BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0238.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775131.1| GGDEF family protein [Herbaspirillum seroped... 387 e-106 ref|YP_003775115.1| GGDEF family protein [Herbaspirillum seroped... 202 2e-50 ref|YP_004190353.1| GGDEF domain-containing protein [Vibrio vuln... 138 5e-31 ref|NP_936211.1| GGDEF family protein [Vibrio vulnificus YJ016] ... 137 8e-31 ref|NP_763217.1| GGDEF domain-containing protein [Vibrio vulnifi... 137 8e-31 ref|YP_943086.1| bifunctional adenylate cyclase/hybrid sensor di... 134 5e-30 ref|YP_003909087.1| DNA-binding domain-containing protein, excis... 134 7e-30 ref|YP_003692473.1| GAF sensor protein [Starkeya novella DSM 506... 132 2e-29 ref|YP_003775111.1| GAF domain-containing protein [Herbaspirillu... 131 4e-29 gb|EGS73589.1| diguanylate cyclase domain protein [Vibrio choler... 131 5e-29 >ref|YP_003775131.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63223.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MSLLGHNGAKQSGPAAVQPAAVAQTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLA 60 MSLLGHNGAKQSGPAAVQPAAVAQTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLA Sbjct: 62 MSLLGHNGAKQSGPAAVQPAAVAQTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLA 121 Query: 61 SELLEVPIALVTFQTAELQIFHAAHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARF 120 SELLEVPIALVTFQTAELQIFHAAHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARF Sbjct: 122 SELLEVPIALVTFQTAELQIFHAAHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARF 181 Query: 121 ANNPMVTSAPFIRFYAAVPLMYQGKAFGSLCIIDTEARLLRSQERRALQELAALATDMMA 180 ANNPMVTSAPFIRFYAAVPLMYQGKAFGSLCIIDTEARLLRSQERRALQELAALATDMMA Sbjct: 182 ANNPMVTSAPFIRFYAAVPLMYQGKAFGSLCIIDTEARLLRSQERRALQELAALATDMMA 241 Query: 181 LQLMELQQH 189 LQLMELQQH Sbjct: 242 LQLMELQQH 250 >ref|YP_003775115.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63207.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/189 (51%), Positives = 130/189 (68%), Gaps = 9/189 (4%) Query: 1 MSLLGHNG----AKQSGPAAVQPAAVAQTPEAASTDEARQAPLMAQAKTGTQAEARFHRL 56 MSL+GH ++ GP ++ A A +E +A + + + + RF RL Sbjct: 51 MSLIGHQEVPAVGEEDGPEELEALAYP-----AGAEEGDRAAFVERIIERSAPDTRFDRL 105 Query: 57 TWLASELLEVPIALVTFQTAELQIFHAAHGLNIAATPRSWAFCNYADMDEDVFTVADASK 116 TWLASELL+ PI+L+TF T+ELQIF +AHGL++ TPR+WAFCNY E VF V+D Sbjct: 106 TWLASELLDAPISLITFLTSELQIFKSAHGLSLNETPRAWAFCNYTIAHEGVFAVSDTQT 165 Query: 117 DARFANNPMVTSAPFIRFYAAVPLMYQGKAFGSLCIIDTEARLLRSQERRALQELAALAT 176 D RF NNP+VTS PF RFYA V LMY+GKAFGSLC+IDTE R+LRS E++AL+ELA LA+ Sbjct: 166 DMRFMNNPLVTSTPFFRFYAGVRLMYEGKAFGSLCVIDTEPRILRSHEQQALEELAMLAS 225 Query: 177 DMMALQLME 185 D++ L ++E Sbjct: 226 DILRLHILE 234 >ref|YP_004190353.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gb|ADV88150.1| GGDEF domain [Vibrio vulnificus MO6-24/O] Length = 322 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 24 QTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLASELLEVPIALVTFQTAELQIFHA 83 QTP+ + R A L + T AE RF R+T +A L +VPIALV+ + Q F + Sbjct: 2 QTPKKPDNEPQRIADLHSLNILDTAAEERFDRVTRIARRLFDVPIALVSLVDEDRQWFKS 61 Query: 84 AHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFIRFYAAVPLMYQ 143 GL+++ TPR +FC +A + D V DAS+DARFA+NP+VT P IRFYA VPLM++ Sbjct: 62 CFGLDVSETPRDISFCGHAILGADTLIVEDASQDARFADNPLVTGEPHIRFYAGVPLMFE 121 Query: 144 -GKAFGSLCIIDTEARLLRSQERRALQELAALA 175 G+LCIIDT+ R L ER L +LA +A Sbjct: 122 HSSCLGTLCIIDTKPRTLNDDERLDLIDLAKMA 154 >ref|NP_936211.1| GGDEF family protein [Vibrio vulnificus YJ016] dbj|BAC96181.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 322 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 24 QTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLASELLEVPIALVTFQTAELQIFHA 83 QTP+ + R A L + T AE RF R+T +A L +VPIALV+ + Q F + Sbjct: 2 QTPKKPDNEPQRIADLHSLNILDTAAEERFDRVTRIARRLFDVPIALVSLVDEDRQWFKS 61 Query: 84 AHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFIRFYAAVPLMYQ 143 GLN + TPR +FC +A + D V DAS+DARFA+NP+VT P IRFYA VPLM++ Sbjct: 62 CFGLNASETPRDISFCGHAILGADTLIVEDASQDARFADNPLVTGEPHIRFYAGVPLMFE 121 Query: 144 -GKAFGSLCIIDTEARLLRSQERRALQELAALA 175 G+LCIIDT+ R L ER L +LA +A Sbjct: 122 HSSCLGTLCIIDTKPRTLNEDERLDLIDLAKMA 154 >ref|NP_763217.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gb|AAO08207.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6] Length = 322 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 24 QTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLASELLEVPIALVTFQTAELQIFHA 83 QTP+ + R A L + T AE RF R+T +A L +VPIALV+ + Q F + Sbjct: 2 QTPKKPDNEPQRIADLHSLNILDTAAEERFDRVTRIARRLFDVPIALVSLVDEDRQWFKS 61 Query: 84 AHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFIRFYAAVPLMYQ 143 GLN + TPR +FC +A + D V DAS+DARFA+NP+VT P IRFYA VPLM++ Sbjct: 62 CFGLNASETPRDISFCGHAILGADTLIVEDASQDARFADNPLVTGEPHIRFYAGVPLMFE 121 Query: 144 -GKAFGSLCIIDTEARLLRSQERRALQELAALA 175 G+LCIIDT+ R L ER L +LA +A Sbjct: 122 HSSCLGTLCIIDTKPRTLNEDERLDLIDLAKMA 154 >ref|YP_943086.1| bifunctional adenylate cyclase/hybrid sensor diguanylate cyclase/response regulator [Psychromonas ingrahamii 37] gb|ABM03487.1| diguanylate cyclase with GAF sensor [Psychromonas ingrahamii 37] Length = 316 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 24 QTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLASELLEVPIALVTFQTAELQIFHA 83 + P+ + R L + T +E RF RLT LA + +VPIALV+ Q F + Sbjct: 2 KKPDIPQDEGGRLKALRSLDVLDTPSEERFDRLTRLAKRMFDVPIALVSLVDENRQWFKS 61 Query: 84 AHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFIRFYAAVPLMY- 142 G+N++ PR +FC +A ++ ++F + D KD RF++NP+V + P+IRFYA PL Y Sbjct: 62 CTGINVSEIPRDISFCGHAILENEIFIIPDTIKDERFSDNPLVLNEPYIRFYAGCPLRYL 121 Query: 143 QGKAFGSLCIIDTEARLLRSQERRALQELAALAT-DMMALQL 183 G G+LCIIDT+ R+L ++ AL++LA LA ++MA+QL Sbjct: 122 DGSTLGTLCIIDTQPRVLDEEDLDALKDLAELAEHELMAVQL 163 >ref|YP_003909087.1| DNA-binding domain-containing protein, excisionase family [Burkholderia sp. CCGE1003] gb|ADN59796.1| DNA binding domain protein, excisionase family [Burkholderia sp. CCGE1003] Length = 376 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 1/174 (0%) Query: 13 GPAAVQPAAVAQTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLASELLEVPIALVT 72 G +PA + + A+ + R + A + AE F +T LA+ +LE PIAL+T Sbjct: 184 GGPLTRPALEPLSGDPAANEAQRLIAVAASGLVDSPAEESFDEITRLAATILEAPIALLT 243 Query: 73 FQTAELQIFHAAHGLNIAATPRSWAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFI 132 T + Q F + GL A TPRSWAFCN+ + + VF V DA+ D RFA+NP+VT P I Sbjct: 244 LLTPDRQWFKSRWGLEAAETPRSWAFCNFTILQDGVFVVEDATIDLRFASNPLVTGDPHI 303 Query: 133 RFYAAVPLM-YQGKAFGSLCIIDTEARLLRSQERRALQELAALATDMMALQLME 185 RFYA V + QG GSLC+ID R L +R AL L LA+D + L++ME Sbjct: 304 RFYAGVNICDVQGYRLGSLCVIDRTPRRLLDSQRDALTTLGRLASDHINLRVME 357 >ref|YP_003692473.1| GAF sensor protein [Starkeya novella DSM 506] gb|ADH87854.1| putative GAF sensor protein [Starkeya novella DSM 506] Length = 378 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 4/153 (2%) Query: 39 LMAQAKTG---TQAEARFHRLTWLASELLEVPIALVTFQTAELQIFHAAHGLNIAATPRS 95 L+A ++G T E F RLTWLA+ L+ PIAL+T T Q F + GL++ TPRS Sbjct: 199 LVALERSGLLDTAPEEAFDRLTWLAARNLDAPIALLTLLTPTRQWFKSRFGLDLPETPRS 258 Query: 96 WAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFIRFYAAVPLM-YQGKAFGSLCIID 154 WAFCN+ + + VF+V D S+D RFA NP V P RFYA P+M +G GSLC+ID Sbjct: 259 WAFCNHTILQKGVFSVEDLSRDPRFAKNPAVQGQPLFRFYAGAPVMDNEGFTVGSLCVID 318 Query: 155 TEARLLRSQERRALQELAALATDMMALQLMELQ 187 + R L +E + L LAALA+D + L+ ++ Q Sbjct: 319 YKPRKLDEREAQTLMALAALASDEVRLRAIDRQ 351 >ref|YP_003775111.1| GAF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63203.1| GAF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 144 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 1/143 (0%) Query: 48 QAEARFHRLTWLASELLEVPIALVTFQTAELQIFHAAHGLNIAATPRSWAFCNYADMDED 107 Q+E RF RL WLASELL+VP++L+ +E I+H GL++ T R AF + + E Sbjct: 2 QSEERFRRLNWLASELLDVPMSLIGLVASETVIWHGPVGLHVEETTRPCAFVEHTLLHEG 61 Query: 108 VFTVADASKDARFANNPMVTSAPFIRFYAAVPL-MYQGKAFGSLCIIDTEARLLRSQERR 166 VF V DASKD RF+++ +VT APF+R +A + L + G FG+LC++DTE R+ R++E R Sbjct: 62 VFLVPDASKDPRFSDHSLVTGAPFVRCFAGMRLRLNNGVVFGALCVMDTEPRIFRAREIR 121 Query: 167 ALQELAALATDMMALQLMELQQH 189 + LA +A D+ L L E Q H Sbjct: 122 TFEGLAQIAEDIYRLFLFERQSH 144 >gb|EGS73589.1| diguanylate cyclase domain protein [Vibrio cholerae BJG-01] Length = 324 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 25 TPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWLASELLEVPIALVTFQTAELQIFHAA 84 +PE + R L A T AE RF R+T LA L VPIAL++ Q F + Sbjct: 3 SPEKPDNEVQRLRHLNTLAILDTAAEERFDRITRLARRLFNVPIALISLVDENRQWFKSC 62 Query: 85 HGLNIAATPRSWAFCNYADMDEDVFTVADASKDARFANNPMVTSAPFIRFYAAVPLMYQG 144 +GLN++ T R +FC +A + + VF + DAS+D RFA+NP+VT AP IRFYA VPL+Y+ Sbjct: 63 YGLNVSETSRDISFCGHAILGKKVFVIEDASQDPRFADNPLVTDAPNIRFYAGVPLLYED 122 Query: 145 K-AFGSLCIIDTEARLLRSQERRALQELAALA 175 A G+LCIIDT+ R L E +LA +A Sbjct: 123 SLALGTLCIIDTKPRQLTQDELLDFYDLAKMA 154