BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0233.p (126 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775126.1| chemotaxis response regulator protein [Herba... 254 2e-66 ref|YP_003444416.1| response regulator receiver protein [Allochr... 187 5e-46 ref|ZP_08822979.1| response regulator receiver protein [Thiorhod... 186 1e-45 ref|ZP_08274625.1| Chemotaxis regulator - transmits chemorecepto... 182 1e-44 ref|YP_002909545.1| response regulator receiver protein [Burkhol... 179 9e-44 ref|ZP_08781145.1| response regulator receiver protein [Methylob... 162 1e-38 ref|ZP_08402542.1| response regulator receiver protein [Rubriviv... 162 2e-38 ref|YP_427417.1| response regulator receiver domain-containing p... 150 8e-35 ref|YP_003168626.1| response regulator receiver protein [Candida... 149 2e-34 ref|YP_001361603.1| response regulator receiver protein [Kineoco... 147 6e-34 >ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63218.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%) Query: 1 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP 60 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP Sbjct: 1 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP 60 Query: 61 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR Sbjct: 61 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 Query: 121 QVLPGV 126 QVLPGV Sbjct: 121 QVLPGV 126 >ref|YP_003444416.1| response regulator receiver protein [Allochromatium vinosum DSM 180] gb|ADC63384.1| response regulator receiver protein [Allochromatium vinosum DSM 180] Length = 124 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 86/122 (70%), Positives = 105/122 (86%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 SK+I +VDDSATM+MS+++ LEMAGF V+TA DGV+AL K+++G KPDL+ITDINMPNM Sbjct: 2 SKTILVVDDSATMVMSLKASLEMAGFKVETAGDGVQALTKLKSGVKPDLIITDINMPNMG 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G++ IRN R LPG RF PIL LTTESQ KRDE KK GATGWLVKPVGG+DL+K+++QVL Sbjct: 62 GMDFIRNARVLPGLRFTPILALTTESQQAKRDEAKKLGATGWLVKPVGGSDLIKVIKQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >ref|ZP_08822979.1| response regulator receiver protein [Thiorhodococcus drewsii AZ1] gb|EGV31908.1| response regulator receiver protein [Thiorhodococcus drewsii AZ1] Length = 124 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/122 (69%), Positives = 104/122 (85%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 SK I +VDDSATM+MS+++ LEMAGF V+TA DGV+A+ K++ G KPDL++TDINMPNM+ Sbjct: 2 SKVILVVDDSATMVMSLKASLEMAGFKVETAGDGVQAMTKLKGGVKPDLILTDINMPNMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G++ IRN R LPG RF PIL LTTESQ KRDE KK GATGWLVKPVGGADL+K+++QVL Sbjct: 62 GIDFIRNARTLPGMRFTPILALTTESQQAKRDEAKKLGATGWLVKPVGGADLIKVIKQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >ref|ZP_08274625.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Oxalobacteraceae bacterium IMCC9480] gb|EGF31910.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Oxalobacteraceae bacterium IMCC9480] Length = 124 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/122 (72%), Positives = 102/122 (83%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 +K+I +VDDSATMLMS+++ LE+ GF V TA DGV AL K+Q G KPDL+ITDINMPNM Sbjct: 2 AKTILVVDDSATMLMSLKNSLEITGFIVITAADGVIALGKLQKGPKPDLIITDINMPNMG 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+E I RALPGFRFIPIL LTTESQ +RDE KK GATGWLVKPVGGADL+KI++QVL Sbjct: 62 GIEFIGKARALPGFRFIPILALTTESQQARRDEAKKLGATGWLVKPVGGADLIKIIKQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >ref|YP_002909545.1| response regulator receiver protein [Burkholderia glumae BGR1] gb|ACR32310.1| Response regulator receiver protein [Burkholderia glumae BGR1] Length = 125 Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 86/124 (69%), Positives = 102/124 (82%), Gaps = 1/124 (0%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAG-FAVDTAEDGVKALKKMQAGYKPDLLITDINMPNM 62 SKSI LVDDS TMLMS+R LEMAG +V+TA DGV+ALK++++G +PDL+ITDINMPNM Sbjct: 2 SKSILLVDDSVTMLMSLRGSLEMAGGLSVETASDGVQALKRLRSGPRPDLIITDINMPNM 61 Query: 63 DGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQV 122 DGLELIR R LPG RF P+L LTTESQ +RDE K GATGWLVKPV A LL++++QV Sbjct: 62 DGLELIRQARQLPGLRFTPLLVLTTESQQARRDEAKALGATGWLVKPVATAALLQVIKQV 121 Query: 123 LPGV 126 LPGV Sbjct: 122 LPGV 125 >ref|ZP_08781145.1| response regulator receiver protein [Methylobacter tundripaludum SV96] gb|EGW23320.1| response regulator receiver protein [Methylobacter tundripaludum SV96] Length = 124 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/122 (61%), Positives = 98/122 (80%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 +K+I +VDDSA + SV HL+ GF V+TA+DG+ AL ++AG KPDL+ITDINMPNM+ Sbjct: 2 AKTILVVDDSALIRTSVTQHLKNGGFTVETADDGLNALNMLKAGLKPDLMITDINMPNMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+ELI++ RALP FRF+PIL +TTESQ RDE K+ GATGW+VKPVGG L+ I+++VL Sbjct: 62 GIELIQSTRALPEFRFMPILVMTTESQQTMRDEAKQLGATGWVVKPVGGELLMSIIKKVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >ref|ZP_08402542.1| response regulator receiver protein [Rubrivivax benzoatilyticus JA2] gb|EGJ10875.1| response regulator receiver protein [Rubrivivax benzoatilyticus JA2] Length = 121 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 78/121 (64%), Positives = 97/121 (80%), Gaps = 2/121 (1%) Query: 5 KSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDG 64 K +FLVDDSATMLMS++ LE++GF V+TA DG AL K++AG +PDL+ITDINMP +DG Sbjct: 2 KCVFLVDDSATMLMSLKGTLEISGFRVETAADGEAALGKLRAGLRPDLIITDINMPRLDG 61 Query: 65 LELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVLP 124 + LIR R L RF PIL LTTESQ KR+E KK GATGWLVKP+GG +L+K+++QVLP Sbjct: 62 IGLIREARKL--LRFTPILALTTESQLAKREEAKKNGATGWLVKPLGGGELVKVIKQVLP 119 Query: 125 G 125 G Sbjct: 120 G 120 >ref|YP_427417.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum ATCC 11170] gb|ABC23130.1| Response regulator receiver domain protein (CheY) [Rhodospirillum rubrum ATCC 11170] gb|AEO48860.1| response regulator receiver domain-containing protein [Rhodospirillum rubrum F11] Length = 124 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 71/122 (58%), Positives = 92/122 (75%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 + +IFLVDDSAT+LMS+ + L AGF + A G AL +++ G KP L+ITDI+MP M+ Sbjct: 2 TSTIFLVDDSATVLMSMETILRRAGFTIAQASSGEDALAQLEKGLKPALIITDIHMPGMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G++LIR VR + GF+FIPIL +TTESQ KRDE + A ATGWLVKPV DLLK+V+Q+L Sbjct: 62 GIDLIRKVRTMAGFQFIPILVVTTESQQSKRDEARAAKATGWLVKPVQPDDLLKVVKQIL 121 Query: 124 PG 125 P Sbjct: 122 PN 123 >ref|YP_003168626.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV36697.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 122 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 92/120 (76%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 +K+IFLVDDSAT+L+SV S L AGFAV+ A + +ALKK AG K DLLITD+NMP M+ Sbjct: 2 AKTIFLVDDSATILLSVSSILGKAGFAVEKAANAEEALKKFSAGVKVDLLITDLNMPGMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+ELI+ VRALP +RF+PIL LTTESQ ++ E K AGA+GW+VKP DLL ++ V+ Sbjct: 62 GIELIKKVRALPAYRFLPILFLTTESQQSRKVEAKAAGASGWIVKPATADDLLNTIKLVI 121 >ref|YP_001361603.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] gb|ABS03339.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] Length = 122 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 69/120 (57%), Positives = 91/120 (75%), Gaps = 1/120 (0%) Query: 6 SIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGL 65 ++ LVDDS TMLMS++S L G AV+TA DG +AL+++Q+G+KPDL+I+D+NMP +DG+ Sbjct: 3 TVMLVDDSPTMLMSIKSILTKQGLAVETAADGQEALERVQSGFKPDLVISDVNMPRLDGI 62 Query: 66 ELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVLPG 125 +R R G RF PIL LTTES+ KRDE K AGATGWLVKPV L+ ++RQV+PG Sbjct: 63 GFVRQARR-AGLRFTPILMLTTESEQTKRDEAKAAGATGWLVKPVQADALMTVIRQVVPG 121