BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0327.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirill... 335 2e-90 ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas ... 284 4e-75 ref|YP_004752250.1| NADH-ubiquinone oxidoreductase subunit E [Co... 280 6e-74 ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacter... 267 4e-70 ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalo... 265 2e-69 ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkh... 252 1e-65 ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkh... 251 2e-65 ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkh... 250 4e-65 ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertus... 248 2e-64 ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia p... 248 2e-64 >ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1] gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 159/159 (100%), Positives = 159/159 (100%) Query: 5 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 64 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV Sbjct: 1 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 60 Query: 65 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 124 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM Sbjct: 61 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 120 Query: 125 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK Sbjct: 121 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 159 >ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans] emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans] Length = 159 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 129/159 (81%), Positives = 150/159 (94%) Query: 5 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 64 MLLS++A KKIDRE+AK+PADQ+QSAVM+AL IAQ E GWLP E+ QE+ADY+GMPA+AV Sbjct: 1 MLLSEQAYKKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAV 60 Query: 65 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 124 QEVATFYNM++T PVGKHKI+VCTNLPCLLSGGERAAH+LK KLGIDYRETTADGQFTL+ Sbjct: 61 QEVATFYNMYDTKPVGKHKISVCTNLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTLI 120 Query: 125 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 EGECMGACGDAPVM+VNN +MCS+MS++KIDAL+EELKK Sbjct: 121 EGECMGACGDAPVMIVNNKRMCSFMSDDKIDALVEELKK 159 >ref|YP_004752250.1| NADH-ubiquinone oxidoreductase subunit E [Collimonas fungivorans Ter331] gb|AEK61427.1| NADH-ubiquinone oxidoreductase chain E [Collimonas fungivorans Ter331] Length = 167 Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 128/163 (78%), Positives = 146/163 (89%) Query: 1 MANDMLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMP 60 MANDMLLSQ+ KKIDRE+AK+PADQ+QSAVM+AL IAQ E GWL E Q++ADY+GMP Sbjct: 1 MANDMLLSQDTYKKIDREVAKFPADQKQSAVMAALAIAQDEKGWLAPETMQDVADYLGMP 60 Query: 61 AVAVQEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQ 120 A+AVQEVATFYNM+NT PVGKHKI++CTNLPC LSGGERAA HLK KLGID+RETTADG Sbjct: 61 AIAVQEVATFYNMYNTKPVGKHKISICTNLPCQLSGGERAAEHLKHKLGIDFRETTADGL 120 Query: 121 FTLMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 FTL+EGECMGACGDAPV+LVNN +MCSWMSNEKID LL+EL + Sbjct: 121 FTLVEGECMGACGDAPVLLVNNKRMCSWMSNEKIDGLLQELSE 163 >ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille] gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille] Length = 159 Score = 267 bits (683), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 144/159 (90%) Query: 5 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 64 MLLS++ K+IDRE+AK+P DQ+QSAVM+AL+IAQ E WLP E+ Q++ADY+GMPA+AV Sbjct: 1 MLLSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAV 60 Query: 65 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 124 QEVATFYNM+NT PVGK KI+VCTNLPC LSGGE+AAH+LKQKLGIDYRETT D FTL+ Sbjct: 61 QEVATFYNMYNTKPVGKFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTLV 120 Query: 125 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 EGECMGACGDAPVMLVNN +MCS+MS+EKIDAL+EELKK Sbjct: 121 EGECMGACGDAPVMLVNNKRMCSFMSDEKIDALVEELKK 159 >ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium IMCC9480] gb|EGF30335.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium IMCC9480] Length = 159 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 138/159 (86%) Query: 5 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 64 MLLS+ A KKIDRE++K+PADQ+QSAVM AL IAQ E GWL L QEIADY+GM +AV Sbjct: 1 MLLSELAYKKIDREVSKFPADQKQSAVMGALAIAQDEAGWLSPPLMQEIADYLGMAPIAV 60 Query: 65 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 124 QEVA FY M+NTSP GK KITVCTNLPC LSGGE+AA +LKQKLGIDYRETTADGQFTL Sbjct: 61 QEVAAFYEMYNTSPTGKFKITVCTNLPCALSGGEKAARYLKQKLGIDYRETTADGQFTLR 120 Query: 125 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 EGECMGACGDAPVMLVNN +MCSWMSN+KID L+EELKK Sbjct: 121 EGECMGACGDAPVMLVNNKRMCSWMSNDKIDDLVEELKK 159 >ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis C4D1M] gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis C4D1M] Length = 161 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 120/161 (74%), Positives = 136/161 (84%), Gaps = 3/161 (1%) Query: 6 LLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQ 65 ++S E LK+IDR +AKYPADQ+QSAVMSAL AQ EHGWL EL Q +ADY+GMPAVAVQ Sbjct: 1 MISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQ 60 Query: 66 EVATFYNMFNTSPVGKHKITVCTNLPCLL---SGGERAAHHLKQKLGIDYRETTADGQFT 122 EVATFY M+ TSPVGKHKIT+CTNLPC L G + AA +LKQKLGID+ ETTADG+FT Sbjct: 61 EVATFYTMYETSPVGKHKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFT 120 Query: 123 LMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 L EGECMG+CGDAPVMLVNNH+MCS+MS EKID LLEEL K Sbjct: 121 LKEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003] gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003] Length = 161 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/161 (74%), Positives = 136/161 (84%), Gaps = 3/161 (1%) Query: 6 LLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQ 65 ++S E LK+IDR +AKYPADQ+QSAVMSAL AQ EHGWL EL Q +ADY+GMPAVAVQ Sbjct: 1 MISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQ 60 Query: 66 EVATFYNMFNTSPVGKHKITVCTNLPCLL---SGGERAAHHLKQKLGIDYRETTADGQFT 122 EVATFY M+ TSPVGK+KIT+CTNLPC L G E AA +LKQKLGID+ ETTADG+FT Sbjct: 61 EVATFYTMYETSPVGKYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTADGKFT 120 Query: 123 LMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 L EGECMG+CGDAPVMLVNNH+MCS+MS EKID LLEEL K Sbjct: 121 LKEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001] gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001] Length = 161 Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 119/161 (73%), Positives = 136/161 (84%), Gaps = 3/161 (1%) Query: 6 LLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQ 65 ++S E LK+IDR +AKYPADQ+QSAVMSAL AQ EHGWL EL Q +ADY+GMPAVAVQ Sbjct: 1 MISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQ 60 Query: 66 EVATFYNMFNTSPVGKHKITVCTNLPCLL---SGGERAAHHLKQKLGIDYRETTADGQFT 122 EVATFY M+ TSPVGK+KIT+CTNLPC L G + AA +LKQKLGID+ ETTADG+FT Sbjct: 61 EVATFYTMYETSPVGKYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFT 120 Query: 123 LMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 L EGECMG+CGDAPVMLVNNH+MCS+MS EKID LLEEL K Sbjct: 121 LKEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I] ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50] emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella pertussis Tohama I] emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella bronchiseptica RB50] gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS] Length = 164 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 110/158 (69%), Positives = 138/158 (87%) Query: 5 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 64 MLLS++A KKIDRELAK+PADQRQSA+M++L IAQ E GWLPAE+ +++A+YIG+P +AV Sbjct: 1 MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAV 60 Query: 65 QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLM 124 QEVATFYNMF+ PVG HKI VCTNLPC L GE+AA +LK+KLG+D+RETTADG+FTL+ Sbjct: 61 QEVATFYNMFDVKPVGTHKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLI 120 Query: 125 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELK 162 EGECMGACGD+PV++VNN MC M+ EK+DAL++ LK Sbjct: 121 EGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLK 158 >ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN] gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans PsJN] Length = 161 Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 118/161 (73%), Positives = 135/161 (83%), Gaps = 3/161 (1%) Query: 6 LLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQ 65 ++S E LK+IDR +AKYPADQ+QSAVMSAL AQ EHGWL EL Q +ADY+GMPAVAVQ Sbjct: 1 MISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQ 60 Query: 66 EVATFYNMFNTSPVGKHKITVCTNLPCLL---SGGERAAHHLKQKLGIDYRETTADGQFT 122 EVATFY M+ TSPVGK+KIT+CTNLPC L G + AA +LKQKLGID+ ETTADG+FT Sbjct: 61 EVATFYTMYETSPVGKYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFT 120 Query: 123 LMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163 L EGECMG+CGDAPVMLVNNH+MCS+MS KID LLEEL K Sbjct: 121 LKEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEELSK 161