BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0287.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777194.1| LysR family transcription regulator protein ... 369 e-101 ref|YP_001861067.1| LysR family transcriptional regulator [Burkh... 199 2e-49 ref|YP_003911151.1| LysR family transcriptional regulator [Burkh... 193 1e-47 ref|YP_004675231.1| LysR family transcriptional regulator [Hypho... 182 2e-44 ref|ZP_02881966.1| transcriptional regulator, LysR family [Burkh... 164 5e-39 ref|YP_004231134.1| LysR family transcriptional regulator [Burkh... 162 2e-38 ref|YP_004234532.1| LysR family transcriptional regulator [Acido... 157 6e-37 ref|YP_003910028.1| LysR family transcriptional regulator [Burkh... 154 6e-36 ref|YP_001890782.1| LysR family transcriptional regulator [Burkh... 152 2e-35 ref|NP_926306.1| LysR family transcriptional regulator [Gloeobac... 152 3e-35 >ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65286.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/180 (99%), Positives = 180/180 (100%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA Sbjct: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE Sbjct: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRR 180 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGR+ Sbjct: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQ 180 >ref|YP_001861067.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC74021.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 299 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/177 (51%), Positives = 130/177 (73%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 +ELRHL Y T+ ETLHFGRAAE LHISQPPL+RQIA LE+ELG LFDR+ R ++LTAA Sbjct: 1 MELRHLHYLVTLGETLHFGRAAERLHISQPPLSRQIALLEEELGVGLFDRTSRTVKLTAA 60 Query: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 G+ F +D EI ++ERAKRN S++ G G+L +GFM + A++I P++ R Y+ YPEV Sbjct: 61 GEGFLQDAKEILASVERAKRNAISANLGHRGSLSLGFMFAAAFSIAPAILRAYTTEYPEV 120 Query: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAG 178 + + E VP+LL D+ + ++DVG+MY P + +++ T++ EPL+A LP +H L+G Sbjct: 121 HLHVGEAVPSLLIQDLRESRLDVGLMYPPGEMAGMETLTVFEEPLVAALPLNHPLSG 177 >ref|YP_003911151.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61860.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 301 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 127/178 (71%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 +ELR L YF +AETLHFGRAA LLHISQPPL+RQIA LE ELG LFDR++R+++L+AA Sbjct: 1 MELRQLRYFVALAETLHFGRAAALLHISQPPLSRQIALLEAELGVVLFDRTRRSVRLSAA 60 Query: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 G+ FYRD + +++A+ + ++ G+ G L GFM + AY+I+P +TR Y++A+P V Sbjct: 61 GQRFYRDAKTVMATVDQARGHARAADLGEEGTLMAGFMFAAAYSIVPVLTRAYASAFPRV 120 Query: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGR 179 +++L+E +P L DI K DVGIMY + L++ TI++E L+AVLP HRL R Sbjct: 121 ELKLSESIPTTLVADIRSGKADVGIMYPSDSAVELETRTIFSEQLVAVLPDGHRLTTR 178 >ref|YP_004675231.1| LysR family transcriptional regulator [Hyphomicrobium sp. MC1] emb|CCB64657.1| Transcriptional regulator, LysR family [Hyphomicrobium sp. MC1] Length = 292 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 120/183 (65%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 MI++R + YF T+AETLHFGRAAE LH++QPPL+RQIAALEKELG +L DRS R LT Sbjct: 1 MIDIRQMRYFVTLAETLHFGRAAERLHLTQPPLSRQIAALEKELGVKLIDRSSRHASLTR 60 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AG+ F D+ + A ++A N + G++G+L +GFMM AY +LPS+ R + AAYP+ Sbjct: 61 AGQGFLEDSRAVLAAFDQACNNAKRADRGETGSLSIGFMMHAAYTVLPSLARRFLAAYPD 120 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRR 180 VD++L E VPN L D+ + D GIM+ P L++ I+ E L + H LA R+ Sbjct: 121 VDLKLREVVPNALVEDVLAARYDAGIMFSPGPVHGLETRPIFHEKLCLAVHDSHPLAQRK 180 Query: 181 XYN 183 N Sbjct: 181 TAN 183 >ref|ZP_02881966.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT12211.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 288 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 111/174 (63%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 MI+++ L YF T+AET HFGRAA L++SQPPL+RQ+AALE LG L +RS R++ LTA Sbjct: 1 MIDIKPLRYFVTLAETRHFGRAAARLNLSQPPLSRQLAALEASLGVTLIERSPRSVTLTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AG+ FY D I ++E+A N ++++G++G L +GF M AYN++P R + AAYPE Sbjct: 61 AGERFYADAKAILASVEQAVSNAQAAASGEAGKLAIGFTMCAAYNVVPGYARAFGAAYPE 120 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDH 174 V + L E V N LA + ID IM+ + L + TI EPL L R H Sbjct: 121 VALSLREVVSNDLAAQVVAGHIDAAIMFPHAPGKGLATRTILREPLCVALSRGH 174 >ref|YP_004231134.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX58074.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 288 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 111/174 (63%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 MI+++ L YF T+AET HFGRAA L++SQPPL+RQ+AALE LG L +RS R++ LTA Sbjct: 1 MIDIKPLRYFVTLAETRHFGRAAARLNLSQPPLSRQLAALEASLGVTLIERSPRSVTLTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AG+ FY D I ++ERA N ++++G++G L +GF M AY+++P R + AAYPE Sbjct: 61 AGERFYADAKAILASVERAVSNAQAAASGEAGKLAIGFTMCAAYSVVPGYARAFGAAYPE 120 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDH 174 V + L E V N LA + ID IM+ + L + TI EPL L R H Sbjct: 121 VALNLREVVSNDLAAQVVAGHIDAAIMFPHVPDKGLATRTILREPLCVALSRGH 174 >ref|YP_004234532.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45965.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 291 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 115/180 (63%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 M++LR L YF VA+TLHFGRAA LHISQPPL+RQIAALE+ELG QL +R + LTA Sbjct: 1 MLDLRRLRYFLAVADTLHFGRAAARLHISQPPLSRQIAALEEELGVQLLERDAHGVALTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AG+ D I ++ERA+ N +++ G++G L +GF M AY+++P R ++A +P+ Sbjct: 61 AGRQLQADGRGILASVERAELNARAAAAGEAGRLAIGFTMCAAYSVVPGYARRFAARHPQ 120 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRR 180 V++ L E V N L + + +ID I++ L T+ EPL LPR HRLA RR Sbjct: 121 VELSLREVVSNDLVAQVAEGRIDAAIVFAQPLPPGLSHRTVVREPLCLALPRGHRLAARR 180 >ref|YP_003910028.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN60737.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 292 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/170 (44%), Positives = 109/170 (64%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 +++++ L YF T+AET HFGRAA L++SQPPL+RQ+AALE LG L +RS R++ LTA Sbjct: 5 VLDIKPLRYFVTLAETRHFGRAATRLNLSQPPLSRQLAALEASLGVTLIERSPRSVTLTA 64 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AG+ FY D I ++E+A N ++++G +G L +GF M AY+++P R + AAYPE Sbjct: 65 AGERFYADAKAILASVEQAVSNAQAAASGDAGKLAIGFTMCAAYSVVPGYARAFGAAYPE 124 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVL 170 V + L E V N LA + ID IM+ + + L + TI EPL L Sbjct: 125 VALNLREVVSNDLAAQVVAGHIDAAIMFPHQPDKGLATRTILREPLCVAL 174 >ref|YP_001890782.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD21411.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 288 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 111/174 (63%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 MI+++ L YF T+AET HFGRAA L++SQPPL+RQ+AALE +G L +RS R++ LTA Sbjct: 1 MIDIKPLRYFVTLAETRHFGRAAARLNLSQPPLSRQLAALEASVGVTLVERSPRSVSLTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 AG+ FY D I ++E+A N +++ G +G L +GF M AY+++P R + AAYPE Sbjct: 61 AGERFYADAKAILASVEQAVSNAQAAAQGDAGKLAIGFTMCAAYSVVPGYARAFGAAYPE 120 Query: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDH 174 V + L E V N LA + +ID IM+ + L + TI +EPL L R H Sbjct: 121 VALNLREVVSNDLAAQVLTGQIDAAIMFPNAPDKGLAARTILSEPLCVALSRSH 174 >ref|NP_926306.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC 7421] dbj|BAC91301.1| LysR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 301 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 111/177 (62%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 +ELRHL YF VAE LHF RAAE LH++QPPL++QI ALE ELG QLF+R++R +QLT A Sbjct: 1 MELRHLKYFLAVAEELHFSRAAEKLHMAQPPLSQQIRALETELGVQLFERTRRKVQLTEA 60 Query: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 G+ + + LE+A R+ ++ G+SG L VGF S AY++LP++ R Y + V Sbjct: 61 GRVLLEEGQLVMAQLEQAVRSTQRAARGESGRLAVGFNSSAAYSVLPAILRAYRQRFAAV 120 Query: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAG 178 ++ L E + +++ D +IDVG +Y P + L + +EPL+ + H AG Sbjct: 121 ELVLRELTTDRQLSELRDGRIDVGFLYLPVEDPALRCEVLLSEPLVVAVGEFHPFAG 177