BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0332.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J... 418 e-115 ref|YP_004752255.1| NADH-ubiquinone oxidoreductase subunit J [Co... 310 7e-83 ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacter... 298 4e-79 ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalo... 291 6e-77 ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimona... 273 9e-72 ref|YP_314909.1| NADH dehydrogenase I subunit J [Thiobacillus de... 255 3e-66 ref|ZP_01915804.1| NADH-ubiquinone/plastoquinone oxidoreductase,... 250 1e-64 ref|YP_981668.1| NADH-ubiquinone/plastoquinone oxidoreductase su... 249 2e-64 ref|YP_550059.1| NADH-ubiquinone/plastoquinone oxidoreductase su... 247 8e-64 ref|YP_001790543.1| NADH-ubiquinone/plastoquinone oxidoreductase... 242 3e-62 >ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J [Herbaspirillum seropedicae SmR1] gb|ADJ63288.1| transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV Sbjct: 7 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD Sbjct: 67 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD Sbjct: 127 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 186 Query: 181 RVRLVSMKAESTRNEPPADAAAAADKPAAGQQS 213 RVRLVSMKAESTRNEPPADAAAAADKPAAGQQS Sbjct: 187 RVRLVSMKAESTRNEPPADAAAAADKPAAGQQS 219 >ref|YP_004752255.1| NADH-ubiquinone oxidoreductase subunit J [Collimonas fungivorans Ter331] gb|AEK61432.1| NADH-ubiquinone oxidoreductase chain J [Collimonas fungivorans Ter331] Length = 223 Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 154/191 (80%), Positives = 173/191 (90%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFY F+V+LVIAA+RVITARNPVHAALFLVLSFFSAAGIWMLLKAEFL+IVLVLVYVGAV Sbjct: 7 LFYAFSVVLVIAALRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLSIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDIN+DK+REGFWGYFPLAAT+G +IVLEMAAV+ F E VPA S Sbjct: 67 MVLFLFVVMMLDINLDKMREGFWGYFPLAATVGTVIVLEMAAVIFHGFQGSEADVPAISA 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 +G TK LGKLI+TEYVYAFEIAAVILLVAIVAAVALTLR+RKD+KYF P+ AVKVK++D Sbjct: 127 NIGNTKELGKLIYTEYVYAFEIAAVILLVAIVAAVALTLRRRKDTKYFSPSAAVKVKSTD 186 Query: 181 RVRLVSMKAES 191 RVR+V MK+E+ Sbjct: 187 RVRIVKMKSEA 197 >ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] gb|ABR88441.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] Length = 213 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 173/206 (83%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVF+ ILV+AA+RVIT NPVHAALFLVLSF SAA +WMLLKAEFL+IVL+LVYVGAV Sbjct: 7 LFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLILVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMM+DI + KLREGFWGY PLAATIGV+IVLEMA VL R FW TQVP S Sbjct: 67 MVLFLFVVMMVDIKLTKLREGFWGYLPLAATIGVVIVLEMALVLFRGFWRSHTQVPEVSA 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 +G K LGKLI+T+Y+YAFEIAAV+LLV ++AAVALT+RKRKDSKYF P AV+VKASD Sbjct: 127 NIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAPGDAVRVKASD 186 Query: 181 RVRLVSMKAESTRNEPPADAAAAADK 206 R+R+V MKA+S R + AA AA++ Sbjct: 187 RLRVVKMKADSARANGDSPAAPAAEQ 212 >ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] gb|EGF31352.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 291 bits (744), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 156/193 (80%), Positives = 179/193 (92%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFY F+ ILV+AA++VIT RNPVH+ALFLVLSFFSAA IW+LL+AEFLAIVLVLVYVGAV Sbjct: 7 LFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDIN+DK+REGFWGY P AA IGV+IVLEM+AVLL++FW P+ QVP+A+ Sbjct: 67 MVLFLFVVMMLDINVDKMREGFWGYLPFAAFIGVLIVLEMSAVLLQAFWAPDAQVPSAAS 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 T+G TK LGKLI+TEYV+AFEIAA ILL+AIVAAVALTLRKRKDSKYFDPA+AVKVKASD Sbjct: 127 TIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFDPAEAVKVKASD 186 Query: 181 RVRLVSMKAESTR 193 RVR+V MK+ESTR Sbjct: 187 RVRIVKMKSESTR 199 >ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimonas arsenicoxydans] emb|CAL61972.1| NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit J) (NDH-1 subunit J) [Herminiimonas arsenicoxydans] Length = 213 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 173/206 (83%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVF+ ILV AA+RVIT NPVHAALFLVLSF +AA +WMLLKAEFL+IVLVLVYVGAV Sbjct: 7 LFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMM+DI + +REGFWGY PLAATIGV+IVLEMAAVL R FW T VP A+ Sbjct: 67 MVLFLFVVMMVDIKLSNVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWKAHTHVPEAAA 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 +G TK LGKLI+T+Y+YAFE+AA++LL+A+VAAVALT+RKRKD+KYF P AVKVK+ D Sbjct: 127 MIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAPGDAVKVKSGD 186 Query: 181 RVRLVSMKAESTRNEPPADAAAAADK 206 R+R+V MKAESTR AA AA++ Sbjct: 187 RLRVVKMKAESTRANGDQSAAPAAEQ 212 >ref|YP_314909.1| NADH dehydrogenase I subunit J [Thiobacillus denitrificans ATCC 25259] gb|AAZ97104.1| NADH dehydrogenase I chain J [Thiobacillus denitrificans ATCC 25259] Length = 211 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/193 (67%), Positives = 158/193 (81%), Gaps = 2/193 (1%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 +FY FA ILV A +RVITARNPVHAALFLVL+FF+AAG+W+LL+AEFLAI LVLVYVGAV Sbjct: 6 IFYFFAAILVFAGLRVITARNPVHAALFLVLAFFTAAGLWLLLEAEFLAITLVLVYVGAV 65 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVL-LRSFWTPETQVPAAS 119 MVLFLFVVMMLDIN+D+LREGFW Y PLA + +++V+EMA +L R F VP A Sbjct: 66 MVLFLFVVMMLDINLDQLREGFWNYLPLAGVVAILLVIEMALILGGRHFGLDVIGVPPAQ 125 Query: 120 DT-LGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKA 178 TK LG+LI+T+YVYAFE+AAVILLVAIVAA+ALTLR+RKD+KY DPA+ VKVK Sbjct: 126 PADYSNTKELGRLIYTDYVYAFELAAVILLVAIVAAIALTLRRRKDTKYIDPAQQVKVKR 185 Query: 179 SDRVRLVSMKAES 191 +DR+R++ M AE Sbjct: 186 NDRLRIIKMPAEK 198 >ref|ZP_01915804.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter sp. MED105] gb|EDM83049.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Limnobacter sp. MED105] Length = 210 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 129/205 (62%), Positives = 160/205 (78%), Gaps = 6/205 (2%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FYVFA ILV AAVRVITA N VHAAL+LVLSFFSA+ +WMLL+AEFLAI LVLVYVGAVM Sbjct: 8 FYVFAAILVFAAVRVITASNAVHAALYLVLSFFSASALWMLLEAEFLAISLVLVYVGAVM 67 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASDT 121 VLFLFVVMM+D+NMDK+R GFW P+AA +G +I +M+ VLLR FW P + P Sbjct: 68 VLFLFVVMMVDVNMDKVRAGFWKNLPVAAIVGSLIAFQMSVVLLRGFWDPNLETP--EQA 125 Query: 122 LGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASDR 181 T+ LGKL++TEY+Y FE+AA+ILLVA+VAA+ALTLRKRKD+K P+ V+VK++DR Sbjct: 126 ANNTEALGKLLYTEYLYPFEVAALILLVAMVAAIALTLRKRKDTKGQVPSDQVRVKSTDR 185 Query: 182 VRLVSMKAE----STRNEPPADAAA 202 V+LVSM A+ T++E P+ A Sbjct: 186 VKLVSMPADLDRKQTKSETPSGPKA 210 >ref|YP_981668.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas naphthalenivorans CJ2] gb|ABM36747.1| NADH dehydrogenase subunit J [Polaromonas naphthalenivorans CJ2] Length = 215 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/194 (65%), Positives = 156/194 (80%), Gaps = 5/194 (2%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVFA +L+ AA RVITARNPVHAALFLVL+FF AA +W+LLKAEFLAI LVLVYVGAV Sbjct: 7 LFYVFAAVLLFAAFRVITARNPVHAALFLVLAFFQAAAVWILLKAEFLAITLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPET--QVPAA 118 MVLFLFVVMMLDIN+D +R+GFW +FPLA T+G II LEM+ VL+ F P +P + Sbjct: 67 MVLFLFVVMMLDINLDSVRKGFWKHFPLAGTVGAIIALEMSYVLMGGFREPPQGASMPVS 126 Query: 119 SDTLGQ---TKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVK 175 + Q TK LGK+++++Y+Y EIAAVILLVAI+AA+ALTLR+RKDSK +PA V+ Sbjct: 127 GELAAQVSNTKELGKVLYSQYIYPLEIAAVILLVAIIAAIALTLRERKDSKRTNPADQVR 186 Query: 176 VKASDRVRLVSMKA 189 VK+ DRVRLV MK+ Sbjct: 187 VKSQDRVRLVKMKS 200 >ref|YP_550059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 [Polaromonas sp. JS666] gb|ABE45161.1| NADH dehydrogenase subunit J [Polaromonas sp. JS666] Length = 217 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 126/196 (64%), Positives = 155/196 (79%), Gaps = 11/196 (5%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVFA +L+ AA RVITARNPVHAAL+LVL+FF AA +W+LLKAEFLAI LVLVYVGAV Sbjct: 7 LFYVFAAVLLFAAFRVITARNPVHAALYLVLAFFQAAAVWILLKAEFLAITLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDIN+D +R+GFW +FPLA T+G II LEM+ VL+ F P P A+ Sbjct: 67 MVLFLFVVMMLDINIDSVRKGFWKHFPLAGTVGAIIALEMSYVLMGGFREP----PKAAS 122 Query: 121 TLGQ-------TKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKA 173 GQ TK LGKL+++EY+Y E+AAVILLVA++AA+ALTLR+RKD+KY +P+ Sbjct: 123 APGQIGAQVSNTKELGKLLYSEYLYPLEVAAVILLVAMIAAIALTLRQRKDTKYINPSDQ 182 Query: 174 VKVKASDRVRLVSMKA 189 ++VK DRV LV MK+ Sbjct: 183 IRVKRGDRVSLVKMKS 198 >ref|YP_001790543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix cholodnii SP-6] gb|ACB33778.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Leptothrix cholodnii SP-6] Length = 216 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 125/188 (66%), Positives = 157/188 (83%), Gaps = 1/188 (0%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVF+ +L+ AA RVITAR+PVHAAL+LVL+FF+A+ +WMLL+AEFLAI LVLVYVGAV Sbjct: 7 LFYVFSAVLLFAAFRVITARSPVHAALYLVLAFFTASCVWMLLQAEFLAISLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ-VPAAS 119 MVLFLFVVMMLDIN+D LR+GFW +FP+AAT+GVII LEMA VLLR F P + +P A+ Sbjct: 67 MVLFLFVVMMLDINVDVLRQGFWSHFPVAATVGVIIALEMAVVLLRGFNLPIAKAMPGAA 126 Query: 120 DTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKAS 179 + + TK LG ++T+Y+Y EIAAVILLVAI+AA+ALTLR+RKD K +PA+ VK K + Sbjct: 127 EGVPNTKLLGIELYTDYLYPLEIAAVILLVAIIAAIALTLRRRKDVKGQNPAEQVKAKKA 186 Query: 180 DRVRLVSM 187 DR+R+V M Sbjct: 187 DRLRIVKM 194