BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0242.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775134.1| proline/glycine betaine ABC transporter perm... 396 e-108 ref|YP_004752112.1| ABC glycine betaine/choline/proline family t... 302 3e-80 ref|YP_004350198.1| Amino acid ABC transporter, permease protein... 268 3e-70 ref|YP_552351.1| glycine betaine/choline/proline ABC transporter... 253 2e-65 ref|YP_002153524.1| putative binding-protein-dependent transport... 252 4e-65 ref|YP_367238.1| ABC glycinebetaine/carnitine/choline transporte... 251 6e-65 ref|YP_625577.1| binding-protein-dependent transport systems inn... 250 1e-64 ref|YP_001774191.1| binding-protein-dependent transport systems ... 249 3e-64 ref|ZP_04943763.1| amino acid ABC transporter, permease protein ... 248 5e-64 ref|YP_002909295.1| amino acid ABC transporter permease [Burkhol... 243 1e-62 >ref|YP_003775134.1| proline/glycine betaine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63226.1| ABC-type proline/glycine betaine transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 226/237 (95%), Positives = 226/237 (95%) Query: 1 MTRVRHVFASALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60 MTRVRHVFA ALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI Sbjct: 1 MTRVRHVFAGALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60 Query: 61 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLPI 120 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLA A A TILALWLASLLPI Sbjct: 61 PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAFFGIGNGPTILALWLASLLPI 120 Query: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS Sbjct: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180 Query: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT 237 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT Sbjct: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT 237 >ref|YP_004752112.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Collimonas fungivorans Ter331] gb|AEK61289.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Collimonas fungivorans Ter331] Length = 276 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 169/234 (72%), Positives = 188/234 (80%) Query: 2 TRVRHVFASALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIP 61 R R+ A LV+A + W IGP VI +Y+GDLIYYTG+HL LV SM LAL GIP Sbjct: 41 NRYRNAMIGAAVTLLVVAAIGWSIGPAVIHQYQGDLIYYTGRHLVLVGWSMSLALLCGIP 100 Query: 62 AGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLPIV 121 AGI LSRP R AEK++QIFNIGNTIPS+AVLA A A + ILALWLASLLPIV Sbjct: 101 AGILLSRPYFSRHAEKWMQIFNIGNTIPSMAVLALALALFGIGDKPAILALWLASLLPIV 160 Query: 122 RNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSM 181 RNTYEGLK V AMKEAA+GIGMKP Q+L RVELPNALPIIVGGVRTALAINVGTAPLS+ Sbjct: 161 RNTYEGLKQVSPAMKEAAKGIGMKPLQVLFRVELPNALPIIVGGVRTALAINVGTAPLSI 220 Query: 182 LIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGL 235 LIGGESLGGLIFPGIYLNNHGQLLLGA ATA+LAL+LDA+V+ S YL++RGL Sbjct: 221 LIGGESLGGLIFPGIYLNNHGQLLLGATATAVLALMLDAIVSLGSNAYLSKRGL 274 >ref|YP_004350198.1| Amino acid ABC transporter, permease protein [Burkholderia gladioli BSR3] gb|AEA64686.1| Amino acid ABC transporter, permease protein [Burkholderia gladioli BSR3] Length = 238 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/235 (62%), Positives = 180/235 (76%), Gaps = 1/235 (0%) Query: 1 MTRVRHVFASALGFALVLAG-LVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATG 59 MTR A +L A++L G + IG D +++ GDL+YYTG+HL LV SM+LA+A G Sbjct: 1 MTRRTVRLAGSLLLAVILFGWIASAIGADTWRQHSGDLVYYTGRHLMLVGCSMVLAIAVG 60 Query: 60 IPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLP 119 IPAG+ALSRP R AE+F+Q+FNIGNT+PS+AVLA A I+AL+LASLLP Sbjct: 61 IPAGVALSRPALARQAERFMQVFNIGNTVPSLAVLAIALGIFGIGDMPAIVALFLASLLP 120 Query: 120 IVRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPL 179 I RN YEG++NVPA+++EAARGIGM P Q L RVELPNALPIIVGGVRTALAINVGTAPL Sbjct: 121 ITRNAYEGMRNVPASLREAARGIGMTPWQSLTRVELPNALPIIVGGVRTALAINVGTAPL 180 Query: 180 SMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRG 234 + LIG +SLG LIFPGIYL+N LLLGAA+TA+LAL+LDA+V A S +AR G Sbjct: 181 AYLIGADSLGTLIFPGIYLDNQQMLLLGAASTAVLALLLDAIVAAGSRHVMARNG 235 >ref|YP_552351.1| glycine betaine/choline/proline ABC transporter inner membrane protein [Burkholderia xenovorans LB400] gb|ABE33001.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Burkholderia xenovorans LB400] Length = 238 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 162/206 (78%) Query: 30 IQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNIGNTIP 89 + +Y DL+YYT +HL LV SM LAL GIPAG+ LSRP R AE+F+QIFNIGNTIP Sbjct: 31 LHQYTPDLVYYTKRHLLLVGYSMALALLVGIPAGVLLSRPSFARHAERFMQIFNIGNTIP 90 Query: 90 SIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQI 149 S+AVLA A ++AL+LASLLPI RN YEG+KNV A++EAARG+GM Q Sbjct: 91 SLAVLAIALGIFGIGDIPALIALFLASLLPITRNAYEGMKNVSPALREAARGLGMTGWQS 150 Query: 150 LLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGAA 209 LLRVELPNA+PII+GGVRTALAINVG+APL+ LIG +SLG LIFPGIYLNN QLLLGAA Sbjct: 151 LLRVELPNAMPIIIGGVRTALAINVGSAPLAYLIGADSLGTLIFPGIYLNNQQQLLLGAA 210 Query: 210 ATALLALVLDALVTALSGFYLARRGL 235 ATA+LALVLD +V+A S + LARRG+ Sbjct: 211 ATAILALVLDGIVSAGSRYLLARRGV 236 >ref|YP_002153524.1| putative binding-protein-dependent transport system protein [Burkholderia cenocepacia J2315] emb|CAR57064.1| putative binding-protein-dependent transport system component [Burkholderia cenocepacia J2315] Length = 238 Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 135/210 (64%), Positives = 162/210 (77%) Query: 25 IGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84 IG + ++ DL YY G+H+ LV SM LA+A G+PAG+ LSRP QR AE+F+Q+FNI Sbjct: 26 IGAETFKQRSDDLAYYAGQHMLLVVYSMTLAIAVGVPAGVLLSRPRFQRQAERFMQVFNI 85 Query: 85 GNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGM 144 GNTIPS+AVLA A I+AL+LASLLP+ RN YEG+KNVPAA++EAA+GIGM Sbjct: 86 GNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPVTRNAYEGMKNVPAALREAAKGIGM 145 Query: 145 KPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQL 204 Q L+RVELPNALPIIVGGVRTALAINVGTAPL+ LIG +SLG LIFPGIYL+N L Sbjct: 146 TGWQSLVRVELPNALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDNQPLL 205 Query: 205 LLGAAATALLALVLDALVTALSGFYLARRG 234 LLGA+ TA+LALVLD +V A S +LAR G Sbjct: 206 LLGASLTAILALVLDGIVAAGSRHWLARHG 235 >ref|YP_367238.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] gb|ABB06594.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] Length = 238 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 136/210 (64%), Positives = 161/210 (76%) Query: 25 IGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84 IG D + DL YY G+H+ LV SM LA+A G+PAG+ LSRP Q AE+F+Q+FNI Sbjct: 26 IGADTFSQRADDLAYYAGQHMLLVVYSMALAIAVGVPAGVLLSRPRFQHQAERFMQVFNI 85 Query: 85 GNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGM 144 GNTIPS+AVLA A I+AL+LASLLPI RNTYEG+KNVPAA++EAA+GIGM Sbjct: 86 GNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPITRNTYEGMKNVPAALREAAKGIGM 145 Query: 145 KPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQL 204 Q L+RVELP+ALPIIVGGVRTALAINVGTAPL+ LIG +SLG LIFPGIYL+N L Sbjct: 146 TGWQSLVRVELPDALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDNQPLL 205 Query: 205 LLGAAATALLALVLDALVTALSGFYLARRG 234 LLGA+ TA+LALVLD +V A S +LAR G Sbjct: 206 LLGASLTAILALVLDGIVAAGSRHWLARHG 235 >ref|YP_625577.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia AU 1054] ref|YP_839724.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia HI2424] gb|ABF80604.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia AU 1054] gb|ABK12831.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia HI2424] Length = 238 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/210 (64%), Positives = 160/210 (76%) Query: 25 IGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84 IG + + DL YY G+H+ LV SM LA+A G+PAG+ LSRP Q AE+F+Q+FNI Sbjct: 26 IGAETFHQRADDLAYYAGQHMLLVVYSMTLAIAVGVPAGVLLSRPRFQHQAERFMQVFNI 85 Query: 85 GNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGM 144 GNTIPS+AVLA A I+AL+LASLLP+ RN YEG+KNVPAA++EAA+GIGM Sbjct: 86 GNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPVTRNAYEGMKNVPAALREAAKGIGM 145 Query: 145 KPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQL 204 Q LLRVELPNALPIIVGGVRTALAINVGTAPL+ LIG +SLG LIFPGIYL+N L Sbjct: 146 TGWQSLLRVELPNALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDNQPLL 205 Query: 205 LLGAAATALLALVLDALVTALSGFYLARRG 234 LLGA+ TA+LALVLD +V A S +LAR G Sbjct: 206 LLGASLTAILALVLDGIVAAGSRHWLARHG 235 >ref|YP_001774191.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] gb|ACA95696.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] Length = 238 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 160/210 (76%) Query: 25 IGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84 IG + + DL YY G+H+ LV SM LA+A G+PAG+ LSRP Q AE+F+Q+FNI Sbjct: 26 IGAETFHQRADDLAYYAGQHMLLVVYSMTLAIAVGVPAGVLLSRPRFQHQAERFMQVFNI 85 Query: 85 GNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGM 144 GNTIPS+AVLA A I+AL+LASLLP+ RN YEG+KNVPAA++EAA+GIGM Sbjct: 86 GNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPVTRNAYEGMKNVPAALREAAKGIGM 145 Query: 145 KPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQL 204 Q L+RVELPNALPIIVGGVRTALAINVGTAPL+ LIG +SLG LIFPGIYL+N L Sbjct: 146 TGWQSLVRVELPNALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDNQPLL 205 Query: 205 LLGAAATALLALVLDALVTALSGFYLARRG 234 LLGA+ TA+LALVLD +V A S +LAR G Sbjct: 206 LLGASLTAILALVLDGIVAAGSRHWLARHG 235 >ref|ZP_04943763.1| amino acid ABC transporter, permease protein [Burkholderia cenocepacia PC184] gb|EAY66934.1| amino acid ABC transporter, permease protein [Burkholderia cenocepacia PC184] Length = 323 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 160/210 (76%) Query: 25 IGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84 IG + + DL YY G+H+ LV SM LA+A G+PAG+ LSRP Q AE+F+Q+FNI Sbjct: 111 IGAETFHQRADDLAYYAGQHMLLVVYSMTLAIAVGVPAGVLLSRPRFQHQAERFMQVFNI 170 Query: 85 GNTIPSIAVLARARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGM 144 GNTIPS+AVLA A I+AL+LASLLP+ RN YEG+KNVPAA++EAA+GIGM Sbjct: 171 GNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPVTRNAYEGMKNVPAALREAAKGIGM 230 Query: 145 KPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQL 204 Q L+RVELPNALPIIVGGVRTALAINVGTAPL+ LIG +SLG LIFPGIYL+N L Sbjct: 231 TGWQSLVRVELPNALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDNQPLL 290 Query: 205 LLGAAATALLALVLDALVTALSGFYLARRG 234 LLGA+ TA+LALVLD +V A S +LAR G Sbjct: 291 LLGASLTAILALVLDGIVAAGSRHWLARHG 320 >ref|YP_002909295.1| amino acid ABC transporter permease [Burkholderia glumae BGR1] gb|ACR32060.1| amino acid ABC transporter permease [Burkholderia glumae BGR1] Length = 238 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 149/235 (63%), Positives = 179/235 (76%), Gaps = 1/235 (0%) Query: 1 MTRVRHVFASALGFALVLAGLVWW-IGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATG 59 MTR A +L A+++ G + IG D ++Y GDL+YYTG+HL LV SM LA+ G Sbjct: 1 MTRRTVRIAGSLLLAIIVLGWIAQAIGADTWRQYSGDLVYYTGRHLMLVGYSMALAILVG 60 Query: 60 IPAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLP 119 IPAG+ALSRP A R AE+F+Q+FNIGNT+PS+AVLA A I+AL+LASLLP Sbjct: 61 IPAGVALSRPSAARHAERFMQVFNIGNTVPSLAVLAIALGIFGIGEAPAIVALFLASLLP 120 Query: 120 IVRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPL 179 I RN YEG++NVPAA++EAARGIGM P Q L+RVELPNALPII+GGVRTALAINVGTAPL Sbjct: 121 ITRNAYEGMRNVPAALREAARGIGMTPWQSLVRVELPNALPIIIGGVRTALAINVGTAPL 180 Query: 180 SMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRG 234 + LIG +SLG LIFPGIYL+N LLLGAAATA+LAL+LD +V A S LAR G Sbjct: 181 AYLIGADSLGTLIFPGIYLDNQQMLLLGAAATAVLALLLDGIVAAGSRHVLARNG 235