BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0254.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum ... 543 e-153 ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacteri... 370 e-100 ref|YP_004753138.1| tRNA:Cm32/Um32 methyltransferase [Collimonas... 369 e-100 ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Hermin... 367 1e-99 ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacter... 363 2e-98 ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter form... 332 5e-89 ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter form... 327 1e-87 ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 ... 271 8e-71 gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49] 270 2e-70 emb|CCA86146.1| putative tRNA/rRNA methyltransferase [Ralstonia ... 270 2e-70 >ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 271/271 (100%), Positives = 271/271 (100%) Query: 1 VSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASG 60 VSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASG Sbjct: 5 VSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASG 64 Query: 61 ALDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLF 120 ALDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLF Sbjct: 65 ALDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLF 124 Query: 121 GNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGD 180 GNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGD Sbjct: 125 GNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGD 184 Query: 181 ARSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETE 240 ARSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETE Sbjct: 185 ARSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETE 244 Query: 241 EVNILRGIARQILEPKQAKAGRREQNEQGEG 271 EVNILRGIARQILEPKQAKAGRREQNEQGEG Sbjct: 245 EVNILRGIARQILEPKQAKAGRREQNEQGEG 275 >ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] Length = 253 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/251 (71%), Positives = 214/251 (85%), Gaps = 10/251 (3%) Query: 6 LFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVL 65 LF+RLRF+LV TS PGNIG+AARAIK MGF+ELVLVNPRFPDA ++EAVAFASGA D+L Sbjct: 10 LFNRLRFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDIL 69 Query: 66 QNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNERF 125 Q ARIVGS+EEAL CNFAAAV+ARLREFSPPV+SPR LA +L +TGL AA++FGNERF Sbjct: 70 QAARIVGSIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEETGLRAAVVFGNERF 129 Query: 126 GLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPG 185 GLPNE+V+KCN L+NI ANP+YSSLNL+QAVQVLAYE RM + G+ R+ Sbjct: 130 GLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAV----------GETRAAT 179 Query: 186 EVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNIL 245 ++GF G++AS+A+I+GM+AHLEQALVAIDFL+ +NPKKLMPRLKR+FSR QLETEEVNIL Sbjct: 180 DIGFQGEAASMAQIDGMYAHLEQALVAIDFLDANNPKKLMPRLKRLFSRTQLETEEVNIL 239 Query: 246 RGIARQILEPK 256 RGIA+QIL K Sbjct: 240 RGIAKQILAQK 250 >ref|YP_004753138.1| tRNA:Cm32/Um32 methyltransferase [Collimonas fungivorans Ter331] gb|AEK62315.1| tRNA:Cm32/Um32 methyltransferase [Collimonas fungivorans Ter331] Length = 258 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/256 (71%), Positives = 215/256 (83%), Gaps = 14/256 (5%) Query: 5 SLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDV 64 SLF+RLRFVLV TSSPGN+G+AARAIKTMGFSEL+LVNPRFPD ++ DEAVAFASGA D+ Sbjct: 9 SLFNRLRFVLVETSSPGNVGAAARAIKTMGFSELILVNPRFPDVLQRDEAVAFASGAQDI 68 Query: 65 LQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNER 124 L ARIV SVE+AL+GCNFAAA+SARLREFSPP+ +PR LA QL D LNAA++FG+ER Sbjct: 69 LAAARIVDSVEQALEGCNFAAALSARLREFSPPLTAPRALAAQLVADASLNAAVIFGSER 128 Query: 125 FGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSP 184 +GLPNE+V+KCN LLNIPANPEYSSLNL+QAVQVLAYECR+ + + SP Sbjct: 129 YGLPNEIVEKCNVLLNIPANPEYSSLNLAQAVQVLAYECRV-----------AASEDLSP 177 Query: 185 ---GEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEE 241 GEVGF G +AS+A+I+GMFAHLEQALV I+FL+P +PKKLMPRLKR+FSR QLETEE Sbjct: 178 ATGGEVGFQGNAASLADIDGMFAHLEQALVEIEFLDPASPKKLMPRLKRLFSRTQLETEE 237 Query: 242 VNILRGIARQILEPKQ 257 VNILRGIA QIL ++ Sbjct: 238 VNILRGIASQILNKRR 253 >ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] Length = 248 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 179/252 (71%), Positives = 213/252 (84%), Gaps = 9/252 (3%) Query: 6 LFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVL 65 LF+RLRFVLV TS PGNIG+AARAIK MGFSELVLVNPRFPDA ++EA+AFASGA D+L Sbjct: 3 LFNRLRFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDIL 62 Query: 66 QNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNERF 125 +ARIVGS+EEAL CN+AAAV+ARLREFSPPV++PRELA +L+ + GL AA++FGNERF Sbjct: 63 ASARIVGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLADEAGLQAAVIFGNERF 122 Query: 126 GLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPG 185 GLPNE+V+KCN L+NIPANP+YSSLNL+QAVQVLAYE RM + P S Sbjct: 123 GLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMA--AIVDAPSAVSN------ 174 Query: 186 EVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNIL 245 +GF G++A +A+IEGM+AHLEQALVAIDFL+ DNPKKLMPRLKR+FSR QLETEEVNIL Sbjct: 175 -IGFQGEAAGMAQIEGMYAHLEQALVAIDFLDADNPKKLMPRLKRLFSRTQLETEEVNIL 233 Query: 246 RGIARQILEPKQ 257 RGIA+QIL ++ Sbjct: 234 RGIAKQILAKQK 245 >ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/249 (71%), Positives = 205/249 (82%), Gaps = 10/249 (4%) Query: 5 SLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDV 64 SLF+RLRFVLV TS PGNIG+AARA+KTMGF++LVLVNPRF DA ++DEAVAFASGA DV Sbjct: 9 SLFTRLRFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFASGAQDV 68 Query: 65 LQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNER 124 L NARIVGS+EEAL CN+AAAVSARLREFSPPV PR+ A +++ + L AL+ GNER Sbjct: 69 LANARIVGSIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAALRVALVLGNER 128 Query: 125 FGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSP 184 FGLPNE+V+KCN L+NIPANP YSSLNL QAVQVLAYECRM L GD Sbjct: 129 FGLPNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAAL----------GDDAIA 178 Query: 185 GEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNI 244 EVGFHG +AS+ ++EGM+ HLEQALVAIDFL PD+PKKLMPRLKR+F+R LETEEVNI Sbjct: 179 TEVGFHGDAASLTQVEGMYQHLEQALVAIDFLKPDSPKKLMPRLKRLFARTGLETEEVNI 238 Query: 245 LRGIARQIL 253 LRGIA+QIL Sbjct: 239 LRGIAKQIL 247 >ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13] Length = 257 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 159/251 (63%), Positives = 199/251 (79%), Gaps = 7/251 (2%) Query: 2 SGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGA 61 + S+FS LRF+LV TS PGN+G+AARAIKTMGFS LVLV PRF D +K++EA+AFASGA Sbjct: 6 TDTSVFSTLRFILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGA 65 Query: 62 LDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFG 121 D+L+NA IV ++EEAL+ C+FAAA+SARLREFSPP+ +PR+ A + N AL+FG Sbjct: 66 QDILENALIVETLEEALEDCHFAAALSARLREFSPPIFTPRQFADNIFTGEHANCALVFG 125 Query: 122 NERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDA 181 +ER+GL NE V++C+AL+NIPANP+YSSLNL+QA+Q+LAYECRM L+ + P + Sbjct: 126 SERYGLSNEDVEQCHALINIPANPDYSSLNLAQAIQILAYECRMAILDKENLPTRDE--- 182 Query: 182 RSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEE 241 +GFHG+ ASV +I MF HLE AL I FLNPDNPKKLMPRL+R+FSR+ LETEE Sbjct: 183 ----HIGFHGEPASVDQINRMFIHLETALTTIGFLNPDNPKKLMPRLRRLFSRSSLETEE 238 Query: 242 VNILRGIARQI 252 VNILRGIARQI Sbjct: 239 VNILRGIARQI 249 >ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS] Length = 259 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 160/258 (62%), Positives = 197/258 (76%), Gaps = 9/258 (3%) Query: 2 SGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGA 61 + S+F LRF+LV TS PGN+G+AARAIKTMGF L+LV PRF + + +EA+AFASGA Sbjct: 6 TDTSIFQSLRFILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFASGA 65 Query: 62 LDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFG 121 DVL+ A IV ++++AL+ C FAAA++ARLREFSPPV++PR+ A + D AL+FG Sbjct: 66 QDVLEKAEIVDTIDQALENCQFAAAITARLREFSPPVLTPRQFAETVLSDKKKPCALVFG 125 Query: 122 NERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDA 181 +ER+GLPNEVV++C AL+NIPANP YSSLNL+QA+QVLAYECRM L G P + Sbjct: 126 SERYGLPNEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECRMALLLENGEPARVD--- 182 Query: 182 RSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEE 241 +GFHG ASV +I GMFAHLE L AI FLNPDNPKKLMPRL+R+FSR LETEE Sbjct: 183 ----HIGFHGDPASVEQINGMFAHLESVLTAIGFLNPDNPKKLMPRLRRLFSRTGLETEE 238 Query: 242 VNILRGIARQILEPKQAK 259 VNILRGIARQ+ KQA+ Sbjct: 239 VNILRGIARQM--EKQAR 254 >ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli BSR3] Length = 258 Score = 271 bits (693), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 142/248 (57%), Positives = 178/248 (71%), Gaps = 11/248 (4%) Query: 7 FSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQ 66 F RFVLV S PGN+G+AARA+KTMGFS+LVLV PR + + + EA+A ASGA DVL Sbjct: 14 FRAARFVLVEPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLADPEAIAMASGADDVLA 73 Query: 67 NARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRD-TGLNAALLFGNERF 125 RIV +++EAL G +++AA++AR RE+ PP ++PR AG+ R G A +FGNER Sbjct: 74 ATRIVATLDEALAGVSWSAALTARSREYGPPRLAPRAAAGEARRQLDGGEIAFVFGNERV 133 Query: 126 GLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPG 185 GL NE V++C+A+ +IPANP+YSSLNLSQA+QVLAYE R+ LE Q Sbjct: 134 GLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELRVALLEGQAAEHHD-------- 185 Query: 186 EVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNIL 245 G G A EIE MFAHLEQALVA++FL+P NPKKLMPRL+R+FSRA LE EEVNIL Sbjct: 186 --GAAGTLAQADEIEKMFAHLEQALVALEFLDPRNPKKLMPRLRRLFSRAGLEREEVNIL 243 Query: 246 RGIARQIL 253 RG+A+ IL Sbjct: 244 RGVAKHIL 251 >gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49] Length = 290 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/250 (57%), Positives = 180/250 (72%), Gaps = 12/250 (4%) Query: 7 FSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQ 66 F+ RFVLV S PGN+G+AARA+KTMGFS LVLV PR P + EA+A ASGA DVL Sbjct: 40 FTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLA 99 Query: 67 NARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGL-NAALLFGNERF 125 +A +V ++ EAL G +++ A++AR RE+ PP ++PR AGQ G + AL+FGNER Sbjct: 100 SAHVVPTLGEALSGVHWSIALTARAREYGPPRLAPRAAAGQACAQVGTGDIALVFGNERT 159 Query: 126 GLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSP- 184 GL NE V++C+AL +IPANP YSSLNL+QAVQVLAYE R+ LE Q + DA+ P Sbjct: 160 GLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLE------QQASDAQQPP 213 Query: 185 -GEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVN 243 GE G QS EIE M+ HLE AL+A+DFL+P NPKKLMPRL+R+F+R LE EEVN Sbjct: 214 AGEAGTLAQS---DEIERMYVHLENALIALDFLDPRNPKKLMPRLRRLFARTGLEREEVN 270 Query: 244 ILRGIARQIL 253 ILRGIA+ +L Sbjct: 271 ILRGIAKHVL 280 >emb|CCA86146.1| putative tRNA/rRNA methyltransferase [Ralstonia syzygii R24] Length = 286 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/252 (57%), Positives = 179/252 (71%), Gaps = 12/252 (4%) Query: 8 SRLRFVLVNTSSPGNIGSAARAIKTMGFSE---LVLVNPRFPDAVKEDEAVAFASGALDV 64 +R RFVLV TS PGN+GS ARA+KTMGF E LV PR PDA +AVA ASGA DV Sbjct: 24 ARCRFVLVETSHPGNVGSTARALKTMGFGEPGGFALVRPREPDAQSHPDAVAMASGADDV 83 Query: 65 LQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSR---DTGLNAALLFG 121 L +AR+V EAL G + A A++AR REF P + PR A +++ G A +FG Sbjct: 84 LASARVVDDFGEALAGVSLAIALTARPREFGPRRIGPRAAAQEVAALLASPGATVAFVFG 143 Query: 122 NERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDA 181 NERFGLPNEVV++C+ + +IPANP Y+SLNLSQAVQ++AYE RM L G +GD Sbjct: 144 NERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTG-----TGDT 198 Query: 182 RSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEE 241 R G VGF G+ A+ +I+GMFAHLE+ALV I FL+P PKKLMPRL+R+F+R QLE EE Sbjct: 199 RVDG-VGFVGEPATAEQIDGMFAHLERALVEIGFLDPAQPKKLMPRLRRLFARTQLEAEE 257 Query: 242 VNILRGIARQIL 253 VNILRGIA+++L Sbjct: 258 VNILRGIAKRML 269