BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0326.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirill... 863 0.0 ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas ... 806 0.0 ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacter... 803 0.0 ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalo... 802 0.0 ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Co... 800 0.0 ref|NP_520180.1| NADH dehydrogenase subunit D [Ralstonia solanac... 780 0.0 ref|YP_002981841.1| NADH dehydrogenase subunit D [Ralstonia pick... 780 0.0 ref|YP_002005069.1| NADH dehydrogenase subunit d [Cupriavidus ta... 779 0.0 ref|YP_001899777.1| NADH dehydrogenase subunit D [Ralstonia pick... 779 0.0 ref|YP_295187.1| NADH dehydrogenase subunit D [Ralstonia eutroph... 779 0.0 >ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirillum seropedicae SmR1] gb|ADJ63282.1| NADH dehydrogenase I (Chain D) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/417 (99%), Positives = 417/417 (100%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMMSNEHGYVLAIERMLGI+VPLRAQYIRVMFDEITRLLNHLMWIGAHALD Sbjct: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIDVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA Sbjct: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF Sbjct: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV Sbjct: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE Sbjct: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas arsenicoxydans] sp|A4G641.1|NUOD_HERAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D emb|CAL61978.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase subunit D) [Herminiimonas arsenicoxydans] Length = 417 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/417 (91%), Positives = 398/417 (95%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV++IE+ML +EVPLRAQYIRVMFDEITR+LNHLMW+GAHALD Sbjct: 61 PYMDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGV LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD+MPQ+KASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I +LNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERA+ MGF Sbjct: 181 INKLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +GPMLRGSGI WDLRKKQPYEVYDLLDFDIPVG NGDCYDRYLVRV EMRQSNRIIKQCV Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNNPG V+TDNHK+APP R DMKSNMEDLIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FGVYL+SDGANKPYR+KIRAPGF HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacterium sp. Marseille] sp|A6SY08.1|NUOD_JANMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|ABR88407.1| NADH dehydrogenase I chain D [Janthinobacterium sp. Marseille] Length = 417 Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/417 (90%), Positives = 396/417 (94%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV+AIE+ML IEVPLRAQYIRVMFDEITR+LNHLMW+GAHALD Sbjct: 61 PYMDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGV LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD+MPQ+KASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I +LNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVG+GVVSPERA+ MGF Sbjct: 181 ISQLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +G MLRGSG+ WDLRKKQPYEVYDL+DFDIPVG NGDCYDRYLVRV EMRQSNRIIKQCV Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNN GPV+TDNHK+APP R MKSNMEDLIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FGVYL+SDGANKPYR+KIRAPGF HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium IMCC9480] gb|EGF30334.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium IMCC9480] Length = 417 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/417 (90%), Positives = 399/417 (95%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEHGYV++IE++LG+EVPLRAQYIRVMFDEITRLLNHL+W+GAHALD Sbjct: 61 PYMDRLDYVSMMCNEHGYVMSIEKLLGLEVPLRAQYIRVMFDEITRLLNHLLWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGV LYAFREREDL DCYEAVSGAR+HAAYYRPGGVYRDLP+ MP+Y ASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPEVMPKYSASILRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I +LNENRQGSLLDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVGVGVVSPERAL MGF Sbjct: 181 IGQLNENRQGSLLDFIEDFTNRFPRYVDEYETLLTDNRIWKQRLVGVGVVSPERALAMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +GPMLRGSGI WDLRKKQPYEVYDLLDFDIPVG NGDCYDRYLVRV EMRQSN+IIKQCV Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGVNGDCYDRYLVRVEEMRQSNKIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNNPGPV+TDNHK+APP R +MKSNME+LIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNPGPVMTDNHKVAPPSRVNMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FGVYL+SDGANKPYRLKIRAPGFAHLQ LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRLKIRAPGFAHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Collimonas fungivorans Ter331] gb|AEK61426.1| NADH-ubiquinone oxidoreductase chain D [Collimonas fungivorans Ter331] Length = 417 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/417 (91%), Positives = 395/417 (94%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEHGYV+AIER+LG+EVPLRAQYIRVMFDEITRLLNHLMWIGAHALD Sbjct: 61 PYMDRLDYVSMMCNEHGYVMAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM VLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD+MPQ+KAS+VRN KA Sbjct: 121 VGAMAVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASLVRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I LNENRQGSLLDFIEDFT RFP YVDEYETLLTDNRIWKQRLVG+GVVSPERA MGF Sbjct: 181 ISALNENRQGSLLDFIEDFTVRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERAKAMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +G MLRGSG+ WDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRV EMRQSNRIIKQCV Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNN GPV+T NHK+AP R DMKSNME+LIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNSGPVMTTNHKVAPSSRIDMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FGVY+VSDGANKPYRLKIRAPGF HLQ LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYIVSDGANKPYRLKIRAPGFPHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|NP_520180.1| NADH dehydrogenase subunit D [Ralstonia solanacearum GMI1000] emb|CAD15766.1| probable nadh dehydrogenaseI(chain d) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 417 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/417 (87%), Positives = 393/417 (94%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MA+IKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT++Q+V Sbjct: 1 MADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV+AIER+LGI+VPLRAQYIRVMFDEITR++NHLMWIGAHALD Sbjct: 61 PYMDRLDYVSMMVNEHAYVMAIERLLGIDVPLRAQYIRVMFDEITRIMNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM V LYAFREREDLFD YEAVSGARMHAAYYRPGGVYRDLPDSMPQYKAS VRNEKA Sbjct: 121 VGAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 + +NE R GSLLDFIE FT+RFPTYVDEYETLLTDNRIWKQRLVG+GVV+PERALQ G Sbjct: 181 LAAMNETRSGSLLDFIEAFTDRFPTYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGM 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +GPMLRGSGIAWD+RKKQPYEVYD +DFDIPVG NGDCYDRYLVRV EMRQSNRI++QCV Sbjct: 241 TGPMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLR NPGPVITDNHK+APP R +MK+NME+LIHHFKLFTEG VP GEAYAAVEHPKGE Sbjct: 301 EWLRKNPGPVITDNHKVAPPSRVEMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y++SDGANKPYRLKIRAPGFAHL AL+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGIYVISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_002981841.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12D] ref|ZP_07676588.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA] gb|ACS63169.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12D] gb|EFP65160.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA] Length = 417 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/417 (88%), Positives = 389/417 (93%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MA+IKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT++QSV Sbjct: 1 MADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV+AIER+LG+EVPLRAQYIRVMFDEITR++NHLMWIG+HALD Sbjct: 61 PYMDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM V LYAFREREDLFD YEAVSGARMHAAYYRPGGVYRDLPD+MPQYKAS VRNEKA Sbjct: 121 VGAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 + LNE R GSLLDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVG+GVVSPERAL GF Sbjct: 181 LAALNETRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 SG MLRGSGI WD+RKKQPYEVYD +DFDIPVG NGDCYDRYLVRV EMRQSNRII+QC+ Sbjct: 241 SGAMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCI 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLR NPGPVITDNHK+APP R DMK+NME+LIHHFKLFTEG VP GEAYAAVEHPKGE Sbjct: 301 EWLRKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y +SDGANKPYRLKIRAPGF HL AL+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGIYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_002005069.1| NADH dehydrogenase subunit d [Cupriavidus taiwanensis LMG 19424] sp|B3R3X0.1|NUOD_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D emb|CAQ69002.1| NADH:ubiquinone oxidoreductase complex I, chain D [Cupriavidus taiwanensis LMG 19424] Length = 417 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/417 (88%), Positives = 391/417 (93%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MA+IKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT++QSV Sbjct: 1 MADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV+AIER+LG+EVP+RAQYIRVMFDEITRLLNHLMWIG+HALD Sbjct: 61 PYMDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM V LYAFRERED+FD YEAVSGARMHAAYYRPGGVYRDLPD+MPQY+AS V NE+A Sbjct: 121 VGAMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I+ +NE R GSLLDFIEDFTNRFP YVDEYETLLTDNRIWKQRLV +GVVSPERALQMGF Sbjct: 181 IKAMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +GPMLRGSGIAWDLRKKQPYEVYD LDFD+PVG GDCY RYLVRV EMRQSNRIIKQCV Sbjct: 241 TGPMLRGSGIAWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 +WLR NPGPVIT+NHK+APP R DMKSNME+LIHHFKLFTEG VP GEAYAAVEHPKGE Sbjct: 301 DWLRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPEGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y +SDGANKPYRLKIRAPGFAHL AL+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGIYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001899777.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12J] sp|B2U7Q8.1|NUOD_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|ACD27345.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12J] Length = 417 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/417 (87%), Positives = 389/417 (93%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MA+IKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT++QSV Sbjct: 1 MADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV+AIER+LG+EVPLRAQYIRVMFDEITR++NHLMWIG+HALD Sbjct: 61 PYMDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM V LYAFREREDLFD YEAVSGARMHAAYYRPGGVYRDLPD+MPQYKAS VRNEKA Sbjct: 121 VGAMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 + LN+ R GSLLDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVG+GVVSPERAL GF Sbjct: 181 LAALNQTRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 SG MLRGSGI WD+RKKQPYEVYD +DFDIPVG NGDCYDRYLVRV EMRQSNRII+QC+ Sbjct: 241 SGAMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCI 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLR NPGPVITDNHK+APP R DMK+NME+LIHHFKLFTEG VP GEAYAAVEHPKGE Sbjct: 301 EWLRKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y +SDGANKPYRLKIRAPGF HL AL+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGIYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_295187.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134] sp|Q473U0.1|NUOD_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|AAZ60343.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134] Length = 417 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/417 (88%), Positives = 391/417 (93%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MA+IKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQK+++Q+V Sbjct: 1 MADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKSWIQNV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMMSNEH YV+AIER+LGIEVP+RAQYIRVMFDEITRLLNHLMWIGAHALD Sbjct: 61 PYMDRLDYVSMMSNEHAYVMAIERLLGIEVPIRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM V LYAFRERED+FD YEAVSGARMHAAYYRPGGVYRDLPD+MPQY+AS V NE+A Sbjct: 121 VGAMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I+ +NE R GSLLDFIEDFTNRFP YVDEYETLLTDNRIWKQRLV +GVVSPERALQMGF Sbjct: 181 IKVMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGF 240 Query: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +GPMLRGSGIAWDLRKKQPYEVYD +DFD+PVG GDCY RYLVRV EMRQSNRIIKQC+ Sbjct: 241 TGPMLRGSGIAWDLRKKQPYEVYDKMDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCI 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLR NPGPVITDNHK+APP R DMKSNME+LIHHFKLFTEG VP GEAYAAVEHPKGE Sbjct: 301 EWLRRNPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGE 360 Query: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y +SDGANKPYRLKIRAPGF HL AL+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGIYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417