BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0191.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775085.1| branched-chain amino acid ABC transporter pe... 174 3e-41 ref|YP_727074.1| leucine/isoleucine/valine transporter permease ... 110 6e-22 ref|YP_002006123.1| leucine/isoleucine/valine transporter permea... 107 4e-21 ref|YP_296523.1| leucine/isoleucine/valine transporter permease ... 105 1e-20 ref|YP_584624.1| leucine/isoleucine/valine transporter permease ... 104 3e-20 ref|YP_004686306.1| HAAT family ABC transporter permease [Cupria... 103 5e-20 ref|ZP_03573463.1| high-affinity branched-chain amino acid ABC t... 100 6e-19 ref|ZP_02909830.1| inner-membrane translocator [Burkholderia amb... 100 6e-19 ref|YP_001583601.1| leucine/isoleucine/valine transporter permea... 100 7e-19 ref|ZP_03582435.1| high-affinity branched-chain amino acid ABC t... 100 7e-19 >ref|YP_003775085.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63177.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 408 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 82/82 (100%), Positives = 82/82 (100%) Query: 1 MPETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVL 60 MPETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVL Sbjct: 1 MPETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVL 60 Query: 61 SRSSAGIKLPALPRMQPRQQRA 82 SRSSAGIKLPALPRMQPRQQRA Sbjct: 61 SRSSAGIKLPALPRMQPRQQRA 82 >ref|YP_727074.1| leucine/isoleucine/valine transporter permease subunit [Ralstonia eutropha H16] emb|CAJ93706.1| ABC-type transporter, permease component: HAAT family [Ralstonia eutropha H16] Length = 427 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 50/80 (62%), Positives = 69/80 (86%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 ++ KNA+TAA++TA+LTIP+LG+QL+LEGY+VVL HW PV +AV AVFLFQL KP+LSR Sbjct: 22 QSLKNAITAAVMTAILTIPILGLQLKLEGYKVVLEPHWRPVWIAVAAVFLFQLFKPLLSR 81 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + ++LPA+P++ RQQRA Sbjct: 82 AGSAVRLPAVPQLGARQQRA 101 >ref|YP_002006123.1| leucine/isoleucine/valine transporter permease subunit [Cupriavidus taiwanensis LMG 19424] emb|CAQ70060.1| high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) [Cupriavidus taiwanensis LMG 19424] Length = 427 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 68/80 (85%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 ++ KNA+TAA++TA+LTIP+LG+QL+LEGY+VVL HW PV +AV AVFLFQL KPVL+R Sbjct: 22 QSLKNAITAAVMTAILTIPILGLQLKLEGYKVVLEPHWRPVWLAVAAVFLFQLFKPVLTR 81 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + ++LPALP++ +QQR Sbjct: 82 AGSAVRLPALPQLGAQQQRV 101 >ref|YP_296523.1| leucine/isoleucine/valine transporter permease subunit [Ralstonia eutropha JMP134] gb|AAZ61679.1| L-valine ABC transporter membrane protein / L-leucine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein [Ralstonia eutropha JMP134] Length = 425 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/80 (58%), Positives = 68/80 (85%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 ++ KNAV AA++TA+LTIP+LG+QL+L+GY+VVL +HW PV +AV AVFLFQL KP+LSR Sbjct: 20 QSLKNAVVAAVMTAILTIPVLGLQLKLDGYKVVLESHWRPVWIAVAAVFLFQLFKPLLSR 79 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + +++PA+P++ QQRA Sbjct: 80 AGSAVRMPAMPQLGVGQQRA 99 >ref|YP_584624.1| leucine/isoleucine/valine transporter permease subunit [Cupriavidus metallidurans CH34] gb|ABF09355.1| leucine/isoleucine/valine transporter subunit, membrane component of ABC superfamily [Cupriavidus metallidurans CH34] Length = 424 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/79 (60%), Positives = 65/79 (82%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 +T KNAVTAA++TA+LT+PLLG+QL+L+GY+VVL HW PV +AV VF+FQL KP+L+R Sbjct: 19 DTLKNAVTAAVLTAILTVPLLGLQLKLDGYKVVLEPHWRPVWIAVAVVFIFQLFKPMLTR 78 Query: 63 SSAGIKLPALPRMQPRQQR 81 + +KLPALP M ++QR Sbjct: 79 ARGAVKLPALPAMGAQRQR 97 >ref|YP_004686306.1| HAAT family ABC transporter permease [Cupriavidus necator N-1] gb|AEI77825.1| ABC transport system permease protein HAAT family [Cupriavidus necator N-1] Length = 426 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 47/79 (59%), Positives = 66/79 (83%) Query: 4 TFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSRS 63 + KNA+ AA++TA+LTIP+LG+QL+LEGY+VVL HW PV +AV AVFLFQL KP+LSR+ Sbjct: 22 SLKNAIFAAVMTAILTIPILGLQLKLEGYKVVLEPHWRPVWIAVAAVFLFQLFKPLLSRA 81 Query: 64 SAGIKLPALPRMQPRQQRA 82 + ++LP++P++ RQQR Sbjct: 82 GSAVRLPSVPQLGARQQRV 100 >ref|ZP_03573463.1| high-affinity branched-chain amino acid ABC transporter, permease protein [Burkholderia multivorans CGD2M] ref|ZP_03579115.1| high-affinity branched-chain amino acid ABC transporter, permease protein [Burkholderia multivorans CGD2] gb|EEE06546.1| high-affinity branched-chain amino acid ABC transporter, permease protein [Burkholderia multivorans CGD2] gb|EEE12167.1| high-affinity branched-chain amino acid ABC transporter, permease protein [Burkholderia multivorans CGD2M] Length = 423 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 64/80 (80%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 + KNAV AA++TA+LT+P+LG+QL+L+GY+VVL HW PV +AV AVFLFQL KP L R Sbjct: 18 QALKNAVAAAILTAILTVPVLGLQLKLDGYQVVLERHWRPVWIAVAAVFLFQLLKPWLLR 77 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + +KLPA+P M RQQRA Sbjct: 78 AKSAVKLPAVPAMGARQQRA 97 >ref|ZP_02909830.1| inner-membrane translocator [Burkholderia ambifaria MEX-5] gb|EDT39043.1| inner-membrane translocator [Burkholderia ambifaria MEX-5] Length = 423 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/80 (63%), Positives = 63/80 (78%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 + KNAV AAL+TA+LTIP+LG+QL+LEGY+VVL HW PV +AV AVFLFQL KP L R Sbjct: 18 QALKNAVAAALLTAILTIPVLGLQLKLEGYQVVLTPHWRPVWIAVAAVFLFQLFKPWLVR 77 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + +KLPALP M +QQR Sbjct: 78 AKSAVKLPALPAMGAQQQRV 97 >ref|YP_001583601.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia multivorans ATCC 17616] ref|YP_001949274.1| leucine/isoleucine/valine transporter permease subunit [Burkholderia multivorans ATCC 17616] gb|ABX17309.1| inner-membrane translocator [Burkholderia multivorans ATCC 17616] dbj|BAG46738.1| branched-chain amino acid transport system permease protein [Burkholderia multivorans ATCC 17616] Length = 423 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 64/80 (80%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 + KNAV AA++TA+LT+P+LG+QL+L+GY+VVL HW PV +AV AVFLFQL KP L R Sbjct: 18 QALKNAVAAAILTAILTVPVLGLQLKLDGYQVVLERHWRPVWIAVAAVFLFQLFKPWLLR 77 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + +KLPA+P M RQQRA Sbjct: 78 AKSAVKLPAVPAMGARQQRA 97 >ref|ZP_03582435.1| high-affinity branched-chain amino acid ABC transporter, permease protein [Burkholderia multivorans CGD1] gb|EEE02608.1| high-affinity branched-chain amino acid ABC transporter, permease protein [Burkholderia multivorans CGD1] Length = 423 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 64/80 (80%) Query: 3 ETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNTHWTPVLVAVLAVFLFQLAKPVLSR 62 + KNAV AA++TA+LT+P+LG+QL+L+GY+VVL HW PV +AV AVFLFQL KP L R Sbjct: 18 QALKNAVAAAILTAILTVPVLGLQLKLDGYQVVLERHWRPVWIAVAAVFLFQLFKPWLLR 77 Query: 63 SSAGIKLPALPRMQPRQQRA 82 + + +KLPA+P M RQQRA Sbjct: 78 AKSAVKLPAVPAMGARQQRA 97