BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0283.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775155.1| RNA polymerase sigma-70 factor, ECF subfamil... 394 e-108 ref|YP_004751915.1| DNA-directed RNA polymerase specialized sigm... 328 3e-88 ref|ZP_08276308.1| DNA-directed RNA polymerase specialized sigma... 315 2e-84 ref|YP_295169.1| RNA polymerase factor sigma-70 [Ralstonia eutro... 305 2e-81 ref|YP_583065.1| RNA polymerase factor sigma-70 [Cupriavidus met... 304 4e-81 ref|YP_001858248.1| RNA polymerase factor sigma-70 [Burkholderia... 304 4e-81 ref|YP_004684815.1| DNA-directed RNA polymerase sigma-24 subunit... 304 5e-81 ref|YP_001353841.1| ECF subfamily RNA polymerase sigma factor [J... 302 2e-80 ref|YP_001894966.1| RNA polymerase factor sigma-70 [Burkholderia... 300 9e-80 ref|ZP_02882854.1| RNA polymerase, sigma-24 subunit, ECF subfami... 300 9e-80 >ref|YP_003775155.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63247.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ Sbjct: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD Sbjct: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA Sbjct: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 Query: 181 LAQALRAKGISL 192 LAQALRAKGISL Sbjct: 181 LAQALRAKGISL 192 >ref|YP_004751915.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Collimonas fungivorans Ter331] gb|AEK61092.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Collimonas fungivorans Ter331] Length = 189 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 156/192 (81%), Positives = 174/192 (90%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE+VERRAFKQAVYAVRKDE+ALDIVQDAMIKLAEKYGDKP ELPMLFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAVYAVRKDESALDIVQDAMIKLAEKYGDKPAAELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRREKVRNTWVSLFSS G N + ED+D+LE+ ES++ S+A ESSA+ Sbjct: 61 RILQNTIHDYFRREKVRNTWVSLFSSMGRNNAN---DEDYDVLETFESDEDSQATESSAN 117 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q LN+ID E+QKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 118 KLEREQILNIIDEEVQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 177 Query: 181 LAQALRAKGISL 192 LA +L+AKGISL Sbjct: 178 LALSLKAKGISL 189 >ref|ZP_08276308.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30220.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 147/192 (76%), Positives = 174/192 (90%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE+VERRAFKQA+YAVRK+E+ALDIVQDAMIKL++ YGDKP ELP+LFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAIYAVRKEESALDIVQDAMIKLSQSYGDKPPAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRREKVRNTWV+LFSS GN G+ G++F+LL+ ++D ++A+ES AD Sbjct: 61 RILQNTIHDYFRREKVRNTWVTLFSSMTGN---GDAGDEFELLDHYNADDNAQASESGAD 117 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K++R+QTL+ ID E+QKLP RQREAFLMRYWQD+DVAETAAAMGCSEGSVKTHCSRATH Sbjct: 118 KLQREQTLSAIDHEVQKLPARQREAFLMRYWQDLDVAETAAAMGCSEGSVKTHCSRATHT 177 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 178 LAQALKAKGITL 189 >ref|YP_295169.1| RNA polymerase factor sigma-70 [Ralstonia eutropha JMP134] gb|AAZ60325.1| Sigma-70 region 2:Sigma-70 region 4 [Ralstonia eutropha JMP134] Length = 188 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/192 (78%), Positives = 167/192 (86%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATD+ELSDFL SVERRAFKQAV+AVR DEAALDIVQDAMIKLAEKYGDK ELP LFQ Sbjct: 1 MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR+KVRNTW+SLFSS D G+D DLL++LE+E G+E AESSAD Sbjct: 61 RILQNTIHDWFRRQKVRNTWISLFSSLR----DERDGDDNDLLDTLEAEAGTEMAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q + +I+ EIQ+LPTRQREAFLMRYW+DMDVAETAA MGCSEGSVKTHCSRATH Sbjct: 117 KVERAQVMAIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHT 176 Query: 181 LAQALRAKGISL 192 LAQALRA+G+ L Sbjct: 177 LAQALRARGVRL 188 >ref|YP_583065.1| RNA polymerase factor sigma-70 [Cupriavidus metallidurans CH34] gb|ABF07796.1| RNA polymerase sigma R factor (ECF) [Cupriavidus metallidurans CH34] Length = 188 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 149/192 (77%), Positives = 168/192 (87%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATD+ELSDFL SVERRAFKQAV+AVR DEAALDIVQDAMIKLAEKYGDK ELP LFQ Sbjct: 1 MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR+KVRNTWV+LFS N D G+D DLL++LE++ G+E AESSAD Sbjct: 61 RILQNTIHDWFRRQKVRNTWVTLFS----NLRDEREGDDSDLLDTLEAQAGTEMAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q +++I+ EIQ+LPTRQREAFLMRYW+DMDVAETAA MGCSEGSVKTHCSRATH Sbjct: 117 KVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHT 176 Query: 181 LAQALRAKGISL 192 LAQALRA+G+ L Sbjct: 177 LAQALRARGVRL 188 >ref|YP_001858248.1| RNA polymerase factor sigma-70 [Burkholderia phymatum STM815] gb|ACC71202.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phymatum STM815] Length = 187 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 148/192 (77%), Positives = 165/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQN +HD+FRR+KVRNTWVSLFSS G N D EDFD LE+ ES+DGS ESS Sbjct: 61 RILQNAMHDYFRRQKVRNTWVSLFSSLG-NADD----EDFDPLETFESQDGSTGVESSEQ 115 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 ++ER+Q L LID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 QLEREQVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187 >ref|YP_004684815.1| DNA-directed RNA polymerase sigma-24 subunit RpoE [Cupriavidus necator N-1] gb|AEI76334.1| DNA-directed RNA polymerase sigma-24 subunit RpoE [Cupriavidus necator N-1] Length = 188 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 150/192 (78%), Positives = 168/192 (87%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATD+ELSDFL SVERRAFKQAV+AVR DEAALDIVQDAMIKLAEKYGDK EL LFQ Sbjct: 1 MATDQELSDFLTSVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKGAAELAPLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR+KVRNTWVSLFSS + G+D DLLE+LE++ GSE+AESSAD Sbjct: 61 RILQNTIHDWFRRQKVRNTWVSLFSSLRTD----RDGDDNDLLETLEAQAGSESAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q +++I+ EIQ+LPTRQREAFLMRYW+DMDVAETAA MGCSEGSVKTHCSRATH Sbjct: 117 KVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHT 176 Query: 181 LAQALRAKGISL 192 LAQALRA+G+ L Sbjct: 177 LAQALRARGVRL 188 >ref|YP_001353841.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] gb|ABR89356.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 189 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/192 (75%), Positives = 165/192 (85%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE VERRAFKQAVYAVRK+E+ALDIVQDAMIKLAEKYGDKP ELPMLFQ Sbjct: 1 MATDKELSDFLEDVERRAFKQAVYAVRKEESALDIVQDAMIKLAEKYGDKPAPELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTI D+FRREKVR +W+SLFSSFG D E+FD ++ +E+E+GS AE+ Sbjct: 61 RILQNTIRDYFRREKVRTSWISLFSSFGNKQED---QENFDAMDMIEAEEGSYGAETGLV 117 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q L I+ E+Q LP+RQREAFLMRYWQD++VAETAA MGCSEGSVKTHCSRATHA Sbjct: 118 KLERKQVLEFIEHEVQNLPSRQREAFLMRYWQDLNVAETAAVMGCSEGSVKTHCSRATHA 177 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI L Sbjct: 178 LAQALKAKGIYL 189 >ref|YP_001894966.1| RNA polymerase factor sigma-70 [Burkholderia phytofirmans PsJN] gb|ACD15742.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phytofirmans PsJN] Length = 187 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 146/192 (76%), Positives = 164/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQN +HD+FRR KVRNTWVSLFSS G N D EDFD LE+ E++ GS +ES+ Sbjct: 61 RILQNAMHDYFRRAKVRNTWVSLFSSLG-NADD----EDFDPLETFEAQQGSAGSESNEQ 115 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q L LID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 KLEREQVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187 >ref|ZP_02882854.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] gb|EDT11138.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] Length = 187 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 146/192 (76%), Positives = 164/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQN +HD+FRR KVRNTWVSLFSSF GN D E FD LE+ E++ GS AES+ Sbjct: 61 RILQNAMHDYFRRAKVRNTWVSLFSSF-GNADDDE----FDPLETFEAQQGSAGAESNEQ 115 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q L +ID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 KLEREQVLQMIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187