BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0280.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775152.1| transmembrane protein [Herbaspirillum serope... 328 2e-88 ref|YP_004751912.1| putative transmembrane protein [Collimonas f... 213 6e-54 ref|ZP_08273826.1| putative transmembrane protein [Oxalobacterac... 181 5e-44 emb|CAL61409.2| conserved hypothetical protein; putative RDD dom... 172 2e-41 ref|YP_001099536.1| hypothetical protein HEAR1233 [Herminiimonas... 171 2e-41 ref|YP_001353844.1| hypothetical protein mma_2154 [Janthinobacte... 161 3e-38 ref|YP_003604542.1| RDD domain containing protein [Burkholderia ... 159 1e-37 ref|YP_557799.1| putative transmembrane protein [Burkholderia xe... 153 9e-36 ref|ZP_08406512.1| RDD domain-containing protein [Hylemonella gr... 153 9e-36 ref|YP_001894963.1| RDD domain containing protein [Burkholderia ... 152 1e-35 >ref|YP_003775152.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63244.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 168 Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 168/168 (100%), Positives = 168/168 (100%) Query: 1 MPDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLAL 60 MPDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLAL Sbjct: 1 MPDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLAL 60 Query: 61 YFIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQ 120 YFIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQ Sbjct: 61 YFIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQ 120 Query: 121 WTLVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAMAATSKS 168 WTLVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAMAATSKS Sbjct: 121 WTLVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAMAATSKS 168 >ref|YP_004751912.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK61089.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 182 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 106/158 (67%), Positives = 127/158 (80%) Query: 6 TPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWF 65 TPSL+RR S++YESMLLFG+LFISGW+FSTLLQQRHALYLRH + WLF+VL LYF+W Sbjct: 15 TPSLKRRFGSIMYESMLLFGILFISGWIFSTLLQQRHALYLRHAQQAWLFIVLTLYFVWC 74 Query: 66 WTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWTLVL 125 W+HGGQTLAMKTWR ++V++ G+A+ RAA RFLL+W W LPGLALA A+ W LV Sbjct: 75 WSHGGQTLAMKTWRIQLVNRDGSAVKAGRAAIRFLLSWCWFLPGLALAWALGAHTWMLVW 134 Query: 126 IPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAMA 163 IPA N +LWALT LD QFLHDR+AGTRLVD+ +A Sbjct: 135 IPAANFLLWALTIYLDPQRQFLHDRIAGTRLVDMAEIA 172 >ref|ZP_08273826.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32690.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 150 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 93/147 (63%), Positives = 112/147 (76%) Query: 16 MLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWFWTHGGQTLAM 75 MLYE MLLFGVLFI+GWLF TLLQQRHALYLR L+ WLF V+ YFIWFW+HGGQTLAM Sbjct: 1 MLYEGMLLFGVLFIAGWLFGTLLQQRHALYLRGILQYWLFFVMGAYFIWFWSHGGQTLAM 60 Query: 76 KTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWTLVLIPAGNIVLWA 135 KTWR R+V + G+ + + +A+ RFLL+WLWV+PGL LA Q W LVLIPA N+V+WA Sbjct: 61 KTWRVRLVAEDGSRVSVLQASARFLLSWLWVVPGLMLAWRFQAQGWLLVLIPAANVVIWA 120 Query: 136 LTARLDKDGQFLHDRLAGTRLVDVTAM 162 LD +F+HDRLA T+LV V + Sbjct: 121 GLCWLDPSRRFVHDRLARTKLVGVPEL 147 >emb|CAL61409.2| conserved hypothetical protein; putative RDD domain; putative membrane protein [Herminiimonas arsenicoxydans] Length = 170 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 110/155 (70%) Query: 6 TPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWF 65 TP+++RRL+ M+YE +LLFGV+ I+ LF+ + QQRHALYLRH + WLF+V+ YFIWF Sbjct: 13 TPTIKRRLTVMIYEGVLLFGVVAIADLLFALIFQQRHALYLRHAAQYWLFIVIGAYFIWF 72 Query: 66 WTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWTLVL 125 W H GQTL MKTWR R+V G L RA R+ LAWLW +PGLA+A + ++WT V Sbjct: 73 WMHSGQTLPMKTWRMRLVTLDGRQLPFRRALARYFLAWLWFVPGLAIAWLLGAKEWTAVA 132 Query: 126 IPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVT 160 I NI+ WALTA L QFLHDR+AGT+++ + Sbjct: 133 IVMANILAWALTASLHPSRQFLHDRIAGTKIIQLN 167 >ref|YP_001099536.1| hypothetical protein HEAR1233 [Herminiimonas arsenicoxydans] Length = 165 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 110/155 (70%) Query: 6 TPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWF 65 TP+++RRL+ M+YE +LLFGV+ I+ LF+ + QQRHALYLRH + WLF+V+ YFIWF Sbjct: 8 TPTIKRRLTVMIYEGVLLFGVVAIADLLFALIFQQRHALYLRHAAQYWLFIVIGAYFIWF 67 Query: 66 WTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWTLVL 125 W H GQTL MKTWR R+V G L RA R+ LAWLW +PGLA+A + ++WT V Sbjct: 68 WMHSGQTLPMKTWRMRLVTLDGRQLPFRRALARYFLAWLWFVPGLAIAWLLGAKEWTAVA 127 Query: 126 IPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVT 160 I NI+ WALTA L QFLHDR+AGT+++ + Sbjct: 128 IVMANILAWALTASLHPSRQFLHDRIAGTKIIQLN 162 >ref|YP_001353844.1| hypothetical protein mma_2154 [Janthinobacterium sp. Marseille] gb|ABR89354.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 165 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 110/157 (70%) Query: 6 TPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWF 65 TP+++RRL++M+YE +LLFGV+ I+ LFST+ QQRHALYLRH L+ WLF V+ YF+WF Sbjct: 8 TPTIKRRLTTMMYEGVLLFGVVAIAALLFSTIFQQRHALYLRHALQYWLFFVVGAYFVWF 67 Query: 66 WTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWTLVL 125 W H GQTL MKTWR R++ L A R+ LAWLW LPGLA+A A+ + WT V Sbjct: 68 WIHSGQTLPMKTWRIRLLTVDDQTLSFKHAVARYFLAWLWFLPGLAIAWALDAKAWTSVA 127 Query: 126 IPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAM 162 I NI WAL A + QFLHDR+AGT+LV ++ + Sbjct: 128 IVCANIAAWALAAYIHPSRQFLHDRIAGTKLVQLSKI 164 >ref|YP_003604542.1| RDD domain containing protein [Burkholderia sp. CCGE1002] gb|ADG15031.1| RDD domain containing protein [Burkholderia sp. CCGE1002] Length = 174 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 2/160 (1%) Query: 2 PDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALY 61 P T P++RRRL+++LYE+++LFGV+F +G+LFSTL QQR+ L + L W+ LV+ +Y Sbjct: 15 PGGTAPTVRRRLAALLYEAVILFGVVFFAGYLFSTLTQQRNGLAHHNLLAGWIGLVVGVY 74 Query: 62 FIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQW 121 F+WFWTHGGQTL MKTWR RVV GA + + RA R+LLAWLW LP LA A + G + Sbjct: 75 FVWFWTHGGQTLPMKTWRLRVVGADGAPVSIGRAIGRYLLAWLWFLPPLA-AHPLLGLRV 133 Query: 122 TLVLIPAGN-IVLWALTARLDKDGQFLHDRLAGTRLVDVT 160 L+ AG V+WA + R QFLHDRLAGTR+V V Sbjct: 134 PQTLVVAGVWFVVWAASGRFGPQRQFLHDRLAGTRVVQVV 173 >ref|YP_557799.1| putative transmembrane protein [Burkholderia xenovorans LB400] gb|ABE29747.1| Putative transmembrane protein [Burkholderia xenovorans LB400] Length = 173 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 84/159 (52%), Positives = 110/159 (69%) Query: 2 PDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALY 61 P P++RRRL+++LYE+++LFGV+F++G+LFSTL QQR+ L + L W+ LV+ +Y Sbjct: 14 PTGNVPTVRRRLAALLYEALILFGVVFVAGYLFSTLTQQRNGLTHHNLLAAWIGLVVGVY 73 Query: 62 FIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQW 121 F+WFWTH GQTL MKTWR RVV +GA L RA R++ AWLW LP LAL + + Sbjct: 74 FVWFWTHSGQTLPMKTWRLRVVAANGAPLSTGRAIARYVFAWLWFLPPLALHPLLGLKLP 133 Query: 122 TLVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVT 160 +LI VLWA T R D QFLHDRLAGTR+V V+ Sbjct: 134 QTLLIAGIWFVLWAATGRFDSQRQFLHDRLAGTRVVSVS 172 >ref|ZP_08406512.1| RDD domain-containing protein [Hylemonella gracilis ATCC 19624] gb|EGI76370.1| RDD domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 184 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 93/155 (60%), Positives = 106/155 (68%), Gaps = 3/155 (1%) Query: 6 TPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWF 65 TP L RR++ LYE MLLFGVLFI+G+LFSTL QQRHAL RH L +LFLVL +YF WF Sbjct: 24 TPGLMRRMACWLYEGMLLFGVLFIAGYLFSTLTQQRHALTGRHALMAFLFLVLGIYFTWF 83 Query: 66 WTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVH-GQQWTLV 124 W+ GQTLAMKTW RV D G AL RA R+LL+W W LP LAL A H G T V Sbjct: 84 WSK-GQTLAMKTWHIRVTDLRGQALTQARALLRYLLSWSWFLPPLALIAPFHLGAGETSV 142 Query: 125 LIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDV 159 L+ G I++WAL AR QF HD LAGT+LVD Sbjct: 143 LM-IGWILVWALLARFHPRRQFWHDVLAGTQLVDA 176 >ref|YP_001894963.1| RDD domain containing protein [Burkholderia phytofirmans PsJN] gb|ACD15739.1| RDD domain containing protein [Burkholderia phytofirmans PsJN] Length = 174 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/154 (54%), Positives = 110/154 (71%) Query: 7 PSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLALYFIWFW 66 P++RRRL+++LYE+++LFGV+FI+G+LFSTL QQR+ L + L W+ LV+ +YF+WFW Sbjct: 20 PTVRRRLAALLYEALILFGVVFIAGYLFSTLTQQRNGLTHHNLLAAWIGLVVGVYFVWFW 79 Query: 67 THGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWTLVLI 126 TH GQTL MKTWR RVV +GA L RA R++LAWLW LP LAL + + ++I Sbjct: 80 THSGQTLPMKTWRLRVVAANGAPLSTGRAIARYVLAWLWFLPPLALHPLLGLKLPQTLII 139 Query: 127 PAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVT 160 VLWA T R D QFLHDRLAGTR+V V+ Sbjct: 140 AGIWFVLWAATGRFDPQRQFLHDRLAGTRIVSVS 173