BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0007.p (225 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775981.1| PilP assembly chaperone transmembrane protei... 451 e-125 ref|YP_002218476.1| chaperone protein EcpD [Acidithiobacillus fe... 136 3e-30 ref|YP_368636.1| P pilus assembly protein chaperone PapD-like [B... 122 3e-26 gb|EGD05163.1| P pilus assembly protein [Burkholderia sp. TJI49] 115 5e-24 ref|NP_520815.1| pili assembly chaperone transmembrane protein [... 113 2e-23 ref|ZP_08497616.1| pili assembly chaperone [Enterobacter hormaec... 113 2e-23 ref|YP_004134243.1| hypothetical protein Mesci_6064 [Mesorhizobi... 110 1e-22 ref|YP_003941812.1| P pilus assembly protein chaperone PapD-like... 110 1e-22 ref|NP_107981.1| hypothetical protein mll7725 [Mesorhizobium lot... 110 1e-22 ref|YP_001914086.1| pili assembly chaperone [Xanthomonas oryzae ... 110 2e-22 >ref|YP_003775981.1| PilP assembly chaperone transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64073.1| PilP assembly chaperone transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/225 (99%), Positives = 225/225 (100%) Query: 1 VLTITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDE 60 +LTITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDE Sbjct: 24 LLTITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDE 83 Query: 61 LQPTQNLIISPPVFNLAPGASQVIRVVSRQAAGASEIAFRLLIDEIPSSSEGALISFKFR 120 LQPTQNLIISPPVFNLAPGASQVIRVVSRQAAGASEIAFRLLIDEIPSSSEGALISFKFR Sbjct: 84 LQPTQNLIISPPVFNLAPGASQVIRVVSRQAAGASEIAFRLLIDEIPSSSEGALISFKFR 143 Query: 121 ISMPVFIAANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGG 180 ISMPVFIAANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGG Sbjct: 144 ISMPVFIAANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGG 203 Query: 181 NPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVAP 225 NPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVAP Sbjct: 204 NPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVAP 248 >ref|YP_002218476.1| chaperone protein EcpD [Acidithiobacillus ferrooxidans ATCC 53993] ref|YP_002424521.1| pilus chaperone protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gb|ACH82269.1| chaperone protein EcpD [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACK80920.1| pilus chaperone protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 247 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 6 AVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQ 65 AV A A + + PV+++++ + A + ++N+ N ++ QVR + W QV ++L PT Sbjct: 24 AVGIASAVSLTVLPVIIQMAPGQKATTLTVINHGNREIAFQVRTFAWTQVSGHNKLTPTA 83 Query: 66 NLIISPPVFNLAPGASQVIRVVSRQAAGASEIAFRLLIDEIPSSSEGALISFKFRISMPV 125 L+ SPP+ LAPG Q+IR+V R+ E ++R+L+DEIP + ++ R+S+P+ Sbjct: 84 ELLASPPLGTLAPGGRQIIRMVLRRPPQGREASYRILLDEIPPPAAPGMVRIALRMSIPI 143 Query: 126 FIAANT--APKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPY 183 F T AP + + G+ L+ N G R L D+ L P G + + NPY Sbjct: 144 FAEPQTRVAPHVLWQVERRNGQ-TFLVGINDGTRHETLRDIKLQAPGGGTLKVESNINPY 202 Query: 184 TLAGLT-RQYLIETETPLAAGSKVKLTANSDAGPIDTELTV 223 LAG T R +++ +PLA G+ ++LTA ++ G ID + V Sbjct: 203 ILAGATMRWHIVTPSSPLAPGAVLQLTARTNTGHIDQSVRV 243 >ref|YP_368636.1| P pilus assembly protein chaperone PapD-like [Burkholderia sp. 383] gb|ABB07992.1| P pilus assembly protein chaperone PapD-like protein [Burkholderia sp. 383] Length = 239 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 4 ITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQP 63 + A A A++ +I+PV +E S TA + + N V QVR + W+Q D +D L P Sbjct: 12 LCAAGTAHAASLQISPVTIEFGSDDTAAGITLHNPGERPVYGQVRVFRWDQADGQDTLTP 71 Query: 64 TQNLIISPPVFNLAPGASQVIRVV--SRQAAGASEIAFRLLIDEIPSSSEGAL--ISFKF 119 TQ+L+ SPP+ + + Q+IRVV SR AG E ++RLLIDE+P E +S + Sbjct: 72 TQDLVASPPLIEVGTQSEQLIRVVRASRAPAGI-EQSYRLLIDELPQPGEAPTNGVSIRL 130 Query: 120 RISMPVFI--AANTAPKLQLDYQ-LHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINA 176 R S+PVF+ A N AP QLD+ LH+ L V+N G RRA+L + L +G Sbjct: 131 RYSIPVFVEPATNGAP--QLDWALLHSNGGWVLRVRNGGARRAQLASVELVTGDGHAYPL 188 Query: 177 PAGGNPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVAP 225 G Y LAG T Q+ + + G KV + A ++ P + V P Sbjct: 189 THGLLGYALAGRTGQWSVPLPAGVTLGGKVTVRAAVNSQPASAVVAVEP 237 >gb|EGD05163.1| P pilus assembly protein [Burkholderia sp. TJI49] Length = 239 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 114/214 (53%), Gaps = 4/214 (1%) Query: 16 EIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLIISPPVFN 75 +I+PV +E ++ TA + + N V QVR + W+QVD +D L PTQ+L+ SPP+ Sbjct: 24 QISPVSIEFAADDTASGITLRNPGERPVYGQVRVFRWDQVDGQDTLTPTQDLVASPPLIQ 83 Query: 76 LAPGASQVIRVV-SRQAAGASEIAFRLLIDEIPSSSEG--ALISFKFRISMPVFIAANTA 132 +A + Q+IRVV + A +E ++RLLIDE+P E + ++ + R S+PVF+ T Sbjct: 84 VATQSDQLIRVVRASHAPSGAEQSYRLLIDELPQPGEAPTSGVAIRLRYSIPVFVEPATD 143 Query: 133 PKLQLDYQ-LHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPYTLAGLTRQ 191 QLD+ L L V+N G RRA+L + L +G K G Y LAG T Q Sbjct: 144 GAPQLDWTLLRRNGDWLLRVRNLGARRAQLASVELVTADGHKYPLTRGLLGYALAGRTGQ 203 Query: 192 YLIETETPLAAGSKVKLTANSDAGPIDTELTVAP 225 + + +A KV + A ++ P + V P Sbjct: 204 WSVPLPAGVALTGKVTVRAAVNSQPASAVVAVEP 237 >ref|NP_520815.1| pili assembly chaperone transmembrane protein [Ralstonia solanacearum GMI1000] emb|CAD16401.1| putative pili assembly chaperone transmembrane protein [Ralstonia solanacearum GMI1000] Length = 253 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 8/220 (3%) Query: 10 ALASNFEIAPVVLELSSARTAGVVKIVNN-DNHNVSLQVRAYEWNQVDSKDELQPTQNLI 68 A A+NF + PV +ELS R + + + N + +V +++RA W Q + +D P Q+L+ Sbjct: 29 AQAANFTVTPVRVELSQQRPSAALTVKNEMTDESVVVELRAVAWTQTNGEDVYAPAQDLL 88 Query: 69 ISPPVFNLAPGASQVIRVVSRQ-AAGASEIAFRLLIDEIPSSSEGAL--ISFKFRISMPV 125 +PP+F LAPGA+QVIRV R A E+++RL + E+P + + + +PV Sbjct: 89 ATPPIFTLAPGATQVIRVGLRHPPADDGEVSYRLFLREVPPPPKPGFAGVQIALEMRLPV 148 Query: 126 FIAANT--APKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPY 183 F T AP+L+ + L V N GN A++ +L +T P ++ A Y Sbjct: 149 FAKPRTPAAPQLKWRAEPLPDGALALSVTNDGNAHAQVANLVVTAPGAERPVATYPEFAY 208 Query: 184 TLAGLTRQYLIET--ETPLAAGSKVKLTANSDAGPIDTEL 221 L G TR+ +++ + P G + L A SDAG ID+ L Sbjct: 209 VLPGQTRRLVLKRGPDAPAVTGGTLHLKAYSDAGDIDSAL 248 >ref|ZP_08497616.1| pili assembly chaperone [Enterobacter hormaechei ATCC 49162] gb|EGK61609.1| pili assembly chaperone [Enterobacter hormaechei ATCC 49162] Length = 259 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 8/211 (3%) Query: 10 ALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLII 69 ALA+ ++APV L++ S + A V + N+ + Q+R YEW+Q + KD L+ T+ ++ Sbjct: 22 ALAATLQVAPVTLDMQSGQRATAVYLTNSGKTAIHAQIRVYEWSQKNGKDVLEATEKVVS 81 Query: 70 SPPVFNLAPGASQVIRVVSRQ-AAGASEIAFRLLIDEIPSSSEGA----LISFKFRISMP 124 SP + +LAPG Q++R++ Q A E ++RL+IDE+P ++ A + F R S+P Sbjct: 82 SPAMTSLAPGQQQLVRIIVMQPGAHKQEQSYRLVIDELPDAASRAANPSAVHFLLRYSIP 141 Query: 125 VFIA-ANTAPKLQLDYQLHAGK-PARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNP 182 VFIA + T P Q D + PA L N+GNR RL L + +G+ + G Sbjct: 142 VFIAGSQTTPLSQDDLSCEQAEIPATLRCYNAGNRHIRLSHLQVLTASGQVAGSVKGLAG 201 Query: 183 YTLAGLTRQYLIETETPLAAGSKVKLTANSD 213 Y L G T ++ +TP + S ++ N D Sbjct: 202 YVLPGQTALVPLK-QTPRHSLSALRAYINDD 231 >ref|YP_004134243.1| hypothetical protein Mesci_6064 [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV15069.1| hypothetical protein Mesci_6064 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 239 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 2 LTITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDEL 61 L + V + A++ +AP LEL + +A V+ + N+ +++Q+R + W Q D ++L Sbjct: 13 LLLLCVSLSAAASLRVAPTSLELIAPDSAAVLNLHNDAKRPINVQIRVFRWRQADGVEQL 72 Query: 62 QPTQNLIISPPVFNLAPGASQVIRVVS-RQAAGASEIAFRLLIDEI--PSSSEGALISFK 118 +PT +++ SPP + P A +RV+ +A +E ++RLL+DE+ PS + ++ Sbjct: 73 EPTTDVVASPPSTQVGPNADYSVRVLRVSKARVKTEESYRLLVDELPDPSRRKAGTVTLV 132 Query: 119 FRISMPVFIA--ANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINA 176 R S+PVF + AP + G+ L +N+G R RL ++ LT GKK+ + Sbjct: 133 LRYSVPVFFRNPDSKAPDVSFSMS-RKGRSLVLTARNNGESRLRLSNIDLT-QGGKKVAS 190 Query: 177 PAGGNPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTV 223 +G Y L G T Q+ I + LAA S V L A SD GP D + + Sbjct: 191 RSGLVGYILGGATMQWPIGSSKSLAA-SSVVLKAQSDFGPFDAPVAI 236 >ref|YP_003941812.1| P pilus assembly protein chaperone PapD-like protein [Enterobacter cloacae SCF1] gb|ADO48528.1| P pilus assembly protein chaperone PapD-like protein [Enterobacter cloacae SCF1] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 111/218 (50%), Gaps = 8/218 (3%) Query: 3 TITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQ 62 +I AVP A AS +IAPV L L + A + + N ++ ++ QVR Y W Q D+L Sbjct: 18 SIIAVPHAAASGLQIAPVTLTLQGTQNADGIWLSNEGDNAINAQVRVYRWTQSGFADQLS 77 Query: 63 PTQNLIISPPVFNLAPGASQVIRVV-SRQAAGASEIAFRLLIDEIPSSS-EGALISFKFR 120 +Q L ISPP+ LAPG Q+IRV+ + +G E A+RL IDE+P + + F R Sbjct: 78 SSQGLAISPPMLALAPGERQLIRVIRTGPPSGQVESAYRLSIDELPPPKLQRNKLQFVLR 137 Query: 121 ISMPVFIA----ANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINA 176 S+PVFI A + KLQ Q H L V N GN A+L L +G +I Sbjct: 138 YSVPVFIQPVTDAQASAKLQWKLQ-HIDGNTFLEVNNQGNSHAQLSAATLIGASGTRIAI 196 Query: 177 PAGGNPYTLAGLTRQYLIE-TETPLAAGSKVKLTANSD 213 G Y L G T ++++ + G KV++T N Sbjct: 197 TPGLLGYVLPGSTMRWILSPSANGTHHGGKVEVTINGQ 234 >ref|NP_107981.1| hypothetical protein mll7725 [Mesorhizobium loti MAFF303099] dbj|BAB54126.1| mll7725 [Mesorhizobium loti MAFF303099] Length = 272 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 7/212 (3%) Query: 16 EIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLIISPPVFN 75 +AP +E+ + +A + + N+ +++Q+R + W Q + L+PT +++ SPP Sbjct: 61 RVAPTNIEMIAPDSAAALTLRNDAKQPINVQIRVFRWTQEGGIERLEPTSDVVASPPAAK 120 Query: 76 LAPGASQVIRVVS-RQAAGASEIAFRLLIDEI--PSSSEGALISFKFRISMPVFIAANTA 132 L PGA ++RVV ++A A E ++R++IDE+ PS + +S R S+PVF A Sbjct: 121 LGPGADYLVRVVRVSKSAVAGEESYRVIIDELPDPSRKKAGTVSLVLRYSVPVFFRNPDA 180 Query: 133 PKLQLDYQLHA-GKPARLMVQNSGNRRARLLDLALTLPNGKKINAPAGGNPYTLAGLTRQ 191 + + L G+ L +N+G R RL DL LT +G+K+ G Y L G T Q Sbjct: 181 AAPDVSWSLSGKGRGLLLTAKNTGESRLRLSDLTLT-QSGRKLGNRNGLVGYVLGGATMQ 239 Query: 192 YLIETETPLAAGSKVKLTANSDAGPIDTELTV 223 + I +T +G V L+A SD GP D +++ Sbjct: 240 WPIAGKT--LSGGAVLLSAQSDFGPFDANVSI 269 >ref|YP_001914086.1| pili assembly chaperone [Xanthomonas oryzae pv. oryzae PXO99A] gb|ACD59554.1| pili assembly chaperone [Xanthomonas oryzae pv. oryzae PXO99A] Length = 235 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 111/192 (57%), Gaps = 11/192 (5%) Query: 9 PALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDSKDELQPTQNLI 68 PA A++ ++AP L LS+ +TA + + N+ + V +Q RAY WNQ D +D+L+PTQ+++ Sbjct: 13 PAHAASLQLAPTSLSLSAQQTADGLWLSNSGSAPVQVQTRAYRWNQRDGQDQLEPTQDVL 72 Query: 69 ISPPVFNLAPGASQVIRVV-SRQAAGASEIAFRLLIDEIPSS-SEGALISFKFRISMPVF 126 +SPP+ LA G Q+IRV+ + A E +R+++DE+PS+ ++ + F R S+P+F Sbjct: 73 VSPPMRTLAAGERQLIRVIRAGPAPTGQEQCYRIIVDELPSTDTDRKGMQFVLRYSVPIF 132 Query: 127 I--AANTAPKLQLDYQLHAGKPARLMVQ--NSGNRRARLLDLALTLPNGKK--INAPAGG 180 + NT P L + AG + +Q N+GN A++ DL + K +N G Sbjct: 133 LLPPGNTEPAPTLRAHVVAGSDGKAQIQISNTGNGHAQVADLRHQVDGATKTTLNGLVG- 191 Query: 181 NPYTLAGLTRQY 192 Y L G T ++ Sbjct: 192 --YVLPGQTMRW 201