BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0208.p         (61 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775104.1| methyl-accepting chemotaxis transducer trans...   110   8e-23

>ref|YP_003775104.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63196.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 550

 Score =  110 bits (275), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 3   LVEQSAAAAESLSAQASKLLDLMGAFKLAGREEQALHAAPAVAPAPLRVLAAAPAIALR 61
           LVEQSAAAAESLSAQASKLLDLMGAFKLAGREEQALHAAPAVAPAPLRVLAAAPAIALR
Sbjct: 492 LVEQSAAAAESLSAQASKLLDLMGAFKLAGREEQALHAAPAVAPAPLRVLAAAPAIALR 550