BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0004.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775984.1| signal peptide protein [Herbaspirillum serop... 318 1e-85 ref|ZP_02062624.1| spore coat protein [Rickettsiella grylli] >gi... 144 5e-33 ref|NP_107982.1| spore coat protein U precursor [Mesorhizobium l... 140 5e-32 ref|YP_745148.1| protein U [Granulibacter bethesdensis CGDNIH1] ... 135 2e-30 ref|YP_004552187.1| Spore coat protein U [Sinorhizobium meliloti... 135 2e-30 gb|AEG71088.1| conserved hypothetical protein [Ralstonia solanac... 132 2e-29 ref|ZP_00942642.1| Protein U precursor [Ralstonia solanacearum U... 132 2e-29 emb|CAQ18215.1| conserved hypothetical protein [Ralstonia solana... 132 2e-29 ref|YP_003748872.1| hypothetical protein RCFBP_mp30421 [Ralstoni... 131 3e-29 ref|NP_523059.1| signal peptide protein [Ralstonia solanacearum ... 130 6e-29 >ref|YP_003775984.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ64076.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 166 Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 165/166 (99%), Positives = 165/166 (99%) Query: 1 MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYNQA 60 MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAY QA Sbjct: 1 MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQA 60 Query: 61 VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120 VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG Sbjct: 61 VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120 Query: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY Sbjct: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166 >ref|ZP_02062624.1| spore coat protein [Rickettsiella grylli] gb|EDP46629.1| spore coat protein [Rickettsiella grylli] Length = 161 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/150 (52%), Positives = 105/150 (70%), Gaps = 4/150 (2%) Query: 19 LTCAAPASFAATASASLTISASVVASCTVVGS--SIAFGAYNQAVVNQTGSITVQCTNGT 76 L + PA FA T + +L I+A+V A+C + G+ S+ FG Y A+ N TG + V CTNGT Sbjct: 14 LLLSHPA-FAPTTTGNLPINATVNAAC-IFGNITSVNFGNYTGAINNATGGVEVNCTNGT 71 Query: 77 AYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLA 136 YN+ L GT GATV+ R+M+ + G+L YAL+R+S R+ NWG TIGTDT+ GTG+G+ Sbjct: 72 TYNISLGPGTFPGATVTTRQMTGTPTGSLAYALFRNSGRTQNWGQTIGTDTVAGTGTGVI 131 Query: 137 QTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166 Q TVYGQI A TP AGSY+DTV +T+TY Sbjct: 132 QPYTVYGQIAAGLTPAAGSYNDTVVITITY 161 >ref|NP_107982.1| spore coat protein U precursor [Mesorhizobium loti MAFF303099] dbj|BAB54127.1| mll7726 [Mesorhizobium loti MAFF303099] Length = 165 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 3/141 (2%) Query: 29 ATASASLTISASVVASCTV-VGSSIAFGAYN--QAVVNQTGSITVQCTNGTAYNVGLDAG 85 ATA+ ++T+ ++ A C V + + FG A V+QT +I+VQCTN T YNVGL AG Sbjct: 25 ATATGNMTVRITIQAECKVQTATDMDFGTNGVIDANVDQTSTISVQCTNSTPYNVGLSAG 84 Query: 86 TGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQI 145 G GATV+ RKM+ LNY+LYRD AR+ WG+TIGTDT+ GTG+G AQ LTVYG++ Sbjct: 85 VGAGATVAVRKMTGPAAAVLNYSLYRDVARAQLWGTTIGTDTVAGTGNGAAQPLTVYGRV 144 Query: 146 PAAQTPLAGSYSDTVTVTLTY 166 P TP AG Y+DTV +T+TY Sbjct: 145 PPQTTPGAGVYTDTVAITVTY 165 >ref|YP_745148.1| protein U [Granulibacter bethesdensis CGDNIH1] gb|ABI62225.1| protein U precursor [Granulibacter bethesdensis CGDNIH1] Length = 172 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISAS--VVASCTVVGSSIAFGAYN 58 +F + KN IAA + + P + A+ + T + V ASC + ++++FG Y+ Sbjct: 5 IFSSNKNSRIAAIILVGAVNSLIPLKSISAATTTTTFQVTATVQASCIIQATNLSFGNYS 64 Query: 59 QAVVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSN 118 + + T +I V CTN T YNVGL AGTG+GATVSNRKMS + L YALY D++RS+N Sbjct: 65 GSQTDATSTIQVTCTNSTPYNVGLSAGTGSGATVSNRKMSLNSTSALPYALYSDASRSTN 124 Query: 119 WGSTIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166 WG+T DT++GTG+G AQ+LTVYG+I P GSY+DT+T T+ + Sbjct: 125 WGNTPNQDTVSGTGNGSAQSLTVYGRIQTGNYPTPGSYADTITATVNF 172 >ref|YP_004552187.1| Spore coat protein U [Sinorhizobium meliloti AK83] gb|AEG58263.1| Spore coat protein U [Sinorhizobium meliloti AK83] Length = 165 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 4/158 (2%) Query: 12 ACVAAATLTCAAPASFAATASASLTISASVVASCTVVGS-SIAFGAYN--QAVVNQTGSI 68 A VAAA +T PA ATA+ ++T+ ++ A C + S + FG A V+QT +I Sbjct: 9 AIVAAAMMTLLGPA-MGATATGNMTVRITIQAECKIQTSGDLDFGTRGVIDANVDQTSTI 67 Query: 69 TVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTL 128 VQCT+G YNVGL AG G GAT S RKM+ T+NYALYRD+AR+ WG TIGTDT+ Sbjct: 68 GVQCTSGQTYNVGLSAGAGAGATTSIRKMTGPAAATINYALYRDTARTQLWGVTIGTDTV 127 Query: 129 TGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166 GTG+G Q LTVYG++P TP AG Y+DTV +T+TY Sbjct: 128 AGTGNGDVQNLTVYGRVPPQVTPAAGVYTDTVAITVTY 165 >gb|AEG71088.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 167 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/141 (48%), Positives = 102/141 (72%), Gaps = 2/141 (1%) Query: 28 AATASASLTISASVVASCTVVGSSIAFGAYN--QAVVNQTGSITVQCTNGTAYNVGLDAG 85 AAT + + T+S ++ A C++ +++ FG A V+QT +++V C+N AYNVG DAG Sbjct: 27 AATKTTTFTVSLTLQADCSISANTLNFGTQGVLAANVDQTTTVSVTCSNTAAYNVGFDAG 86 Query: 86 TGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQI 145 T TG+TV+ R ++ SG T+ + LY DSAR+ WG+T+GTDT++GTGSG AQ LTVYG++ Sbjct: 87 TATGSTVAARLLAGSGAATVGFQLYSDSARTQIWGNTVGTDTVSGTGSGTAQVLTVYGRV 146 Query: 146 PAAQTPLAGSYSDTVTVTLTY 166 P+ +P AG+YS T+T T+T+ Sbjct: 147 PSQTSPAAGAYSTTITATITF 167 >ref|ZP_00942642.1| Protein U precursor [Ralstonia solanacearum UW551] ref|YP_002257277.1| hypothetical protein RSIPO_03579 [Ralstonia solanacearum IPO1609] gb|EAP74781.1| Protein U precursor [Ralstonia solanacearum UW551] emb|CAQ59161.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 173 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/141 (48%), Positives = 102/141 (72%), Gaps = 2/141 (1%) Query: 28 AATASASLTISASVVASCTVVGSSIAFGAYN--QAVVNQTGSITVQCTNGTAYNVGLDAG 85 AAT + + T+S ++ A C++ +++ FG A V+QT +++V C+N AYNVG DAG Sbjct: 33 AATKTTTFTVSLTLQADCSIAANTLNFGTQGVLAANVDQTTTVSVTCSNTAAYNVGFDAG 92 Query: 86 TGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQI 145 T TG+TV+ R ++ SG T+ + LY DSAR+ WG+T+GTDT++GTGSG AQ LTVYG++ Sbjct: 93 TTTGSTVAARLLAGSGAATVGFQLYSDSARTQIWGNTVGTDTVSGTGSGTAQVLTVYGRV 152 Query: 146 PAAQTPLAGSYSDTVTVTLTY 166 P+ +P AG+YS T+T T+T+ Sbjct: 153 PSQTSPAAGAYSTTITATITF 173 >emb|CAQ18215.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 173 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/141 (48%), Positives = 102/141 (72%), Gaps = 2/141 (1%) Query: 28 AATASASLTISASVVASCTVVGSSIAFGAYN--QAVVNQTGSITVQCTNGTAYNVGLDAG 85 AAT + + T+S ++ A C++ +++ FG A V+QT +++V C+N AYNVG DAG Sbjct: 33 AATKTTTFTVSLTLQADCSIAANTLNFGTQGVLAANVDQTTTVSVTCSNTAAYNVGFDAG 92 Query: 86 TGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQI 145 T TG+TV+ R ++ SG T+ + LY DSAR+ WG+T+GTDT++GTGSG AQ LTVYG++ Sbjct: 93 TTTGSTVAARLLAGSGAATVGFQLYSDSARTQIWGNTVGTDTVSGTGSGTAQVLTVYGRV 152 Query: 146 PAAQTPLAGSYSDTVTVTLTY 166 P+ +P AG+YS T+T T+T+ Sbjct: 153 PSQTSPAAGAYSTTITATITF 173 >ref|YP_003748872.1| hypothetical protein RCFBP_mp30421 [Ralstonia solanacearum CFBP2957] emb|CBJ54504.1| conserved exported protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 143 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/141 (48%), Positives = 102/141 (72%), Gaps = 2/141 (1%) Query: 28 AATASASLTISASVVASCTVVGSSIAFGAYN--QAVVNQTGSITVQCTNGTAYNVGLDAG 85 AAT + + T+S ++ A C++ +++ FG A V+QT +++V C+N AYNVG DAG Sbjct: 3 AATKTTTFTVSLTLQADCSIAANTLNFGTQGVLAANVDQTTTVSVTCSNTAAYNVGFDAG 62 Query: 86 TGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQI 145 T TG+TV+ R ++ SG T+ + LY DSAR+ WG+T+GTDT++GTGSG AQ LTVYG++ Sbjct: 63 TTTGSTVAARLLAGSGAATVGFQLYSDSARTQIWGNTVGTDTVSGTGSGTAQVLTVYGRV 122 Query: 146 PAAQTPLAGSYSDTVTVTLTY 166 P+ +P AG+YS T+T T+T+ Sbjct: 123 PSQTSPAAGAYSTTITATITF 143 >ref|NP_523059.1| signal peptide protein [Ralstonia solanacearum GMI1000] emb|CAD18651.1| probable signal peptide protein [Ralstonia solanacearum GMI1000] Length = 173 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 101/141 (71%), Gaps = 2/141 (1%) Query: 28 AATASASLTISASVVASCTVVGSSIAFGAYN--QAVVNQTGSITVQCTNGTAYNVGLDAG 85 AAT + + T+S ++ A C++ +++ FG A V+QT +++V C+N YNVG DAG Sbjct: 33 AATKTTTFTVSLTLQADCSISANALNFGTQGVLAANVDQTATLSVTCSNTAPYNVGFDAG 92 Query: 86 TGTGATVSNRKMSASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQI 145 T TG+T++ R ++ SG T+ + LY DSAR+ WG+T+GTDT++GTGSG AQ LTVYG++ Sbjct: 93 TTTGSTIAARLLAGSGAATVGFQLYSDSARTQIWGNTVGTDTVSGTGSGTAQVLTVYGRV 152 Query: 146 PAAQTPLAGSYSDTVTVTLTY 166 P+ +P AG+YS T+T T+T+ Sbjct: 153 PSQNSPAAGTYSTTITATITF 173