BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0281.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775153.1| transmembrane protein [Herbaspirillum serope... 404 e-111 ref|YP_001353843.1| hypothetical protein mma_2153 [Janthinobacte... 149 5e-34 ref|YP_001099537.1| hypothetical protein HEAR1234 [Herminiimonas... 130 3e-28 ref|YP_003604543.1| transmembrane protein [Burkholderia sp. CCGE... 117 2e-24 ref|ZP_03267355.1| putative transmembrane protein [Burkholderia ... 117 2e-24 ref|YP_001858250.1| putative transmembrane protein [Burkholderia... 115 9e-24 ref|ZP_02882856.1| putative transmembrane protein [Burkholderia ... 114 3e-23 ref|YP_774196.1| hypothetical protein Bamb_2306 [Burkholderia am... 112 6e-23 ref|ZP_06843426.1| putative transmembrane protein [Burkholderia ... 111 1e-22 ref|YP_004029841.1| hypothetical protein RBRH_02503 [Burkholderi... 111 2e-22 >ref|YP_003775153.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63245.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/260 (91%), Positives = 241/260 (92%), Gaps = 2/260 (0%) Query: 1 MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAAAPAAAPAPA 60 MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAA PAAAPAPA Sbjct: 1 MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAATPAAAPAPA 60 Query: 61 PATSATPAAPVTPPAAAAAHPPA--KSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW 118 PA + + AAA KSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW Sbjct: 61 PAPATSATPAAPVTPPAAATAHPPAKSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW 120 Query: 119 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 178 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE Sbjct: 121 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 180 Query: 179 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPAP 238 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPAP Sbjct: 181 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPAP 240 Query: 239 TPAIAPVAPALVPGSQAAPQ 258 TPAIAPVAPALVPGSQAAPQ Sbjct: 241 TPAIAPVAPALVPGSQAAPQ 260 >ref|YP_001353843.1| hypothetical protein mma_2153 [Janthinobacterium sp. Marseille] gb|ABR90848.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 236 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 118/202 (58%), Gaps = 11/202 (5%) Query: 48 AAAAAPAAAPAPAPATSATPAAPVTPPAAAAAHPPAKSGVKSTARKSDNQLAWTNLSAAQ 107 A A P++AP AP SATPA P A A PP K+ N+ W L+ AQ Sbjct: 30 ATQAVPSSAPTFAP--SATPATATNPKPIAKAIPPTS--------KTTNKSEWNKLTPAQ 79 Query: 108 RQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAART 167 +QAL PL +W ++ +KEKWLE+ R+ M P EQ+R+ ERMRDWVKLTP +R AR Sbjct: 80 KQALAPLAADWGKLDSFRKEKWLELANRFTSMTPPEQERMQERMRDWVKLTPDQRRLARE 139 Query: 168 NYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEA 227 NY RAKKL+AE+K +QW +YQQLS+E+KK+L+E P++ P S Q A+ Sbjct: 140 NYNRAKKLNAEQKAKQWEEYQQLSDEKKKQLAETATPQKRIVNPPRLSNGQTNGQTQAKV 199 Query: 228 LDRPLPVVPAPTPAIAPVAPAL 249 +P P P P + + P+L Sbjct: 200 AVKPTP-AKQPVPRLEAIQPSL 220 >ref|YP_001099537.1| hypothetical protein HEAR1234 [Herminiimonas arsenicoxydans] emb|CAL61410.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 231 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 120/215 (55%), Gaps = 26/215 (12%) Query: 13 ARLSRIALAL--AVLAGGLSCAWTVAQNAPAEPAAPTAAAAAPAAAPAPAPATSATPAAP 70 +RL +IA AL +LAG L + PA AA A P AAP A T+A P A Sbjct: 11 SRLGKIAAALPPTLLAGALHAMSAPVPASAPSPAPQPAAVATPQAAPQQAAKTAAKPRAN 70 Query: 71 VTPPAAAAAHPPAKSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEWPRMSELQKEKWL 130 T AKS W LS AQ++AL PL +W R+ +KEKWL Sbjct: 71 TT----------AKS-------------EWNKLSPAQQRALAPLAGDWSRLDSFRKEKWL 107 Query: 131 EIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAEEKHEQWAKYQQL 190 E+ R+A M PEEQ R+ ERMRDWVKL+P +R AR +Y+R KKL+A++K QW +YQQL Sbjct: 108 ELANRFASMPPEEQARMQERMRDWVKLSPEQRRLARESYSRTKKLNAQQKSRQWEEYQQL 167 Query: 191 SEEQKKKLSEAKLPKR-VAKLPTSPSAAAPTIQLP 224 SEE+KK+L+ PK+ +A P + P I+ P Sbjct: 168 SEEKKKQLAATAKPKKPLANPPRQYAGKDPVIKQP 202 >ref|YP_003604543.1| transmembrane protein [Burkholderia sp. CCGE1002] gb|ADG15032.1| putative transmembrane protein [Burkholderia sp. CCGE1002] Length = 257 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 4/170 (2%) Query: 47 TAAAAAPAAAPAPAPATSATPAAPVTPPAAAAAHPPAKSGVKSTARKSDNQLAWTNLSAA 106 + A P P+P+PA +P V A A A G+ S++ LAW+ LSAA Sbjct: 20 SFVATYPRFHPSPSPAGHPSPGVNVAASAPAPALSVDLPGLPG----SNSPLAWSRLSAA 75 Query: 107 QRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAAR 166 +R AL P ++W S+ +K KW++I RYA+M P+ Q+RLHERM +WV++TP +R AR Sbjct: 76 ERVALAPFASQWDSFSDERKRKWIKIASRYAKMSPDAQKRLHERMSEWVRMTPDQRRVAR 135 Query: 167 TNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSA 216 NY +K+L E + W YQQL EE K++L+ ++ +R + + PSA Sbjct: 136 ENYQVSKELPREARQNAWKAYQQLPEEAKERLAASERKRRPSIVSAPPSA 185 >ref|ZP_03267355.1| putative transmembrane protein [Burkholderia sp. H160] gb|EEA01114.1| putative transmembrane protein [Burkholderia sp. H160] Length = 210 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 4/170 (2%) Query: 47 TAAAAAPAAAPAPAPATSATPAAPVTPPAAAAAHPPAKSGVKSTARKSDNQLAWTNLSAA 106 + AA P P+P+ A + +P A V PA A A G+ S++ LAW+ LSAA Sbjct: 20 SFAATYPRFHPSPSVAGNPSPGANVVAPAPAPALSVELPGLPG----SNSPLAWSRLSAA 75 Query: 107 QRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAAR 166 + AL P ++W S+ +K KW++I RYA+M P+ Q+RLH+RM +WV++TP +R AR Sbjct: 76 EHVALAPFESQWDSFSDERKRKWIKIASRYAKMSPDAQKRLHDRMNEWVRMTPDQRRVAR 135 Query: 167 TNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSA 216 NY +K+L E + W YQQL EE K++L+ ++ +R + + PSA Sbjct: 136 ENYQVSKELPREARQNAWKAYQQLPEETKERLAASEHKRRPSIVSAPPSA 185 >ref|YP_001858250.1| putative transmembrane protein [Burkholderia phymatum STM815] gb|ACC71204.1| putative transmembrane protein [Burkholderia phymatum STM815] Length = 252 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 75/113 (66%) Query: 94 SDNQLAWTNLSAAQRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRD 153 S + LAW+ L++A AL P T+W SE +K KWL+I RY +M PE Q+RLHERM + Sbjct: 61 STSPLAWSKLTSADHVALAPFETQWDGFSEERKRKWLKIASRYPKMTPEAQKRLHERMAE 120 Query: 154 WVKLTPAERSAARTNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKR 206 WV++TP +R AR NY +K+L E + W YQQL EEQK+KL+ ++ +R Sbjct: 121 WVRMTPEQRRVARENYQVSKELPREARQSAWKAYQQLPEEQKQKLAASEHKRR 173 >ref|ZP_02882856.1| putative transmembrane protein [Burkholderia graminis C4D1M] gb|EDT11140.1| putative transmembrane protein [Burkholderia graminis C4D1M] Length = 253 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 11/185 (5%) Query: 47 TAAAAAPAAAPAPAPATSATPAAPVTPPAAAAAHPPAKSGVKSTAR-KSDNQLAWTNLSA 105 + AA P P+P+PA APV AA P GV+ + S + +AW+ LSA Sbjct: 20 SFAATYPRFYPSPSPA-----GAPVANSNGAAPAPAPTLGVELPSLPGSKSPMAWSRLSA 74 Query: 106 AQRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAA 165 A+ AL P +W S+ +K KWL+I RY+++ PE Q+RLH+RM +WV++TP +R A Sbjct: 75 AEHIALAPFEAQWDSFSDERKRKWLKIASRYSKLSPEAQKRLHDRMTEWVRMTPDQRRVA 134 Query: 166 RTNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPA 225 R NY +K+L E + W YQ+L EEQK++L+ ++ +R + + PS + Sbjct: 135 RENYQVSKQLPREARQNAWKAYQELPEEQKQRLAASEHKRRPSVVSAPPSGRSEI----- 189 Query: 226 EALDR 230 + LDR Sbjct: 190 KGLDR 194 >ref|YP_774196.1| hypothetical protein Bamb_2306 [Burkholderia ambifaria AMMD] gb|ABI87862.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 254 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 3/166 (1%) Query: 98 LAWTNLSAAQRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKL 157 L+W L+ AQ AL P +W S+ +K KWL+I R+A++ P+EQ+ L +RM +W ++ Sbjct: 70 LSWARLTPAQHAALAPFADQWDGFSDARKRKWLKIASRFAKLTPDEQKHLQDRMSEWARM 129 Query: 158 TPAERSAARTNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAA 217 TP +R AR NY AK+L A+ + W YQQL EEQK++L+ + +R + + P+ A Sbjct: 130 TPEQRRVARENYQSAKELSAQARERAWKAYQQLPEEQKQRLAATERRRRPSVVSAPPTVA 189 Query: 218 APTIQLPAEALDRP---LPVVPAPTPAIAPVAPALVPGSQAAPQPA 260 ++ + D P + VP P A A + PA S AP PA Sbjct: 190 DRDVRRLVNSHDHPASNVAAVPVPASASAGLPPAASSTSGTAPAPA 235 >ref|ZP_06843426.1| putative transmembrane protein [Burkholderia sp. Ch1-1] gb|EFG68940.1| putative transmembrane protein [Burkholderia sp. Ch1-1] Length = 254 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 87/137 (63%), Gaps = 5/137 (3%) Query: 94 SDNQLAWTNLSAAQRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRD 153 S++ +AW++L+AA+ AL P ++W SE +K KW++I RY +M P+ Q+RLHERM + Sbjct: 63 SNSPMAWSHLTAAEHIALAPFESQWDSFSEERKRKWIKIASRYPKMSPDAQKRLHERMTE 122 Query: 154 WVKLTPAERSAARTNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTS 213 W ++TP +R AR NY +K+L E + W YQQL EEQK++L+ ++ +R S Sbjct: 123 WTRMTPDQRRVARENYQVSKELPRETRQNAWKAYQQLPEEQKERLAASERKRR-----PS 177 Query: 214 PSAAAPTIQLPAEALDR 230 +A P+ + + LDR Sbjct: 178 VVSAPPSGRTEIKGLDR 194 >ref|YP_004029841.1| hypothetical protein RBRH_02503 [Burkholderia rhizoxinica HKI 454] emb|CBW75697.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 269 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/111 (45%), Positives = 76/111 (68%) Query: 96 NQLAWTNLSAAQRQALEPLTTEWPRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWV 155 N L+W L+AAQR AL PL +W S+ + KWL+I RY +M+ EEQQRLH+RM +W+ Sbjct: 67 NPLSWARLTAAQRDALAPLAPQWDHFSDERXRKWLKIAARYPKMRIEEQQRLHQRMAEWI 126 Query: 156 KLTPAERSAARTNYARAKKLDAEEKHEQWAKYQQLSEEQKKKLSEAKLPKR 206 ++TP +R AR NY +K+L + + + W+ YQQL +E K+KL+ A+ +R Sbjct: 127 RMTPEQRRVARENYQLSKELSVQAREKAWSAYQQLPDELKRKLAAAEKARR 177