BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0188.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775082.1| lipoprotein signal peptide protein [Herbaspi... 538 e-151 gb|AEH78631.1| hypothetical protein signal peptide [Sinorhizobiu... 165 8e-39 ref|ZP_03630733.1| conserved hypothetical protein [bacterium Ell... 164 9e-39 ref|NP_386080.1| lipoprotein signal peptide [Sinorhizobium melil... 162 6e-38 ref|YP_001327443.1| lipoprotein signal peptide [Sinorhizobium me... 160 2e-37 ref|YP_002826352.1| hypothetical protein NGR_c18350 [Sinorhizobi... 159 3e-37 ref|YP_169024.1| hypothetical protein SPO3836 [Ruegeria pomeroyi... 158 7e-37 ref|ZP_08263088.1| hypothetical protein ABI_11290 [Asticcacaulis... 155 4e-36 ref|YP_004613263.1| hypothetical protein Mesop_4749 [Mesorhizobi... 154 1e-35 ref|ZP_01202688.1| periplasmic protein [Flavobacteria bacterium ... 154 1e-35 >ref|YP_003775082.1| lipoprotein signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ63174.1| lipoprotein signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 259/264 (98%), Positives = 261/264 (98%) Query: 1 MPLFPLTALRSLLPAALAAAALALCLAAPLPVRAAEVKQYQYHQVFISTCRADPRTDTIR 60 MPLFPLTALRSLLPAALAAAALALCLAAPLP RAAEVKQYQYHQVFISTCRADPRTDTIR Sbjct: 11 MPLFPLTALRSLLPAALAAAALALCLAAPLPARAAEVKQYQYHQVFISTCRADPRTDTIR 70 Query: 61 MYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLNTR 120 MYWKDANGVPLANFLRLDAHLR+QGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLNTR Sbjct: 71 MYWKDANGVPLANFLRLDAHLRSQGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLNTR 130 Query: 121 QNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGPLMLVEGKINHR 180 QNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVAR+ATQSGPLMLVEGKINHR Sbjct: 131 QNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARFATQSGPLMLVEGKINHR 190 Query: 181 FDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYLDGSISRMY 240 FDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYLDGSISRMY Sbjct: 191 FDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYLDGSISRMY 250 Query: 241 PTLEANMGPAFGAMIAVVRAHGGK 264 PTLEANMGPAFGAMIAVVR HG K Sbjct: 251 PTLEANMGPAFGAMIAVVRTHGAK 274 >gb|AEH78631.1| hypothetical protein signal peptide [Sinorhizobium meliloti SM11] Length = 250 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 19/242 (7%) Query: 1 MPLFP--LTALRSLLPAALAAAALALCLAAPLPVRAAEVKQYQYHQVFISTCRADPRTDT 58 MPLF A +LL A LA A C + ++ C DP T Sbjct: 1 MPLFTRAFIAGAALLSAGLATPAFGAC------------RDVRHLGETYLACSFDPATSD 48 Query: 59 IRMYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLN 118 IR+Y KD GVP +F L LR + Q +V A N G+Y + L P+GL+VE G + LN Sbjct: 49 IRLYNKDQAGVPFRSFRALSLELRRREQYLVFAMNGGMYHEDLAPVGLHVEEGAEQAPLN 108 Query: 119 TRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGPLMLVEGKIN 178 T +GNF++ PNGVF +GD +A ++ Y L R+ATQSGP+++++G ++ Sbjct: 109 TNP-GWGNFHMLPNGVFYVGDGKAGVMAAEAY----RLAGIEPRFATQSGPMLVIDGALH 163 Query: 179 HRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYLDGSISR 238 RF PDS ++ RN V + G V A+++ P+ F DFAT RD L C +AL+LDG+IS Sbjct: 164 PRFLPDSDSLKTRNGVGVTPNGQVVFAVSKRPVRFHDFATLFRDALDCPNALFLDGTISS 223 Query: 239 MY 240 +Y Sbjct: 224 LY 225 >ref|ZP_03630733.1| conserved hypothetical protein [bacterium Ellin514] gb|EEF59016.1| conserved hypothetical protein [bacterium Ellin514] Length = 243 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 130/234 (55%), Gaps = 10/234 (4%) Query: 9 LRSLLPAALAAAALALCLAAPLPVRAAEVKQYQYHQVFISTCRADPRTDTIRMYWKDANG 68 ++SLL A L L A+ + EV + ++ CR D R + ++++ +D G Sbjct: 1 MKSLLFTGWIATMLILNEASAVEFSTIEVAGKR-----VTICRVDVRKEKLQLFHRDETG 55 Query: 69 VPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLNTRQNAYGNFY 128 P NF RL A L+ +GQ +V A N G+Y +GL V G QL LN N GNF+ Sbjct: 56 QPFKNFERLTAWLQPRGQKLVFAMNGGMYHADFSAVGLLVSEGKQLSPLNL-TNGTGNFF 114 Query: 129 LQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGPLMLVEGKINHRFDPDSVNM 188 L+PNG+F++ + A +VE+S+Y A ATQSGPL++ GKI+ F PDS N Sbjct: 115 LKPNGIFLVSEAGALVVESSEYPR----LRERAIIATQSGPLLVQGGKIHPAFKPDSQNR 170 Query: 189 VVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYLDGSISRMYPT 242 +RN V + V AI+ P++F +FAT RD L C DALY DG++S ++ T Sbjct: 171 FIRNGVGIPSRDVAIFAISEAPVNFHEFATMFRDTLHCPDALYFDGAVSSLHST 224 >ref|NP_386080.1| lipoprotein signal peptide [Sinorhizobium meliloti 1021] ref|YP_004549285.1| hypothetical protein Sinme_1946 [Sinorhizobium meliloti AK83] emb|CAC46553.1| Hypothetical protein signal peptide [Sinorhizobium meliloti 1021] gb|AEG04696.1| Protein of unknown function DUF2233, periplasmic [Sinorhizobium meliloti BL225C] gb|AEG53671.1| Protein of unknown function DUF2233, periplasmic [Sinorhizobium meliloti AK83] Length = 250 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 82/191 (42%), Positives = 117/191 (61%), Gaps = 5/191 (2%) Query: 50 CRADPRTDTIRMYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVE 109 C DP T IR+Y KD GVP +F L LR + Q +V A N G+Y + L P+GL+VE Sbjct: 40 CSFDPATSDIRLYNKDQAGVPFRSFRALSLELRRREQYLVFAMNGGMYHEDLAPVGLHVE 99 Query: 110 NGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGP 169 G + LNT +GNF++ PNGVF +GD +A ++ Y G R+ATQSGP Sbjct: 100 EGAEQAPLNT-NPGWGNFHMLPNGVFYVGDGKAGVMAAEAYRLAG----IEPRFATQSGP 154 Query: 170 LMLVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDA 229 +++++G ++ RF PDS ++ RN V + G V A+++ P+ F DFAT RD L C +A Sbjct: 155 MLVIDGALHPRFLPDSDSLKTRNGVGVTPNGQVVFAVSKRPVRFHDFATLFRDALDCPNA 214 Query: 230 LYLDGSISRMY 240 L+LDG+IS +Y Sbjct: 215 LFLDGTISSLY 225 >ref|YP_001327443.1| lipoprotein signal peptide [Sinorhizobium medicae WSM419] gb|ABR60608.1| conserved hypothetical lipoprotein signal peptide [Sinorhizobium medicae WSM419] Length = 250 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 5/191 (2%) Query: 50 CRADPRTDTIRMYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVE 109 C DP+T+ +R+Y KD GVP ++F L LR +GQ ++ A N G+Y + L P+GL+VE Sbjct: 40 CSFDPQTNDLRIYNKDRAGVPFSSFRALSLELRRRGQYLIFAMNGGMYQEDLSPVGLHVE 99 Query: 110 NGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGP 169 G + LNT +GNF++ PNGVF + +A ++ Y G R+ATQSGP Sbjct: 100 EGTEQTPLNTNP-GWGNFHMLPNGVFHVDGGKAGVIAAEAYRLAG----IKPRFATQSGP 154 Query: 170 LMLVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDA 229 +++V+G ++ RF PDS ++ RN V + G V A ++ P+ F DFAT RD L C +A Sbjct: 155 MLVVDGALHPRFLPDSDSLRTRNGVGVATNGKVVFAASKRPVRFHDFATLFRDALDCPNA 214 Query: 230 LYLDGSISRMY 240 L+LDG+IS +Y Sbjct: 215 LFLDGTISSLY 225 >ref|YP_002826352.1| hypothetical protein NGR_c18350 [Sinorhizobium fredii NGR234] gb|ACP25599.1| hypothetical protein NGR_c18350 [Sinorhizobium fredii NGR234] Length = 250 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 115/191 (60%), Gaps = 5/191 (2%) Query: 50 CRADPRTDTIRMYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVE 109 C DP IR+Y KD GVP +F L LR + + +V A N G+Y + L P+GL+VE Sbjct: 40 CSFDPAASDIRLYNKDQAGVPFKSFQALSLELRQRDEYIVFAMNGGMYHEDLSPVGLHVE 99 Query: 110 NGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGP 169 GV+ LNT +GNF+L PNGVF GD +A ++ Y G R+ATQSGP Sbjct: 100 EGVEQAPLNTNP-GWGNFHLLPNGVFYFGDGKAGVMAAEAYRDAG----IKPRFATQSGP 154 Query: 170 LMLVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDA 229 +++++G ++ RF PDS ++ RN V + +G V +++ P+ F DFAT D L C +A Sbjct: 155 MLVIDGALHPRFLPDSDSLKTRNGVGVTKSGEVVFVVSKRPVRFHDFATLFLDGLDCPNA 214 Query: 230 LYLDGSISRMY 240 L+LDG+IS +Y Sbjct: 215 LFLDGTISSLY 225 >ref|YP_169024.1| hypothetical protein SPO3836 [Ruegeria pomeroyi DSS-3] gb|AAV97050.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 245 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 137/244 (56%), Gaps = 8/244 (3%) Query: 17 LAAAALALCLAAPLPVRAAEVKQYQYHQVFISTCRADPRTDTIRMYWKDANGVPLANFLR 76 + AAA+ L A + + + + C D RT +R++ D G PL F Sbjct: 2 IRAAAVLFLLGVAGQAAAVDCRDLTHEGNLYTVCEVDARTADLRLFLNDVEGAPLGQFST 61 Query: 77 LDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLNTRQNAYGNFYLQPNGVFV 136 +D L+T+G+ + A NAG+Y P+G YVE+G++ +++ GNF L PNGVF Sbjct: 62 VDQTLQTEGKRLAFAMNAGMYHDDRSPVGHYVEDGIEQKRVIANAGP-GNFGLLPNGVFC 120 Query: 137 LGDRQAYIVETSDYAAEGSLWNTVARYATQSGPLMLVEGKINHRFDPDSVNMVVRNAVCL 196 L +A ++ET DY A R+ATQSGP+++++G ++ RF PDS + +RN V Sbjct: 121 LRSGRADVIETLDYQAA----KPDCRFATQSGPMLVIDGALHPRFLPDSTSRYIRNGVGT 176 Query: 197 DHAGV-VTLAIARNPISFFDFATFLRDELKCSDALYLDGSISRMY-PTL-EANMGPAFGA 253 G AI+ N ++F++F T RD LK +ALY DG+ISR+Y P+L A++G + G Sbjct: 177 SADGARAVFAISGNSVTFYEFGTLFRDVLKTPNALYFDGNISRLYAPSLNRADLGFSMGP 236 Query: 254 MIAV 257 ++ V Sbjct: 237 IVGV 240 >ref|ZP_08263088.1| hypothetical protein ABI_11290 [Asticcacaulis biprosthecum C19] gb|EGF92692.1| hypothetical protein ABI_11290 [Asticcacaulis biprosthecum C19] Length = 236 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 8/210 (3%) Query: 53 DPRTDTIRMYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGV 112 DP + + +WKDA G +A+ L + QG+ +V ATNAGI+ K PLGL+V +G Sbjct: 31 DPGKERLSFHWKDARGHRIASLSGLARQAKEQGRTLVFATNAGIFAKDFTPLGLFVADGK 90 Query: 113 QLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGPLML 172 R LNT GNF++QPNGVF + +I T+ + + ATQSGP+++ Sbjct: 91 TRRPLNTGTGG-GNFFMQPNGVFYVDGTGGHIARTAGFKPTPDI-----SLATQSGPMLV 144 Query: 173 VEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYL 232 G IN +F S N +VR+ V ++ G + I+ P+SF+DFA + RD+L+C +ALYL Sbjct: 145 ETGVINSQFAVKSKNRLVRSGVGINRDGKIVFVISNGPVSFYDFARYFRDDLRCDNALYL 204 Query: 233 DGSISRMYPTLEA--NMGPAFGAMIAVVRA 260 DG ISRMY + + F M+AV +A Sbjct: 205 DGVISRMYAPAQGRRDTDGDFVGMLAVTKA 234 >ref|YP_004613263.1| hypothetical protein Mesop_4749 [Mesorhizobium opportunistum WSM2075] gb|AEH89169.1| Protein of unknown function DUF2233, periplasmic [Mesorhizobium opportunistum WSM2075] Length = 280 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 138/264 (52%), Gaps = 21/264 (7%) Query: 6 LTALRSLLPAALAAA-ALALCLAAPLPVRAAEVKQYQYHQVFISTCRADPRTDTIRMYWK 64 L +++ LP A+A A A P R + + C DP+ ++ ++WK Sbjct: 31 LALIKATLPQAVATTVAFGQWFATVPPCR-----DFTFEATSYLVCEVDPKQYSVELFWK 85 Query: 65 DANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGVQLRKLNTRQNAY 124 D G P + LDA R G+ M+ A NAG+Y L+P+GLYVE G ++ + T + Sbjct: 86 DQTGKPFQSLHNLDAAQRMAGRTMLFAINAGMYHPDLRPVGLYVERGREMATVKTGSGS- 144 Query: 125 GNFYLQPNGVFVLGDRQAYIVETSDYAAEGSLWNTVARYATQSGPLMLVEGKINHRFDPD 184 GNF LQPNG+F + D +A + T D+ ++ YATQSGP+++++G+++ +F D Sbjct: 145 GNFSLQPNGIFYVSDGKAAVRATRDFVSK----RPPTDYATQSGPMLVIDGQLHPKFQAD 200 Query: 185 SVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALYLDGSISRMY-PTL 243 + R+ V + GV AI+ ++F FA RD L C +AL+LDG+IS + P + Sbjct: 201 GTSRKTRDGVGVRKDGVTVFAISNGTVTFHAFARLFRDALGCDNALFLDGTISSLLAPAI 260 Query: 244 EA-----NMGPAFGAMIAVVRAHG 262 N+GP MI V R G Sbjct: 261 GRNDDYWNLGP----MIGVFRKSG 280 >ref|ZP_01202688.1| periplasmic protein [Flavobacteria bacterium BBFL7] gb|EAS19153.1| periplasmic protein [Flavobacteria bacterium BBFL7] Length = 241 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 9/208 (4%) Query: 53 DPRTDTIRMYWKDANGVPLANFLRLDAHLRTQGQDMVCATNAGIYDKQLQPLGLYVENGV 112 D +++YW D + P+ F +L+ H++ Q + +V A NAG+Y K P GLY+ENG Sbjct: 38 DLTKQKLQLYWLDQDNKPIETFEQLNMHVKQQDKRLVYAMNAGMYLKDHSPQGLYIENGT 97 Query: 113 QLRKLNTRQNAYGNFYLQPNGVFVLG-DRQAYIVETSDYAAEGSLWNTVARYATQSGPLM 171 ++L+T YGNFYLQPNGVF L D +A + T + ++ YATQSGP++ Sbjct: 98 IHKQLDTVTVGYGNFYLQPNGVFYLTQDGKAQVTATPQLSNFSNI-----TYATQSGPML 152 Query: 172 LVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFDFATFLRDELKCSDALY 231 ++ I+ F+ S N+ +RNAV + G + LAI++ I+F+DFATF +++ C +ALY Sbjct: 153 VINDTIHPAFNKGSKNVHIRNAVGILPDGRILLAISKEKINFYDFATFFKNQ-GCKNALY 211 Query: 232 LDGSISRMY-PTLEAN-MGPAFGAMIAV 257 LDG +SR+Y PT+ M FG MI V Sbjct: 212 LDGFVSRIYDPTINVEQMDGHFGVMIGV 239