BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0288.p         (385 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777193.1| sigma54-dependent transcription regulator pr...   775   0.0  
ref|YP_003911150.1| sigma54 specific transcriptional regulator, ...   347   3e-93
ref|ZP_03697401.1| sigma54 specific transcriptional regulator, F...   322   8e-86
ref|YP_001020809.1| acetoin catabolism regulatory protein [Methy...   319   5e-85
ref|YP_004847680.1| Fis family sigma54 specific transcriptional ...   316   4e-84
ref|YP_935377.1| sigma-54-dependent transcriptional regulator [A...   304   1e-80
ref|ZP_08504938.1| Acetoin catabolism regulatory protein [Methyl...   304   2e-80
ref|ZP_03588116.1| acetoin catabolism regulatory protein [Burkho...   301   1e-79
ref|YP_001579616.1| Fis family GAF modulated sigma54 specific tr...   299   5e-79
ref|ZP_08503456.1| GAF modulated sigma54 specific transcriptiona...   298   7e-79

>ref|YP_003777193.1| sigma54-dependent transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65285.1| sigma54-dependent transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 437

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/385 (99%), Positives = 383/385 (99%)

Query: 1   MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLI 60
           MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDL+ERGKRLI
Sbjct: 53  MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLIERGKRLI 112

Query: 61  DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 120
           DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS
Sbjct: 113 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 172

Query: 121 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 180
           GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI
Sbjct: 173 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 232

Query: 181 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMITEELGRSADDSV 240
           CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMITEELGR ADDSV
Sbjct: 233 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMITEELGRPADDSV 292

Query: 241 IEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIEVRDLPEELMQFQPATLAEVHPI 300
           IEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIEVRDLPEELMQFQPATLAEVHPI
Sbjct: 293 IEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIEVRDLPEELMQFQPATLAEVHPI 352

Query: 301 TRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLY 360
           TRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLY
Sbjct: 353 TRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLY 412

Query: 361 RKLRQLDIPHVRDQAMPAYPTYAVA 385
           RKLRQLDIPHVRDQAMPAYP YAVA
Sbjct: 413 RKLRQLDIPHVRDQAMPAYPAYAVA 437


>ref|YP_003911150.1| sigma54 specific transcriptional regulator, Fis family
           [Burkholderia sp. CCGE1003]
 gb|ADN61859.1| sigma54 specific transcriptional regulator, Fis family
           [Burkholderia sp. CCGE1003]
          Length = 390

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/358 (52%), Positives = 238/358 (66%), Gaps = 23/358 (6%)

Query: 39  IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98
           + +L   DA M  ++ R + LIDR +P+LILGETGTGKEYL+RALHDYS+RR AS ++VN
Sbjct: 22  LGRLCGNDATMLAVLSRARLLIDRQLPILILGETGTGKEYLARALHDYSSRRHASMVSVN 81

Query: 99  CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158
           C SIPE+L ESELFGY +GAFSGAL  GMKGKV  A  GTLFLDEIGDMP A QTRLLR 
Sbjct: 82  CGSIPENLIESELFGYTRGAFSGALSSGMKGKVVLAHRGTLFLDEIGDMPAAQQTRLLRA 141

Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218
           LSEREV P+G+  P+ VD+QLICATHQ++++ +  G FREDLYYR+A G++ LP +RER 
Sbjct: 142 LSEREVTPIGSAEPIAVDLQLICATHQNIESRVEAGTFREDLYYRIAVGIIHLPPVRERH 201

Query: 219 DRRRLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIE 278
           DR  L+  ++  E      +  +++ A + LL   WPGNLRQM A I+Y+CAV +G  I 
Sbjct: 202 DRAWLLQSILEREAPGFTLEGNVDSEAREMLLHCNWPGNLRQMRAAIQYACAVKSGELIR 261

Query: 279 VRDLPEEL-------MQFQP-----ATLAEVHPITRTAQIRPFTSRAEGEAGRERSS-GD 325
             DLP  +       ++ +P     ATL    P   T+   P  + A       R + G 
Sbjct: 262 ACDLPANVQPGKGLGVRREPRASFHATLQAAPPAYATSDDLPHAAAANDMPYAARGARGA 321

Query: 326 PYRD----------ERTRVIDALNGSRWNISAASRQLGMCRASLYRKLRQLDIPHVRD 373
           P+ D          ER  ++ AL+ SRWNISAASR+LG+CRASLYRKLRQ  IPHVRD
Sbjct: 322 PHADIARLPVAAPSERDNILRALSASRWNISAASRELGICRASLYRKLRQFRIPHVRD 379


>ref|ZP_03697401.1| sigma54 specific transcriptional regulator, Fis family [Lutiella
           nitroferrum 2002]
 gb|EEG09887.1| sigma54 specific transcriptional regulator, Fis family [Lutiella
           nitroferrum 2002]
          Length = 660

 Score =  322 bits (824), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 169/349 (48%), Positives = 233/349 (66%), Gaps = 16/349 (4%)

Query: 20  RTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYL 79
           R + +A +  S   P    +D+LA  D  M  ++E+ KRL+++G+ +LI GETGTGKE  
Sbjct: 322 RPAVSATARESVPLPACPALDRLAGDDRQMQRILEQSKRLVNKGVNILIHGETGTGKEVF 381

Query: 80  SRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTL 139
           ++ALH+ S R    +IAVNCA+IP+SL ESELFGY  G F+GA   GMKG +QQ+D GTL
Sbjct: 382 AKALHESSERAARPFIAVNCAAIPDSLIESELFGYAPGTFTGARSKGMKGLIQQSDRGTL 441

Query: 140 FLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFRED 199
           FLDEIGDMPL LQTRLLRVLSEREV+PLGA  PV V++ +I A+H+DL+ LIA G+FRED
Sbjct: 442 FLDEIGDMPLHLQTRLLRVLSEREVLPLGADKPVRVELTVIAASHRDLRKLIAGGQFRED 501

Query: 200 LYYRVAGGVLRLPALRERSDRRRLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLR 259
           LYYR+ G  L LP LRER D+R L+ ++  EE  +S    V+  AAL  L+ YPWPGN+R
Sbjct: 502 LYYRLCGATLFLPPLRERQDKRYLIERLFAEEAAQSGQSPVLAEAALACLMDYPWPGNVR 561

Query: 260 QMHAVIRYSCAVMNGGRIEVRDLPEELMQFQPATLAEVHPITRTAQIRPFTSRAEGEAGR 319
           Q+  V+R++ A+ +GG +E+ DLP ELM+ +P     + P        P   R E     
Sbjct: 562 QLRNVLRFALALSDGGSVELGDLPHELMEGRPPLEETLTP--------PKAEREE----- 608

Query: 320 ERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLYRKLRQLDI 368
              S     DE   ++ AL  ++WN++AA+ +LG+CRA++YR +++  I
Sbjct: 609 ---SLPAALDEAGLLLAALRRNKWNVTAAAAELGICRATVYRHMKKFSI 654


>ref|YP_001020809.1| acetoin catabolism regulatory protein [Methylibium petroleiphilum
           PM1]
 gb|ABM94574.1| acetoin catabolism regulatory protein [Methylibium petroleiphilum
           PM1]
          Length = 666

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 169/355 (47%), Positives = 233/355 (65%), Gaps = 19/355 (5%)

Query: 15  ADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGT 74
           AD  V  ST ARSA S     +  +D+LA GD  M  L+ + KRL+DR + +LI GETG+
Sbjct: 324 ADRPVAVSTVARSADS-----FPALDRLAGGDPAMDRLLVQAKRLVDRKVNILIHGETGS 378

Query: 75  GKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQA 134
           GKE  ++ALH+ S+R R  +IAVNCASIPESL ESELFGY  G+F+G    GMKG + QA
Sbjct: 379 GKEVFAKALHESSSRARMPFIAVNCASIPESLIESELFGYTPGSFTGGKSKGMKGLILQA 438

Query: 135 DGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEG 194
            GGTLFLDEIGDMPL LQTR LRVLSE EV+PLGA  P+PVD  +I ATH+DL+  +A G
Sbjct: 439 HGGTLFLDEIGDMPLHLQTRFLRVLSESEVLPLGAERPIPVDFTVIAATHRDLRDRVAAG 498

Query: 195 RFREDLYYRVAGGVLRLPALRERSDRRRLVMQMITEELGRSADDSVIEAAALQRLLAYPW 254
            FREDLYYR+ G  + LPALRER+D+R L+  +  +E     + + I A A++ LL Y W
Sbjct: 499 TFREDLYYRLCGATMSLPALRERADKRYLIESVFNDEAKGLTEHAGISAEAMELLLTYSW 558

Query: 255 PGNLRQMHAVIRYSCAVMNGGRIEVRDLPEELMQFQPATLAEVHPITRTAQIRPFTSRAE 314
           PGN+R++  V+R++ A+   G + V DLP+E+             + R    RP   +A 
Sbjct: 559 PGNIRELRNVLRFALAISGDGPVTVDDLPQEI------------GMQRLGHGRPLQLQAR 606

Query: 315 -GEAGRERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLYRKLRQLDI 368
            G+ G   ++G    D   R++++L  ++WNI+ AS+ L +CRA++YR++++  I
Sbjct: 607 LGDEGIAMAAGVDDIDAE-RLLNSLKRNKWNITLASQDLKVCRATVYRQMKRFKI 660


>ref|YP_004847680.1| Fis family sigma54 specific transcriptional regulator
           [Pseudogulbenkiania sp. NH8B]
 dbj|BAK77266.1| sigma54 specific transcriptional regulator, Fis family
           [Pseudogulbenkiania sp. NH8B]
          Length = 660

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 164/331 (49%), Positives = 226/331 (68%), Gaps = 18/331 (5%)

Query: 39  IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98
           +D+LA  D  M  ++++ KRL+++G+ +LI GETGTGKE  ++ALH+ S R    +IAVN
Sbjct: 341 LDRLAGDDRQMQRILDQSKRLVNKGVNILIHGETGTGKEVFAKALHESSERAARPFIAVN 400

Query: 99  CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158
           CA+IP+SL ESELFGY  G F+GA   GMKG +QQ+D GTLFLDEIGDMPL LQTRLLRV
Sbjct: 401 CAAIPDSLIESELFGYAPGTFTGARSKGMKGLIQQSDRGTLFLDEIGDMPLHLQTRLLRV 460

Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218
           LSEREV+PLGA  PV V++ +I A+H+DL+ LIA G+FREDLYYR+ G  L LP LRER 
Sbjct: 461 LSEREVLPLGADKPVRVELTVIAASHRDLRKLIAGGQFREDLYYRLCGATLFLPPLRERQ 520

Query: 219 DRRRLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIE 278
           D+R L+ ++  EE  +S    V+  AAL  L+ YPWPGN+RQ+  V+R++ A+ +G  +E
Sbjct: 521 DKRYLIERLFAEEAAQSGQSPVLAEAALACLMDYPWPGNVRQLRNVLRFALALSDGVSVE 580

Query: 279 VRDLPEELMQFQPATLAEVHPITRTAQIRPFTSRAEG-EAGRERSSGDPYRDERTRVIDA 337
           + DLP ELM+ +P     + P        P   R E   AG          DE   ++ A
Sbjct: 581 LGDLPHELMEGRPPLEEALTP--------PKAEREESLPAG---------LDEAGLLLAA 623

Query: 338 LNGSRWNISAASRQLGMCRASLYRKLRQLDI 368
           L  ++WN++AA+ +LG+CRA++YR +++  I
Sbjct: 624 LRRNKWNVTAAAAELGICRATVYRHMKKFSI 654


>ref|YP_935377.1| sigma-54-dependent transcriptional regulator [Azoarcus sp. BH72]
 emb|CAL96491.1| Sigma-54-dependent transcriptional regulator [Azoarcus sp. BH72]
          Length = 655

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/335 (48%), Positives = 223/335 (66%), Gaps = 11/335 (3%)

Query: 39  IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98
           +++LA  D  M  L+ +  RL++R + +L+ GETGTGKE L++ALH+ S+R    ++AVN
Sbjct: 329 LERLAGNDPQMQRLIAQASRLVNRPVNILVHGETGTGKEVLAKALHESSSRATKPFVAVN 388

Query: 99  CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158
           CA+IPESL ESELFGY  G F+G    GM+G +QQADGGTLFLDEIGDMPL LQTRLLRV
Sbjct: 389 CAAIPESLIESELFGYTAGTFTGGRSKGMRGLIQQADGGTLFLDEIGDMPLHLQTRLLRV 448

Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218
           L+EREV+PLGA  PVPV++ ++ A+H+DL+ LIAEG FREDLYYR+ G +L LP LRER 
Sbjct: 449 LAEREVLPLGAEKPVPVNLTVVAASHRDLRKLIAEGSFREDLYYRLCGAILYLPPLRERR 508

Query: 219 DRRRLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIE 278
           DR  L+ +++  E       + ++ AA   LL Y WPGN+RQ+  V+R++ AV +G  I 
Sbjct: 509 DRDYLIDRLLAAEGAELGTSAALDPAARGLLLGYDWPGNVRQLRNVLRFALAVCDGEHIL 568

Query: 279 VRDLPEELMQFQPATLAEVHPITRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDAL 338
            +DLP ELM   P         +RT  I   T+     A       DP R E   +  AL
Sbjct: 569 PQDLPAELMASAP------QAPSRTPAIATATAAVTAPAAVTTPGADPVRGE---LEAAL 619

Query: 339 NGSRWNISAASRQLGMCRASLYRKLRQLDI--PHV 371
               WNI+AA+ +LG+CRA++YR++++  I  PH+
Sbjct: 620 RRHHWNITAAAAELGVCRATIYRQMKRHGIVPPHL 654


>ref|ZP_08504938.1| Acetoin catabolism regulatory protein [Methyloversatilis
           universalis FAM5]
 gb|EGK71763.1| Acetoin catabolism regulatory protein [Methyloversatilis
           universalis FAM5]
          Length = 692

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/341 (46%), Positives = 216/341 (63%), Gaps = 9/341 (2%)

Query: 37  RDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIA 96
           R    LA GD  +   V+   ++ +R IPV++LGETGTGKE  +RA+HDYS R +  ++A
Sbjct: 336 RGFRHLALGDPRVKSNVQCAVKVANRDIPVMLLGETGTGKEAFARAIHDYSERAKQPFVA 395

Query: 97  VNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLL 156
           +NCA+IPESL ESELFGY  GAF+GA   G KGK+ Q+DGGTLFLDEIGDMPL+LQ+RLL
Sbjct: 396 LNCAAIPESLIESELFGYRDGAFTGARSKGAKGKILQSDGGTLFLDEIGDMPLSLQSRLL 455

Query: 157 RVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRE 216
           RVL+E EV+PLGA  P PV++ +ICATHQDL  L+ +GRFREDL+YR+ G    LP LR 
Sbjct: 456 RVLAEGEVVPLGAEQPTPVNLHVICATHQDLPELVRQGRFREDLFYRLNGASFMLPPLRN 515

Query: 217 RSDRRRLVMQMITEELGRSADDSV-IEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGG 275
           R D+R L+  ++ EE      + + I    + RLLAY WPGN+RQ+   IRY+CA+ +G 
Sbjct: 516 REDKRELIQLVMREECAAMGREELRIAEDTMNRLLAYDWPGNIRQLRHAIRYACAIADGN 575

Query: 276 RIEVRDLPEELMQFQPATLAEVHPITRTAQIRPFTSRAEGEAGR----ERSSGDPYRDE- 330
           ++ +   P+EL     +    +    +        S     A      E   G+P  +  
Sbjct: 576 QVAIEHFPQELRGSAASQARALPQPAQQQPPAAAPSLPRSVAAAPDPCELRDGEPLNEAC 635

Query: 331 ---RTRVIDALNGSRWNISAASRQLGMCRASLYRKLRQLDI 368
              R +++DAL  + W ++  +RQLGM RA+ YRK+ +L I
Sbjct: 636 LQLRQKMLDALRRNHWRVTETARQLGMSRATFYRKMARLRI 676


>ref|ZP_03588116.1| acetoin catabolism regulatory protein [Burkholderia multivorans
           CGD1]
 gb|EED97564.1| acetoin catabolism regulatory protein [Burkholderia multivorans
           CGD1]
          Length = 638

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/331 (47%), Positives = 209/331 (63%), Gaps = 30/331 (9%)

Query: 42  LAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCAS 101
           L + DA +    E   R+  + +P+L+LGETG GKE  +RA+HD  ARR   ++AVNC +
Sbjct: 334 LHSSDARVAQQAELALRVASKRLPILVLGETGAGKEVFARAIHDAGARRTRPFVAVNCGA 393

Query: 102 IPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSE 161
           +PE+L ESELFGY  GAF+GA   G +GK+ QADGGTLFLDEIGDMPLALQTRLLRVL++
Sbjct: 394 LPEALIESELFGYAAGAFTGARKHGARGKIAQADGGTLFLDEIGDMPLALQTRLLRVLAD 453

Query: 162 REVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRR 221
            EV+PLG+  PV VD+ +ICATH+DL  ++A G FREDLYYR++G    LP LRER+D R
Sbjct: 454 GEVVPLGSDTPVRVDLDVICATHRDLAQMVAAGTFREDLYYRLSGATFELPPLRERADVR 513

Query: 222 RLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIEVRD 281
            L+  +  EE   +     ++    ++L AYPWPGN+RQ+  V+RY+CAV +G R+  RD
Sbjct: 514 DLITAVFAEEAQATGHVLTLDTTLAEQLAAYPWPGNVRQLRNVMRYACAVCDGARVTRRD 573

Query: 282 LPEELMQFQPATLAEVHPITRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGS 341
           LP ++     A  A V P                             DER+R++ AL   
Sbjct: 574 LPADVAAQLGADTASVLP----------------------------DDERSRIVAALTAH 605

Query: 342 RWNISAASRQLGMCRASLYRKLRQLDI--PH 370
           RW   AA++ LGM RA+LYR++ +  I  PH
Sbjct: 606 RWRPDAAAQALGMSRATLYRRIAKYRIVAPH 636


>ref|YP_001579616.1| Fis family GAF modulated sigma54 specific transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 ref|YP_001946268.1| sigma-54-dependent DNA-binding transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gb|ABX15119.1| GAF modulated sigma54 specific transcriptional regulator, Fis
           family [Burkholderia multivorans ATCC 17616]
 dbj|BAG43732.1| sigma54-dependent DNA-binding transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 638

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/331 (46%), Positives = 208/331 (62%), Gaps = 30/331 (9%)

Query: 42  LAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCAS 101
           L + DA +    E   R+  + +P+L+LGETG GKE  +RA+HD  ARR   ++AVNC +
Sbjct: 334 LHSSDARVAQQAELALRVASKRLPILVLGETGAGKEVFARAIHDAGARRTRPFVAVNCGA 393

Query: 102 IPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSE 161
           +PE+L ESELFGY  GAF+GA   G +GK+ QADGGTLFLDEIGDMPLALQTRLLRVL++
Sbjct: 394 LPEALIESELFGYAAGAFTGARKHGARGKIAQADGGTLFLDEIGDMPLALQTRLLRVLAD 453

Query: 162 REVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRR 221
            EV+PLG+  PV VD+ +ICATH+DL  ++A G FREDLYYR++G    LP LRER+D R
Sbjct: 454 GEVVPLGSDTPVRVDLDVICATHRDLAQMVAAGTFREDLYYRLSGATFELPPLRERADVR 513

Query: 222 RLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIEVRD 281
            L+  +  EE   +     ++    ++L AYPWPGN+RQ+  V+RY+CAV +G R+  RD
Sbjct: 514 DLIAAVFAEEAQATGHVLTLDTTLAEQLAAYPWPGNVRQLRNVMRYACAVCDGARVTRRD 573

Query: 282 LPEELMQFQPATLAEVHPITRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGS 341
           LP ++     A    V P                             DER+R++ AL   
Sbjct: 574 LPADVAAQLGADTGSVLP----------------------------DDERSRIVAALTAH 605

Query: 342 RWNISAASRQLGMCRASLYRKLRQLDI--PH 370
           RW   AA++ LGM RA+LYR++ +  I  PH
Sbjct: 606 RWRPDAAAQALGMSRATLYRRIAKYRIVAPH 636


>ref|ZP_08503456.1| GAF modulated sigma54 specific transcriptional regulator, Fis
           family [Methyloversatilis universalis FAM5]
 gb|EGK73279.1| GAF modulated sigma54 specific transcriptional regulator, Fis
           family [Methyloversatilis universalis FAM5]
          Length = 659

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 170/362 (46%), Positives = 225/362 (62%), Gaps = 33/362 (9%)

Query: 20  RTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYL 79
           R  + AR  S   A    ++D    GD  M   V    R++DR IP+LI GETGTGKE  
Sbjct: 308 RAQSGARGDSGSAAQALAELD---LGDLRMAGNVHSAMRILDRDIPLLIAGETGTGKEVF 364

Query: 80  SRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTL 139
           +RA H  S R R  ++A+NCAS+PE+L ESELFGY +GAF+GA   G +GKV QADGGTL
Sbjct: 365 ARAFHASSQRARGPFVAINCASLPEALIESELFGYKQGAFTGANRDGRRGKVLQADGGTL 424

Query: 140 FLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFRED 199
           FLDEIGDMPL LQ RLLRVL ER+V PLG  + VPVD+QL+CATH+DL+ ++ +G FRED
Sbjct: 425 FLDEIGDMPLQLQARLLRVLEERKVTPLGGENAVPVDLQLVCATHRDLRAMVRDGSFRED 484

Query: 200 LYYRVAGGVLRLPALRERSDRRRLVMQMITEELGRSADDSVIEAAALQRLLAYPWPGNLR 259
           LYYR+ G  + LP LRER+DRR L+ + + EE         +  AA+Q L  Y WPGN+R
Sbjct: 485 LYYRLRGMEVTLPPLRERTDRRALIERCLNEEGAGRHPPVRLGQAAMQVLDRYRWPGNIR 544

Query: 260 QMHAVIRYSCAVMNGGRIEVRDLPEELMQF-QP------ATL------AEVHPITRTAQI 306
           Q+  V+R   A+ +GG I +RD+P ELM   +P      ATL      A+V P + T+ +
Sbjct: 545 QLRYVLRTLVAMCDGGEITLRDMPAELMDAPEPMPAPPVATLPAADSHADVPPPSPTSHL 604

Query: 307 RPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLYRKLRQL 366
            P  S                  ER  ++  L   RWNI+  +R+LG+ R ++YRK+++L
Sbjct: 605 NPLQS-----------------AERDALLAELRRHRWNIAGLARELGVSRNTVYRKMKRL 647

Query: 367 DI 368
           DI
Sbjct: 648 DI 649