BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0276.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777193.1| sigma54-dependent transcription regulator pr... 461 e-128 ref|YP_003911150.1| sigma54 specific transcriptional regulator, ... 249 5e-64 ref|YP_001020809.1| acetoin catabolism regulatory protein [Methy... 249 5e-64 ref|YP_001889376.1| Fis family GAF modulated sigma54 specific tr... 242 7e-62 ref|YP_935377.1| sigma-54-dependent transcriptional regulator [A... 239 8e-61 ref|YP_902760.1| Fis family GAF modulated sigma54 specific trans... 238 1e-60 ref|ZP_03697401.1| sigma54 specific transcriptional regulator, F... 237 2e-60 ref|ZP_08821773.1| GAF modulated sigma54 specific transcriptiona... 237 2e-60 ref|YP_001749555.1| Fis family GAF modulated sigma54 specific tr... 236 4e-60 ref|ZP_01915903.1| GAF modulated sigma54 specific transcriptiona... 236 7e-60 >ref|YP_003777193.1| sigma54-dependent transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65285.1| sigma54-dependent transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 437 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/229 (99%), Positives = 228/229 (99%) Query: 1 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLI 60 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDL+ERGKRLI Sbjct: 53 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLIERGKRLI 112 Query: 61 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 120 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS Sbjct: 113 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 172 Query: 121 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 180 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI Sbjct: 173 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 232 Query: 181 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMAT 229 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQM T Sbjct: 233 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMIT 281 >ref|YP_003911150.1| sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] gb|ADN61859.1| sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] Length = 390 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 121/195 (62%), Positives = 149/195 (76%) Query: 39 IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98 + +L DA M ++ R + LIDR +P+LILGETGTGKEYL+RALHDYS+RR AS ++VN Sbjct: 22 LGRLCGNDATMLAVLSRARLLIDRQLPILILGETGTGKEYLARALHDYSSRRHASMVSVN 81 Query: 99 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158 C SIPE+L ESELFGY +GAFSGAL GMKGKV A GTLFLDEIGDMP A QTRLLR Sbjct: 82 CGSIPENLIESELFGYTRGAFSGALSSGMKGKVVLAHRGTLFLDEIGDMPAAQQTRLLRA 141 Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218 LSEREV P+G+ P+ VD+QLICATHQ++++ + G FREDLYYR+A G++ LP +RER Sbjct: 142 LSEREVTPIGSAEPIAVDLQLICATHQNIESRVEAGTFREDLYYRIAVGIIHLPPVRERH 201 Query: 219 DRRRLVMQMATVTGP 233 DR L+ + P Sbjct: 202 DRAWLLQSILEREAP 216 >ref|YP_001020809.1| acetoin catabolism regulatory protein [Methylibium petroleiphilum PM1] gb|ABM94574.1| acetoin catabolism regulatory protein [Methylibium petroleiphilum PM1] Length = 666 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 126/210 (60%), Positives = 154/210 (73%), Gaps = 5/210 (2%) Query: 15 ADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGT 74 AD V ST ARSA S + +D+LA GD M L+ + KRL+DR + +LI GETG+ Sbjct: 324 ADRPVAVSTVARSADS-----FPALDRLAGGDPAMDRLLVQAKRLVDRKVNILIHGETGS 378 Query: 75 GKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQA 134 GKE ++ALH+ S+R R +IAVNCASIPESL ESELFGY G+F+G GMKG + QA Sbjct: 379 GKEVFAKALHESSSRARMPFIAVNCASIPESLIESELFGYTPGSFTGGKSKGMKGLILQA 438 Query: 135 DGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEG 194 GGTLFLDEIGDMPL LQTR LRVLSE EV+PLGA P+PVD +I ATH+DL+ +A G Sbjct: 439 HGGTLFLDEIGDMPLHLQTRFLRVLSESEVLPLGAERPIPVDFTVIAATHRDLRDRVAAG 498 Query: 195 RFREDLYYRVAGGVLRLPALRERSDRRRLV 224 FREDLYYR+ G + LPALRER+D+R L+ Sbjct: 499 TFREDLYYRLCGATMSLPALRERADKRYLI 528 >ref|YP_001889376.1| Fis family GAF modulated sigma54 specific transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD20006.1| GAF modulated sigma54 specific transcriptional regulator, Fis family [Burkholderia phytofirmans PsJN] Length = 663 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/225 (55%), Positives = 162/225 (72%), Gaps = 6/225 (2%) Query: 9 PLAEAEADSDVRTSTAARSASSRHAPRYRD------IDQLAAGDACMHDLVERGKRLIDR 62 P A ++S TS A S+ +RHAPR D ++ L GDA + ++ R +L R Sbjct: 292 PRYVAPSESLAGTSRAPLSSDARHAPRVADPAPPATLETLDTGDAQVAAILRRVAKLRGR 351 Query: 63 GIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGA 122 IP+L+LG+TGTGKE+L+RA+H S RR A +IA+NCAS+PE+L E+ELFGY GAF+GA Sbjct: 352 DIPILVLGKTGTGKEWLARAIHHDSPRRDAPFIALNCASLPETLIEAELFGYEDGAFTGA 411 Query: 123 LPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICA 182 G GK+ QADGGTLFLDEIGDMPLA Q RL+RVL ER V+PLG +PVD++++CA Sbjct: 412 KKRGSVGKIVQADGGTLFLDEIGDMPLAQQVRLMRVLQERNVVPLGGTRAIPVDLRIVCA 471 Query: 183 THQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQM 227 TH++L+ +I G FREDLYYR+ G VL LPALRER+D R LV +M Sbjct: 472 THRNLRAMIEAGTFREDLYYRINGLVLTLPALRERTDLRALVTRM 516 >ref|YP_935377.1| sigma-54-dependent transcriptional regulator [Azoarcus sp. BH72] emb|CAL96491.1| Sigma-54-dependent transcriptional regulator [Azoarcus sp. BH72] Length = 655 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 116/201 (57%), Positives = 151/201 (75%) Query: 39 IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98 +++LA D M L+ + RL++R + +L+ GETGTGKE L++ALH+ S+R ++AVN Sbjct: 329 LERLAGNDPQMQRLIAQASRLVNRPVNILVHGETGTGKEVLAKALHESSSRATKPFVAVN 388 Query: 99 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158 CA+IPESL ESELFGY G F+G GM+G +QQADGGTLFLDEIGDMPL LQTRLLRV Sbjct: 389 CAAIPESLIESELFGYTAGTFTGGRSKGMRGLIQQADGGTLFLDEIGDMPLHLQTRLLRV 448 Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218 L+EREV+PLGA PVPV++ ++ A+H+DL+ LIAEG FREDLYYR+ G +L LP LRER Sbjct: 449 LAEREVLPLGAEKPVPVNLTVVAASHRDLRKLIAEGSFREDLYYRLCGAILYLPPLRERR 508 Query: 219 DRRRLVMQMATVTGPASRTAA 239 DR L+ ++ G T+A Sbjct: 509 DRDYLIDRLLAAEGAELGTSA 529 >ref|YP_902760.1| Fis family GAF modulated sigma54 specific transcriptional regulator [Pelobacter propionicus DSM 2379] gb|ABL00703.1| GAF modulated sigma54 specific transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 666 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 119/203 (58%), Positives = 154/203 (75%), Gaps = 1/203 (0%) Query: 23 TAARSASSRHAPRYR-DIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSR 81 + R+A ++ PR R ++QLA D M R R+++RGIP+L+ GETGTGKE +R Sbjct: 330 NSDRAAQPKNRPRARLGLNQLAGADPQMRRNATRALRVMNRGIPILLTGETGTGKEVFAR 389 Query: 82 ALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFL 141 A+H+ S R +IA+NCASIPESL ESELFGY +GAF+GA GM+GK+ QADGGTLFL Sbjct: 390 AIHESSDRAAKPFIALNCASIPESLIESELFGYRQGAFTGAHIKGMRGKILQADGGTLFL 449 Query: 142 DEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLY 201 DEIGDMPL+LQTRLLRVL+E+EV+PLG+ PV VD+ +ICAT ++L+ L+ +GRFREDLY Sbjct: 450 DEIGDMPLSLQTRLLRVLAEKEVLPLGSESPVRVDLNVICATLRNLEELVRDGRFREDLY 509 Query: 202 YRVAGGVLRLPALRERSDRRRLV 224 YR+ G + LP LRER DR L+ Sbjct: 510 YRLNGITITLPPLREREDRDMLI 532 >ref|ZP_03697401.1| sigma54 specific transcriptional regulator, Fis family [Lutiella nitroferrum 2002] gb|EEG09887.1| sigma54 specific transcriptional regulator, Fis family [Lutiella nitroferrum 2002] Length = 660 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/232 (54%), Positives = 163/232 (70%), Gaps = 4/232 (1%) Query: 20 RTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYL 79 R + +A + S P +D+LA D M ++E+ KRL+++G+ +LI GETGTGKE Sbjct: 322 RPAVSATARESVPLPACPALDRLAGDDRQMQRILEQSKRLVNKGVNILIHGETGTGKEVF 381 Query: 80 SRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTL 139 ++ALH+ S R +IAVNCA+IP+SL ESELFGY G F+GA GMKG +QQ+D GTL Sbjct: 382 AKALHESSERAARPFIAVNCAAIPDSLIESELFGYAPGTFTGARSKGMKGLIQQSDRGTL 441 Query: 140 FLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFRED 199 FLDEIGDMPL LQTRLLRVLSEREV+PLGA PV V++ +I A+H+DL+ LIA G+FRED Sbjct: 442 FLDEIGDMPLHLQTRLLRVLSEREVLPLGADKPVRVELTVIAASHRDLRKLIAGGQFRED 501 Query: 200 LYYRVAGGVLRLPALRERSDRR----RLVMQMATVTGPASRTAAXAMAVGID 247 LYYR+ G L LP LRER D+R RL + A +G + A A+A +D Sbjct: 502 LYYRLCGATLFLPPLRERQDKRYLIERLFAEEAAQSGQSPVLAEAALACLMD 553 >ref|ZP_08821773.1| GAF modulated sigma54 specific transcriptional regulator, Fis family [Thiorhodococcus drewsii AZ1] gb|EGV33378.1| GAF modulated sigma54 specific transcriptional regulator, Fis family [Thiorhodococcus drewsii AZ1] Length = 654 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 112/194 (57%), Positives = 147/194 (75%) Query: 35 RYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASW 94 RY D L GD M +E ++++DR IP ++ GETG GK+ SRA+H S RR + Sbjct: 338 RYDPFDALHFGDPRMKRNIETIRKVLDRDIPCMLFGETGVGKDVFSRAMHQSSERRDKPF 397 Query: 95 IAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTR 154 +A+NCAS+PESL ESELFGY GAF+GA G +GK+ QADGGTLFLDEIGDMP+ LQ R Sbjct: 398 VALNCASLPESLIESELFGYKAGAFTGASRDGNRGKILQADGGTLFLDEIGDMPIHLQAR 457 Query: 155 LLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPAL 214 LLRVL +R V+PLG P+PV +QLI ATH+D+++LIAEG+FREDLYYR+ G +++PAL Sbjct: 458 LLRVLEDRTVVPLGGDKPIPVSIQLISATHRDVRSLIAEGKFREDLYYRIHGISIQIPAL 517 Query: 215 RERSDRRRLVMQMA 228 R+R+DRR L+ ++A Sbjct: 518 RDRADRRELIRRIA 531 >ref|YP_001749555.1| Fis family GAF modulated sigma54 specific transcriptional regulator [Pseudomonas putida W619] gb|ACA73186.1| GAF modulated sigma54 specific transcriptional regulator, Fis family [Pseudomonas putida W619] Length = 637 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/186 (61%), Positives = 146/186 (78%) Query: 39 IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98 ++QLA D + V R ++++D+ I +L+ GETGTGKE +RALH S R ++A+N Sbjct: 327 LEQLAGQDVQLQQDVRRLRKVLDKDIAILLNGETGTGKEAFARALHQVSQRHAKPFVALN 386 Query: 99 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158 CA+IPESL ESELFGY G+F+GA GMKGK++QA+GGTLFLDEIGDMP LQTRLLRV Sbjct: 387 CAAIPESLIESELFGYRAGSFTGASRKGMKGKLEQANGGTLFLDEIGDMPAHLQTRLLRV 446 Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218 L+ERE++PLGA PV +D+Q+I ATHQDL+ +I E RFREDLYYR+ G +RLPALRERS Sbjct: 447 LAERELVPLGAETPVLLDIQVISATHQDLQAMIGEKRFREDLYYRLCGMRMRLPALRERS 506 Query: 219 DRRRLV 224 DRR L+ Sbjct: 507 DRRELI 512 >ref|ZP_01915903.1| GAF modulated sigma54 specific transcriptional regulator, Fis family protein [Limnobacter sp. MED105] gb|EDM82932.1| GAF modulated sigma54 specific transcriptional regulator, Fis family protein [Limnobacter sp. MED105] Length = 796 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 157/206 (76%) Query: 22 STAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSR 81 +T + + + +P + L GD + ++E+ ++ID+ IP+LILGETGTGKE L++ Sbjct: 335 ATQKANTTCQKSPHLSSLKYLNTGDPQVAKIIEKVCKVIDKDIPILILGETGTGKEILAQ 394 Query: 82 ALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFL 141 A+H+ S R ++AVNCASIPE+L ESELFGY GAF+GA G +G++ QA+GGTLFL Sbjct: 395 AIHNDSPRHDKPFVAVNCASIPETLIESELFGYEDGAFTGAKKKGSQGRILQANGGTLFL 454 Query: 142 DEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLY 201 DEIGDMP++LQ RLLRVL ER V PLG++ +PV++Q+ICATH++L+ IA G+FREDLY Sbjct: 455 DEIGDMPISLQARLLRVLQERVVTPLGSQKSIPVNLQVICATHRNLRDQIAAGQFREDLY 514 Query: 202 YRVAGGVLRLPALRERSDRRRLVMQM 227 YR+ G V+R+PALRER+D ++++ ++ Sbjct: 515 YRLHGLVVRIPALRERTDLQKIIQRI 540