BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0244.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775136.1| proline/glycine betaine ABC transporters per... 414 e-114 ref|YP_004752114.1| proline/glycine betaine ABC transporter perm... 358 3e-97 ref|YP_001774193.1| binding-protein-dependent transport systems ... 328 3e-88 ref|YP_367240.1| ABC glycinebetaine/carnitine/choline transporte... 328 4e-88 ref|YP_002153522.1| putative binding-protein-dependent transport... 327 6e-88 ref|ZP_04943761.1| Binding-protein-dependent transport systems i... 326 1e-87 ref|YP_625579.1| binding-protein-dependent transport systems inn... 326 2e-87 gb|EGD00342.1| ABC glycinebetaine/carnitine/choline transporter,... 324 4e-87 ref|YP_004350196.1| ABC glycine betaine/L-proline transporter, i... 324 7e-87 ref|YP_004022537.1| hypothetical protein RBRH_02812 [Burkholderi... 313 1e-83 >ref|YP_003775136.1| proline/glycine betaine ABC transporters permease [Herbaspirillum seropedicae SmR1] gb|ADJ63228.1| ABC-type proline/glycine betaine transport systems, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV Sbjct: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI Sbjct: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN Sbjct: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK Sbjct: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 >ref|YP_004752114.1| proline/glycine betaine ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61291.1| ABC-type proline/glycine betaine transport systems, permease component [Collimonas fungivorans Ter331] Length = 217 Score = 358 bits (919), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 183/216 (84%), Positives = 200/216 (92%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MN F YL S WP IL LT+QHL LVGIAV LAI IGVPLGI+++R RWLA P+MGLAT+V Sbjct: 1 MNFFDYLLSAWPEILHLTIQHLMLVGIAVGLAILIGVPLGIVMIRHRWLASPMMGLATVV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIPLFS+FG G+GPLPAITAVFLYSLLPIMRNTYLAL+ I+ GIKEAGI Sbjct: 61 LTLPSIALFGLMIPLFSRFGQGLGPLPAITAVFLYSLLPIMRNTYLALDGIDHGIKEAGI 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMTFWQRLR+VDLPL+VPVILGGVRTAVVMNIGVMA+AAIIGAGGLGVLILHAISQSN Sbjct: 121 GIGMTFWQRLRLVDLPLSVPVILGGVRTAVVMNIGVMAVAAIIGAGGLGVLILHAISQSN 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 MQKLVVGAVMISVLAI+AD LLQ LQ++LTPKG+QK Sbjct: 181 MQKLVVGAVMISVLAIVADMLLQVLQRLLTPKGMQK 216 >ref|YP_001774193.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] gb|ACA95698.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] Length = 217 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 169/216 (78%), Positives = 188/216 (87%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MN+F YL S WP +L+LTLQH+ LV IAV AI GVPLGILI R WLAGPL+G+AT+V Sbjct: 1 MNVFDYLASSWPELLQLTLQHVWLVAIAVGCAIVAGVPLGILINRHDWLAGPLLGIATLV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIPLFS+FG GIG PAITAVFLYSLLPIMRNTYLAL N+EAGIKEAG Sbjct: 61 LTLPSIALFGLMIPLFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVEAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+V+LPLAVPVIL GVRTAVVMNIGVM IAA+IGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVELPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >ref|YP_367240.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] gb|ABB06596.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] Length = 217 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 168/216 (77%), Positives = 188/216 (87%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M++F YL S WP +L+LTLQH+ LVGIAV AI GVPLGILI R WLAGPL+G+ATIV Sbjct: 1 MSVFDYLASSWPELLQLTLQHIWLVGIAVGCAIVAGVPLGILINRHDWLAGPLLGIATIV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP FS+FG GIG PAITAVFLYSLLPIMRNTYLAL N++AGIKEAG Sbjct: 61 LTLPSIALFGLMIPFFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVDAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+VDLPLAVPVIL GVRTAVVMNIGVM IAA++GAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVDLPLAVPVILAGVRTAVVMNIGVMTIAAVVGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >ref|YP_002153522.1| putative binding-protein-dependent transport system protein [Burkholderia cenocepacia J2315] emb|CAR57062.1| putative binding-protein-dependent transport system component [Burkholderia cenocepacia J2315] Length = 217 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 168/216 (77%), Positives = 187/216 (86%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 MN+F YL S WP +L+LTLQH+ LV IAV AI GVPLGILI R WLAGPL+G+AT+V Sbjct: 1 MNVFDYLASSWPELLQLTLQHVWLVAIAVGCAIVAGVPLGILINRHDWLAGPLLGIATLV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP FS+FG GIG PAITAVFLYSLLPIMRNTYLAL N++AGIKEAG Sbjct: 61 LTLPSIALFGLMIPFFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVDAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+VDLPLAVPVIL GVRTAVVMNIGVM IAA+IGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVDLPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >ref|ZP_04943761.1| Binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia PC184] gb|EAY66932.1| Binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia PC184] Length = 217 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 168/216 (77%), Positives = 188/216 (87%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M++F YL S WP +L+LTLQH+ LV IAV AI GVPLGILI R WLAGPL+G+AT+V Sbjct: 1 MSVFDYLASSWPELLQLTLQHVWLVAIAVGCAIVAGVPLGILINRHDWLAGPLLGIATLV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIPLFS+FG GIG PAITAVFLYSLLPIMRNTYLAL N+EAGIKEAG Sbjct: 61 LTLPSIALFGLMIPLFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVEAGIKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+V+LPLAVPVIL GVRTAVVMNIGVM IAA+IGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVELPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >ref|YP_625579.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia AU 1054] ref|YP_839726.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia HI2424] gb|ABF80606.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia AU 1054] gb|ABK12833.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia HI2424] Length = 217 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 167/216 (77%), Positives = 188/216 (87%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M++F YL S WP +L+LTLQH+ LV IAV AI GVPLGILI R WLAGPL+G+AT+V Sbjct: 1 MSVFDYLASSWPELLQLTLQHVWLVAIAVGCAIVAGVPLGILINRHDWLAGPLLGIATLV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIPLFS+FG GIG PAITAVFLYSLLPIMRNTYLAL N+EAG+KEAG Sbjct: 61 LTLPSIALFGLMIPLFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALHNVEAGVKEAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+V+LPLAVPVIL GVRTAVVMNIGVM IAA+IGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVELPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++S+LAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSLLAIVADRLLQMLQRALTPKGVQK 216 >gb|EGD00342.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. TJI49] Length = 217 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 169/216 (78%), Positives = 185/216 (85%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M + YL S WP +L+LTLQH+ LVGIAV AI GVPLGILI R WLAGPL+GLATIV Sbjct: 1 MTLSAYLASSWPELLQLTLQHIWLVGIAVGCAIVAGVPLGILINRHEWLAGPLLGLATIV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP FS+FG GIG PAITAVFLYSLLPIMRNTYLAL N+E GI+EAG Sbjct: 61 LTLPSIALFGLMIPFFSRFGQGIGAAPAITAVFLYSLLPIMRNTYLALRNVEPGIREAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+VDLPLAVPVIL GVRTAVVMNIGVM IAA+IGAGGLG LIL AI QS+ Sbjct: 121 GIGMTSWQRLRLVDLPLAVPVILAGVRTAVVMNIGVMTIAAVIGAGGLGTLILRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++SVLAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSVLAIVADLLLQMLQRALTPKGVQK 216 >ref|YP_004350196.1| ABC glycine betaine/L-proline transporter, inner membrane subunit [Burkholderia gladioli BSR3] gb|AEA64684.1| ABC glycine betaine/L-proline transporter, inner membrane subunit [Burkholderia gladioli BSR3] Length = 217 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 166/216 (76%), Positives = 189/216 (87%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M + YL ++WP +L+LTLQH+ LVGIAV AI GVPLGILI R WLA PL+G AT++ Sbjct: 1 MTVHDYLAANWPELLQLTLQHVYLVGIAVGCAILAGVPLGILISRHEWLAPPLLGAATVI 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIP+FS+FG GIG +PAITAVFLYSLLPIMRNTYLAL N++AGIKEAGI Sbjct: 61 LTLPSIALFGLMIPVFSRFGQGIGAVPAITAVFLYSLLPIMRNTYLALRNVDAGIKEAGI 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+VDLPLAVPVILGGVRTAVVMNIGVM IAA+IGAGGLG LI+ AI QS+ Sbjct: 121 GIGMTSWQRLRLVDLPLAVPVILGGVRTAVVMNIGVMTIAAVIGAGGLGTLIVRAIGQSS 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M KL+VGAV++SVLAI+AD LLQ LQ+ LTPKGVQK Sbjct: 181 MMKLLVGAVLVSVLAIVADLLLQWLQRALTPKGVQK 216 >ref|YP_004022537.1| hypothetical protein RBRH_02812 [Burkholderia rhizoxinica HKI 454] emb|CBW77018.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 217 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 159/216 (73%), Positives = 182/216 (84%) Query: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60 M++ Y ++W + LTLQHL LVG AV AI +GVPLGILI R WLAGPL+G ATIV Sbjct: 1 MDLMNYFSNNWQELASLTLQHLALVGTAVGCAILVGVPLGILINRCAWLAGPLLGCATIV 60 Query: 61 LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120 LTLPSIALFGLMIPL S++GAGIGP PAI AVFLYSLLPIMRNTYLAL N++ I+EAG Sbjct: 61 LTLPSIALFGLMIPLLSRWGAGIGPAPAIVAVFLYSLLPIMRNTYLALRNVDPSIREAGT 120 Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180 GIGMT WQRLR+V+LPLAVPVI+GGVRTAVVMNIGVM IAA+IGAGGLG L+L AISQSN Sbjct: 121 GIGMTRWQRLRLVELPLAVPVIIGGVRTAVVMNIGVMTIAAVIGAGGLGELVLRAISQSN 180 Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216 M +LV+GAV++SVLAI+AD LL LQ+ LTPKGV K Sbjct: 181 MTRLVIGAVLVSVLAIVADLLLHALQRALTPKGVAK 216