST 432 SVSHDLRAPLR ++G++ L DA DEK R ++VI + R+M LI+DLL ++ Sbjct: 375 SVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDDLLVYSRLG 434 Query: 433 TGELTLERFSMDDLV---RQVI-AGLRRENPN--VLFDVPPLEGAVANRGLITQVWENLL 486 L L+ M LV R ++ A ++ EN V + + PL +A+ ++ Q+W NL+ Sbjct: 435 RSALRLQAVDMQSLVAETRAILDANVQSENTGHRVDWHIAPLPVLIADENMMRQLWMNLM 494 Query: 487 SNAVKFSSKSAQPAVRVSMQVEPEE-YIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYA 545 NAVK+S+K +++ + P+ + + V DNG GFDM Y+ KLFG FQRLH+ EY Sbjct: 495 GNAVKYSTKREVAKIQIGYEPMPDGGHYFTVRDNGAGFDMDYSGKLFGVFQRLHKVSEYP 554 Query: 546 GTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLP 582 GTGIGLA V+R++ RH GRVWA+ EGA+F+F LP Sbjct: 555 GTGIGLASVRRVLARHGGRVWAEGVVDEGATFHFVLP 591 >ref|NP_638782.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM42706.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 603 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 184/577 (31%), Positives = 295/577 (51%), Gaps = 68/577 (11%) Query: 44 VWLQHTHTVINVLEETNSALRETV--------GNSRGYVLSGNEEYRTSFEAGVRHVQAL 95 VW+ H+ V + +++R+T G R ++ + RT + H+ AL Sbjct: 45 VWVSHSQDVQETAQRLEASMRDTESAAMMRSHGVDRPVLVERMRQGRTEAMKAITHLIAL 104 Query: 96 MQDLRRLMSDNERQIERLDSTEDLVNQRLALSREILALR-PEQARERVLEGKALSDEIRR 154 +D N Q R+ + + +RL L+ I R PEQ R ++E +S+ IR Sbjct: 105 TKD-------NPCQQVRMGRIQSTIERRLLLAERIAVTRAPEQIRA-LIEEMTVSNPIRE 156 Query: 155 RFAEMKGNENALLAKRSQDTSASADLTIFMVVSGSLLSMALLVL--VYSKLRREMDRRID 212 +++ E LL+ R + A + + V+S + L++ LL+L V L+R++ RR+ Sbjct: 157 LIGDLQTAEGRLLSVR--NARAERERLHYKVLSWATLAVQLLLLGTVIWLLQRQIRRRLA 214 Query: 213 AQQ-------RAQAYSDEIED------------LYNNAPCGYHSVDESDKKIIKINDTEL 253 A+Q RA + + + L+N A + ++E +++ ++D Sbjct: 215 AEQEYLRASGRAGSVLQTVREPIVLLDARQRIVLHNPAFAELYGLEERGNELMLLDD--- 271 Query: 254 KWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDLNYRRADGSEFTAL 313 VG D P +R L + RE+ + R ADG T L Sbjct: 272 ----------VGDGAWRD---PQIHQR----LADVLLRDRELWDFEHEQRGADGVLRTML 314 Query: 314 VNATAIP-SRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKELESFSY 372 +NA +P D + + + DIS +K +++ I+ LN L+ + + VN+ELE+FSY Sbjct: 315 INARRMPLPDDGEEEVVLMTVSDISLQKVSQQRIQELNRQLEGKVEQVSEVNRELEAFSY 374 Query: 373 SVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKST 432 SVSHDLRAPLR ++G++ L DA DEK R ++VI + R+M LI+DLL ++ Sbjct: 375 SVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDDLLVYSRLG 434 Query: 433 TGELTLERFSMDDLV---RQVI-AGLRRENPN--VLFDVPPLEGAVANRGLITQVWENLL 486 L L+ M LV R ++ A ++ EN V + + PL +A+ ++ Q+W NL+ Sbjct: 435 RSALRLQAVDMQSLVAETRAILDANVQSENTGHRVDWHIAPLPVLIADENMMRQLWMNLM 494 Query: 487 SNAVKFSSKSAQPAVRVSMQVEPEE-YIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYA 545 NAVK+S+K +++ + P+ + + V DNG GFDM Y+ KLFG FQRLH+ EY Sbjct: 495 GNAVKYSTKREVAKIQIGYEPMPDGGHYFTVRDNGAGFDMDYSGKLFGVFQRLHKVSEYP 554 Query: 546 GTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLP 582 GTGIGLA V+R++ RH GRVWA+ EGA+F+F LP Sbjct: 555 GTGIGLASVRRVLARHGGRVWAEGVVDEGATFHFVLP 591